Wall clock time and date at job start Tue Mar 31 2020 05:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99773 * 2 1 4 4 C 1.52992 * 109.47228 * 306.22473 * 3 2 1 5 5 C 1.50697 * 109.47080 * 186.22420 * 3 2 1 6 6 O 1.21296 * 120.00109 * 0.08440 * 5 3 2 7 7 N 1.34772 * 120.00015 * 180.08918 * 5 3 2 8 8 C 1.37095 * 120.00265 * 243.07929 * 7 5 3 9 9 H 1.08000 * 120.00595 * 189.88460 * 8 7 5 10 10 C 1.38952 * 119.99672 * 9.88840 * 8 7 5 11 11 N 1.31415 * 119.99968 * 11.20101 * 10 8 7 12 12 Si 1.86803 * 120.00158 * 191.20570 * 10 8 7 13 13 H 1.48500 * 109.47199 * 94.98272 * 12 10 8 14 14 H 1.48500 * 109.47072 * 214.98136 * 12 10 8 15 15 H 1.48492 * 109.46986 * 334.98497 * 12 10 8 16 16 C 1.46507 * 120.00214 * 63.08141 * 7 5 3 17 17 C 1.53001 * 109.46875 * 95.69123 * 16 7 5 18 18 C 1.50703 * 109.46641 * 180.02562 * 17 16 7 19 19 O 1.20820 * 120.00126 * 359.97438 * 18 17 16 20 20 O 1.34232 * 119.99982 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47011 * 66.22474 * 3 2 1 22 22 C 1.52998 * 117.51805 * 217.57344 * 21 3 2 23 23 C 1.52999 * 60.00231 * 107.48191 * 22 21 3 24 24 H 1.09004 * 109.46852 * 180.15891 * 1 2 3 25 25 H 1.08998 * 109.47260 * 300.16366 * 1 2 3 26 26 H 1.09007 * 109.47041 * 60.16607 * 1 2 3 27 27 H 1.09003 * 109.47280 * 186.22120 * 4 3 2 28 28 H 1.08998 * 109.47058 * 306.22324 * 4 3 2 29 29 H 1.08996 * 109.47273 * 66.21998 * 4 3 2 30 30 H 0.97000 * 119.99636 * 185.01240 * 11 10 8 31 31 H 1.09001 * 109.47153 * 215.69007 * 16 7 5 32 32 H 1.08999 * 109.46862 * 335.69096 * 16 7 5 33 33 H 1.09001 * 109.47135 * 299.99894 * 17 16 7 34 34 H 1.08999 * 109.47398 * 60.00301 * 17 16 7 35 35 H 0.96693 * 116.99914 * 179.97438 * 20 18 17 36 36 H 1.08998 * 115.55071 * 71.86625 * 21 3 2 37 37 H 1.09002 * 117.49480 * 214.97146 * 22 21 3 38 38 H 1.08995 * 117.49779 * 359.97438 * 22 21 3 39 39 H 1.09000 * 117.49575 * 252.51313 * 23 22 21 40 40 H 1.08995 * 117.49975 * 107.48854 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4389 2.1181 -1.1636 5 6 3.5048 1.1900 -0.1540 6 8 4.0214 0.0973 -0.2555 7 7 4.2675 2.3009 -0.1789 8 6 4.9908 2.6108 -1.3016 9 1 5.7215 3.4055 -1.2710 10 6 4.7835 1.9026 -2.4790 11 7 3.7539 1.0930 -2.5862 12 14 5.9685 2.1011 -3.9093 13 1 6.9906 1.0251 -3.8584 14 1 5.2196 2.0122 -5.1886 15 1 6.6373 3.4238 -3.8181 16 6 4.3239 3.1772 0.9938 17 6 5.5457 2.8170 1.8413 18 6 5.6033 3.7181 3.0479 19 8 4.7546 4.5620 3.2127 20 8 6.5975 3.5830 3.9396 21 6 1.6863 2.0080 1.3201 22 6 1.3893 3.5080 1.2684 23 6 0.2555 2.5119 1.5198 24 1 -0.3633 -1.0277 0.0029 25 1 -0.3634 0.5164 0.8885 26 1 -0.3633 0.5113 -0.8915 27 1 1.9609 3.0727 -1.2310 28 1 1.5720 1.5647 -2.0931 29 1 0.3767 2.2959 -0.9957 30 1 3.6491 0.5442 -3.3791 31 1 4.4004 4.2148 0.6686 32 1 3.4190 3.0483 1.5875 33 1 5.4692 1.7794 2.1665 34 1 6.4507 2.9459 1.2476 35 1 6.5925 4.1840 4.6971 36 1 2.2132 1.6291 2.1958 37 1 1.7209 4.1159 2.1102 38 1 1.4251 3.9948 0.2939 39 1 -0.4549 2.3434 0.7104 40 1 -0.1588 2.4646 2.5268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599031791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:29 Heat of formation + Delta-G solvation = -103.315568 kcal Electronic energy + Delta-G solvation = -24871.416598 eV Core-core repulsion = 21268.406054 eV Total energy + Delta-G solvation = -3603.010544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14543 -39.67372 -37.31962 -36.03880 -35.63407 -34.31589 -32.25870 -30.31240 -29.47256 -26.75412 -25.26799 -24.28355 -23.35725 -22.24766 -20.89126 -19.94673 -18.84840 -17.91023 -16.98763 -16.29470 -15.98374 -15.70686 -15.30808 -15.08437 -14.79803 -14.44447 -13.84950 -13.66977 -13.31060 -13.05687 -12.89733 -12.56526 -11.87490 -11.69428 -11.61685 -11.40031 -11.35126 -11.21581 -11.04683 -10.90604 -10.67460 -10.56512 -10.45005 -10.41570 -10.32328 -10.16624 -9.95280 -9.42967 -9.10997 -8.76631 -8.13925 -7.32721 -6.08592 -3.56306 2.45376 3.25348 3.30922 3.37936 3.39703 3.87124 4.04799 4.26967 4.48874 5.08158 5.15119 5.23327 5.26870 5.36867 5.48479 5.55258 5.58444 5.81982 5.84836 5.89515 5.91486 6.09046 6.10748 6.13558 6.19255 6.20801 6.39370 6.41777 6.52398 6.55973 6.67980 6.74034 6.82876 7.39313 7.54832 7.89688 8.09749 8.15190 9.05598 9.39225 9.59179 10.05652 11.02290 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.009513 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.819201 B = 2942.681698 C = 4727.172424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.353 6.353 3 C 0.134 3.866 4 C -0.151 4.151 5 C 0.605 3.395 6 O -0.491 6.491 7 N -0.550 5.550 8 C -0.292 4.292 9 H 0.088 0.912 10 C 0.018 3.982 11 N -0.876 5.876 12 Si 0.919 3.081 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.131 3.869 17 C -0.136 4.136 18 C 0.483 3.517 19 O -0.521 6.521 20 O -0.522 6.522 21 C -0.176 4.176 22 C -0.166 4.166 23 C -0.185 4.185 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.402 0.598 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 4.811 8.508 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.271 6.271 3 C 0.089 3.911 4 C -0.208 4.208 5 C 0.392 3.608 6 O -0.361 6.361 7 N -0.280 5.280 8 C -0.418 4.418 9 H 0.105 0.895 10 C -0.184 4.184 11 N -0.519 5.519 12 Si 0.747 3.253 13 H -0.211 1.211 14 H -0.215 1.215 15 H -0.202 1.202 16 C 0.005 3.995 17 C -0.176 4.176 18 C 0.326 3.674 19 O -0.410 6.410 20 O -0.333 6.333 21 C -0.195 4.195 22 C -0.203 4.203 23 C -0.222 4.222 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.260 0.740 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.903 3.878 7.942 9.662 hybrid contribution 0.401 0.690 -0.250 0.836 sum -3.502 4.569 7.692 9.608 Atomic orbital electron populations 1.22890 0.83289 1.01597 0.99879 1.88082 1.17839 1.26490 1.94659 1.21202 0.95117 0.83077 0.91663 1.22286 0.97214 1.01652 0.99661 1.18505 0.85482 0.83658 0.73144 1.90420 1.74841 1.29666 1.41203 1.42519 1.49230 1.23485 1.12788 1.19303 1.17787 1.18747 0.85970 0.89451 1.24929 0.96964 0.98562 0.97952 1.69296 1.25729 1.26560 1.30272 0.86028 0.80321 0.77963 0.80969 1.21055 1.21468 1.20191 1.21203 0.95423 0.94881 0.87951 1.22168 1.05061 0.98922 0.91418 1.23913 0.77371 0.82683 0.83429 1.90671 1.39259 1.35289 1.75789 1.84617 1.50852 1.61361 1.36490 1.22962 0.99108 0.97312 1.00144 1.23144 1.01760 0.91487 1.03891 1.23156 0.91798 1.04967 1.02265 0.90828 0.93681 0.94317 0.90917 0.89025 0.94723 0.91984 0.91636 0.89672 0.88150 0.87306 0.74045 0.88079 0.88458 0.87669 0.88541 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.51 101.05 0.96 1.30 16 2 O -0.35 -7.87 9.88 -55.14 -0.54 -8.41 16 3 C 0.13 2.87 1.00 -91.78 -0.09 2.78 16 4 C -0.15 -3.11 5.95 37.15 0.22 -2.89 16 5 C 0.60 15.33 3.39 -10.99 -0.04 15.29 16 6 O -0.49 -14.59 16.08 -14.36 -0.23 -14.82 16 7 N -0.55 -13.01 2.27 -114.81 -0.26 -13.27 16 8 C -0.29 -7.45 9.72 -14.93 -0.15 -7.59 16 9 H 0.09 2.12 7.86 -52.49 -0.41 1.70 16 10 C 0.02 0.47 5.21 -17.47 -0.09 0.38 16 11 N -0.88 -24.33 8.10 55.50 0.45 -23.88 16 12 Si 0.92 21.15 29.57 -169.99 -5.03 16.12 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.13 2.52 4.21 -4.04 -0.02 2.50 16 17 C -0.14 -2.31 6.10 -27.88 -0.17 -2.48 16 18 C 0.48 7.29 8.33 36.01 0.30 7.59 16 19 O -0.52 -8.84 16.74 -18.75 -0.31 -9.15 16 20 O -0.52 -6.32 13.42 -39.26 -0.53 -6.84 16 21 C -0.18 -3.10 3.27 -90.62 -0.30 -3.40 16 22 C -0.17 -2.54 7.63 -26.73 -0.20 -2.74 16 23 C -0.19 -2.62 7.80 -26.73 -0.21 -2.82 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.66 5.06 -51.93 -0.26 0.39 16 26 H 0.04 0.62 6.48 -51.93 -0.34 0.28 16 27 H 0.07 1.56 6.61 -51.93 -0.34 1.21 16 28 H 0.09 2.17 6.59 -51.93 -0.34 1.82 16 29 H 0.03 0.60 5.09 -51.93 -0.26 0.33 16 30 H 0.27 7.39 8.32 -40.82 -0.34 7.05 16 31 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 32 H 0.09 1.55 3.01 -51.93 -0.16 1.40 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 35 H 0.40 2.92 9.10 45.56 0.41 3.34 16 36 H 0.10 1.80 7.81 -51.93 -0.41 1.39 16 37 H 0.10 1.40 7.99 -51.93 -0.41 0.99 16 38 H 0.11 1.69 6.10 -51.93 -0.32 1.37 16 39 H 0.10 1.32 5.35 -51.93 -0.28 1.04 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -32.84 315.48 -5.84 -38.69 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.36 Total: 8.91 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 0.22 Total: 7.90 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.19 Total: -37.15 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.62 Total: -39.23 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.84 -5.84 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599031791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.630 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds