Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99773 * 2 1 4 4 C 1.52992 * 109.47228 * 306.22473 * 3 2 1 5 5 C 1.50697 * 109.47080 * 186.22420 * 3 2 1 6 6 O 1.21296 * 120.00109 * 0.08440 * 5 3 2 7 7 N 1.34772 * 120.00015 * 180.08918 * 5 3 2 8 8 C 1.37095 * 120.00265 * 243.07929 * 7 5 3 9 9 H 1.08000 * 120.00595 * 189.88460 * 8 7 5 10 10 C 1.38952 * 119.99672 * 9.88840 * 8 7 5 11 11 N 1.31415 * 119.99968 * 11.20101 * 10 8 7 12 12 Si 1.86803 * 120.00158 * 191.20570 * 10 8 7 13 13 H 1.48500 * 109.47199 * 94.98272 * 12 10 8 14 14 H 1.48500 * 109.47072 * 214.98136 * 12 10 8 15 15 H 1.48492 * 109.46986 * 334.98497 * 12 10 8 16 16 C 1.46507 * 120.00214 * 63.08141 * 7 5 3 17 17 C 1.53001 * 109.46875 * 95.69123 * 16 7 5 18 18 C 1.50703 * 109.46641 * 180.02562 * 17 16 7 19 19 O 1.20820 * 120.00126 * 359.97438 * 18 17 16 20 20 O 1.34232 * 119.99982 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47011 * 66.22474 * 3 2 1 22 22 C 1.52998 * 117.51805 * 217.57344 * 21 3 2 23 23 C 1.52999 * 60.00231 * 107.48191 * 22 21 3 24 24 H 1.09004 * 109.46852 * 180.15891 * 1 2 3 25 25 H 1.08998 * 109.47260 * 300.16366 * 1 2 3 26 26 H 1.09007 * 109.47041 * 60.16607 * 1 2 3 27 27 H 1.09003 * 109.47280 * 186.22120 * 4 3 2 28 28 H 1.08998 * 109.47058 * 306.22324 * 4 3 2 29 29 H 1.08996 * 109.47273 * 66.21998 * 4 3 2 30 30 H 0.97000 * 119.99636 * 185.01240 * 11 10 8 31 31 H 1.09001 * 109.47153 * 215.69007 * 16 7 5 32 32 H 1.08999 * 109.46862 * 335.69096 * 16 7 5 33 33 H 1.09001 * 109.47135 * 299.99894 * 17 16 7 34 34 H 1.08999 * 109.47398 * 60.00301 * 17 16 7 35 35 H 0.96693 * 116.99914 * 179.97438 * 20 18 17 36 36 H 1.08998 * 115.55071 * 71.86625 * 21 3 2 37 37 H 1.09002 * 117.49480 * 214.97146 * 22 21 3 38 38 H 1.08995 * 117.49779 * 359.97438 * 22 21 3 39 39 H 1.09000 * 117.49575 * 252.51313 * 23 22 21 40 40 H 1.08995 * 117.49975 * 107.48854 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4389 2.1181 -1.1636 5 6 3.5048 1.1900 -0.1540 6 8 4.0214 0.0973 -0.2555 7 7 4.2675 2.3009 -0.1789 8 6 4.9908 2.6108 -1.3016 9 1 5.7215 3.4055 -1.2710 10 6 4.7835 1.9026 -2.4790 11 7 3.7539 1.0930 -2.5862 12 14 5.9685 2.1011 -3.9093 13 1 6.9906 1.0251 -3.8584 14 1 5.2196 2.0122 -5.1886 15 1 6.6373 3.4238 -3.8181 16 6 4.3239 3.1772 0.9938 17 6 5.5457 2.8170 1.8413 18 6 5.6033 3.7181 3.0479 19 8 4.7546 4.5620 3.2127 20 8 6.5975 3.5830 3.9396 21 6 1.6863 2.0080 1.3201 22 6 1.3893 3.5080 1.2684 23 6 0.2555 2.5119 1.5198 24 1 -0.3633 -1.0277 0.0029 25 1 -0.3634 0.5164 0.8885 26 1 -0.3633 0.5113 -0.8915 27 1 1.9609 3.0727 -1.2310 28 1 1.5720 1.5647 -2.0931 29 1 0.3767 2.2959 -0.9957 30 1 3.6491 0.5442 -3.3791 31 1 4.4004 4.2148 0.6686 32 1 3.4190 3.0483 1.5875 33 1 5.4692 1.7794 2.1665 34 1 6.4507 2.9459 1.2476 35 1 6.5925 4.1840 4.6971 36 1 2.2132 1.6291 2.1958 37 1 1.7209 4.1159 2.1102 38 1 1.4251 3.9948 0.2939 39 1 -0.4549 2.3434 0.7104 40 1 -0.1588 2.4646 2.5268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599031791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = -125.518730 kcal Electronic energy + Delta-G solvation = -24872.379399 eV Core-core repulsion = 21268.406054 eV Total energy + Delta-G solvation = -3603.973345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60095 -41.02848 -39.03821 -37.34699 -36.97301 -36.09088 -34.09500 -31.96345 -31.08659 -28.22506 -27.06870 -25.80852 -24.91357 -23.46363 -22.32566 -21.43256 -20.53577 -19.13272 -18.65348 -17.67825 -17.47019 -17.06342 -16.97104 -16.76231 -16.37353 -16.04343 -15.51012 -15.33022 -14.68135 -14.45897 -14.35424 -13.92968 -13.51825 -13.31869 -13.13627 -13.05468 -12.87118 -12.77429 -12.72982 -12.49332 -12.35343 -12.14021 -12.08389 -11.87967 -11.82622 -11.59594 -11.38260 -11.03100 -10.79356 -10.27244 -10.02640 -9.22785 -8.09449 -5.57418 1.24062 1.44245 1.49482 1.56662 1.94935 2.11432 2.51366 2.69681 2.91329 3.30284 3.64763 3.75458 3.91881 4.01964 4.07392 4.10888 4.20188 4.43784 4.50155 4.57698 4.65580 4.69355 4.74615 4.77902 4.86518 4.90197 5.01063 5.01254 5.08192 5.14791 5.25434 5.30552 5.52037 5.64197 5.70832 6.09952 6.46058 7.05639 7.07010 7.48301 7.71645 8.12491 8.99504 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011239 B = 0.009513 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.819201 B = 2942.681698 C = 4727.172424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.394 6.394 3 C 0.137 3.863 4 C -0.135 4.135 5 C 0.598 3.402 6 O -0.554 6.554 7 N -0.560 5.560 8 C -0.295 4.295 9 H 0.099 0.901 10 C -0.037 4.037 11 N -0.900 5.900 12 Si 0.978 3.022 13 H -0.297 1.297 14 H -0.292 1.292 15 H -0.257 1.257 16 C 0.130 3.870 17 C -0.134 4.134 18 C 0.499 3.501 19 O -0.539 6.539 20 O -0.513 6.513 21 C -0.201 4.201 22 C -0.159 4.159 23 C -0.155 4.155 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.258 0.742 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.427 0.573 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 6.573 10.070 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.313 6.313 3 C 0.094 3.906 4 C -0.192 4.192 5 C 0.389 3.611 6 O -0.428 6.428 7 N -0.290 5.290 8 C -0.422 4.422 9 H 0.116 0.884 10 C -0.235 4.235 11 N -0.543 5.543 12 Si 0.805 3.195 13 H -0.224 1.224 14 H -0.218 1.218 15 H -0.181 1.181 16 C 0.006 3.994 17 C -0.173 4.173 18 C 0.343 3.657 19 O -0.429 6.429 20 O -0.327 6.327 21 C -0.219 4.219 22 C -0.196 4.196 23 C -0.192 4.192 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.289 0.711 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.737 5.704 9.554 12.093 hybrid contribution 0.695 0.141 -0.646 0.959 sum -4.042 5.845 8.908 11.396 Atomic orbital electron populations 1.23144 0.80517 1.03278 1.01151 1.88019 1.20957 1.27255 1.95037 1.20959 0.92325 0.83409 0.93935 1.22092 0.99128 1.00141 0.97862 1.19354 0.87484 0.83057 0.71202 1.90374 1.76289 1.31789 1.44380 1.42670 1.49326 1.23517 1.13476 1.19674 1.17772 1.18401 0.86357 0.88369 1.25738 0.98397 0.98931 1.00470 1.69453 1.27074 1.27550 1.30267 0.85094 0.78121 0.78195 0.78065 1.22408 1.21810 1.18077 1.21353 0.97066 0.94129 0.86851 1.21914 1.03867 0.99091 0.92454 1.23202 0.77581 0.81753 0.83209 1.90673 1.40092 1.35886 1.76253 1.84533 1.49216 1.61950 1.36982 1.22720 1.02699 0.98749 0.97763 1.23152 1.02199 0.90163 1.04046 1.23293 0.90021 1.01662 1.04205 0.89225 0.91237 0.93894 0.92110 0.92569 0.91264 0.93166 0.91331 0.88456 0.88950 0.87486 0.71088 0.88580 0.87135 0.88476 0.87691 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.47 9.51 113.37 1.08 1.55 16 2 O -0.39 -17.71 9.88 -129.94 -1.28 -18.99 16 3 C 0.14 5.92 1.00 -11.54 -0.01 5.91 16 4 C -0.13 -5.57 5.95 71.98 0.43 -5.14 16 5 C 0.60 31.20 3.39 87.66 0.30 31.50 16 6 O -0.55 -34.44 16.08 15.96 0.26 -34.18 16 7 N -0.56 -26.88 2.27 -635.53 -1.45 -28.33 16 8 C -0.29 -15.25 9.72 84.04 0.82 -14.43 16 9 H 0.10 4.73 7.86 -2.91 -0.02 4.70 16 10 C -0.04 -2.01 5.21 84.93 0.44 -1.57 16 11 N -0.90 -51.95 8.10 21.66 0.18 -51.78 16 12 Si 0.98 44.31 29.57 68.60 2.03 46.33 16 13 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 15 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 16 C 0.13 4.94 4.21 86.38 0.36 5.31 16 17 C -0.13 -4.46 6.10 29.85 0.18 -4.28 16 18 C 0.50 14.06 8.33 71.24 0.59 14.65 16 19 O -0.54 -16.99 16.74 21.98 0.37 -16.63 16 20 O -0.51 -10.99 13.42 -51.43 -0.69 -11.68 16 21 C -0.20 -6.73 3.27 -10.79 -0.04 -6.77 16 22 C -0.16 -4.43 7.63 30.59 0.23 -4.20 16 23 C -0.16 -3.79 7.80 30.60 0.24 -3.55 16 24 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 25 H 0.07 1.81 5.06 -2.39 -0.01 1.80 16 26 H 0.04 1.30 6.48 -2.38 -0.02 1.28 16 27 H 0.06 2.61 6.61 -2.39 -0.02 2.59 16 28 H 0.06 2.73 6.59 -2.39 -0.02 2.71 16 29 H 0.07 2.29 5.09 -2.39 -0.01 2.28 16 30 H 0.26 14.89 8.32 -92.71 -0.77 14.12 16 31 H 0.07 2.54 8.04 -2.39 -0.02 2.53 16 32 H 0.10 3.46 3.01 -2.39 -0.01 3.45 16 33 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 35 H 0.43 4.74 9.10 -74.06 -0.67 4.06 16 36 H 0.10 3.31 7.81 -2.39 -0.02 3.30 16 37 H 0.11 2.82 7.99 -2.39 -0.02 2.80 16 38 H 0.10 2.91 6.10 -2.39 -0.01 2.89 16 39 H 0.10 2.41 5.35 -2.39 -0.01 2.40 16 40 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -74.00 315.48 4.45 -69.55 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.41 Total: 26.72 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 4.63 Total: 18.98 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.27 Total: -80.10 kcal Atomic # 8 Polarization: -80.13 SS G_CDS: -1.35 Total: -81.48 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.00 4.45 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599031791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.973 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds