Wall clock time and date at job start Tue Mar 31 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00002 * 2 1 4 4 C 1.53003 * 109.47237 * 90.00091 * 3 2 1 5 5 C 1.53000 * 109.47422 * 59.99682 * 4 3 2 6 6 C 1.52997 * 109.46831 * 60.00167 * 5 4 3 7 7 C 1.50703 * 109.47194 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99263 * 16.94369 * 7 6 5 9 9 N 1.34775 * 120.00051 * 196.93964 * 7 6 5 10 10 C 1.37106 * 119.99557 * 184.47842 * 9 7 6 11 11 H 1.08000 * 119.99387 * 223.52554 * 10 9 7 12 12 C 1.38949 * 119.99895 * 43.52757 * 10 9 7 13 13 N 1.31408 * 120.00322 * 21.58321 * 12 10 9 14 14 Si 1.86799 * 119.99663 * 201.58140 * 12 10 9 15 15 H 1.48505 * 109.47307 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46855 * 120.00125 * 14 12 10 17 17 H 1.48500 * 109.47188 * 239.99877 * 14 12 10 18 18 C 1.46494 * 120.00388 * 4.48519 * 9 7 6 19 19 C 1.50698 * 109.47266 * 87.17111 * 18 9 7 20 20 O 1.20830 * 120.00331 * 0.02562 * 19 18 9 21 21 O 1.34232 * 120.00238 * 180.02562 * 19 18 9 22 22 C 1.53002 * 109.47342 * 299.99692 * 6 5 4 23 23 C 1.53000 * 109.46906 * 60.00354 * 22 6 5 24 24 H 1.08991 * 109.46965 * 60.00392 * 1 2 3 25 25 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46958 * 300.00162 * 1 2 3 27 27 H 1.08998 * 109.46958 * 329.99652 * 3 2 1 28 28 H 1.09003 * 109.46814 * 299.99538 * 4 3 2 29 29 H 1.08997 * 109.46949 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.47188 * 300.00468 * 5 4 3 31 31 H 1.08998 * 109.47089 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47257 * 60.00018 * 6 5 4 33 33 H 0.97000 * 120.00141 * 184.92504 * 13 12 10 34 34 H 1.08996 * 109.47296 * 207.17370 * 18 9 7 35 35 H 1.09001 * 109.46782 * 327.17571 * 18 9 7 36 36 H 0.96696 * 117.00322 * 179.97438 * 21 19 18 37 37 H 1.08994 * 109.47385 * 179.97438 * 22 6 5 38 38 H 1.08993 * 109.47217 * 300.00562 * 22 6 5 39 39 H 1.08999 * 109.47188 * 59.99658 * 23 22 6 40 40 H 1.09005 * 109.47412 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2177 1.7714 1.4425 5 6 3.1515 0.7974 2.1638 6 6 4.5001 0.7551 1.4426 7 6 5.4201 -0.2038 2.1534 8 8 4.9660 -1.0147 2.9328 9 7 6.7473 -0.1603 1.9230 10 6 7.5737 -1.0908 2.4982 11 1 8.5106 -0.7824 2.9382 12 6 7.2059 -2.4307 2.5150 13 7 6.3254 -2.8812 1.6499 14 14 7.9633 -3.5914 3.7673 15 1 8.9192 -2.8423 4.6220 16 1 6.8915 -4.1721 4.6156 17 1 8.6807 -4.6827 3.0604 18 6 7.3070 0.8813 1.0582 19 6 7.6026 2.1103 1.8787 20 8 7.3701 2.1155 3.0644 21 8 8.1241 3.1994 1.2924 22 6 4.2928 0.2891 0.0001 23 6 3.3590 1.2631 -0.7212 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.3450 1.9993 -0.5139 28 1 1.2569 1.8015 1.9563 29 1 2.6606 2.7673 1.4425 30 1 2.7081 -0.1984 2.1638 31 1 3.2989 1.1291 3.1916 32 1 4.9435 1.7510 1.4426 33 1 6.0152 -3.7985 1.7066 34 1 8.2281 0.5188 0.6021 35 1 6.5883 1.1301 0.2773 36 1 8.2962 3.9634 1.8595 37 1 5.2535 0.2595 -0.5138 38 1 3.8494 -0.7066 0.0002 39 1 3.8023 2.2589 -0.7212 40 1 3.2109 0.9309 -1.7488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599100747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:26 Heat of formation + Delta-G solvation = -170.433136 kcal Electronic energy + Delta-G solvation = -24413.596478 eV Core-core repulsion = 20807.675497 eV Total energy + Delta-G solvation = -3605.920980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.97338 -39.23830 -37.89463 -35.66552 -35.31214 -34.06088 -31.92125 -30.43624 -29.84106 -27.54174 -26.42330 -24.84718 -22.59406 -22.27674 -21.27317 -19.73482 -18.68113 -17.59511 -16.77428 -16.28388 -15.92993 -15.75069 -15.46685 -15.23521 -15.10934 -14.56119 -13.99356 -13.62385 -13.36085 -13.13154 -12.93579 -12.49690 -12.12556 -11.99558 -11.89916 -11.66827 -11.62762 -11.23095 -11.10119 -10.98228 -10.82543 -10.68555 -10.55948 -10.28884 -10.13916 -10.05268 -9.93613 -9.86924 -9.22650 -8.73011 -8.03618 -7.23459 -6.11652 -3.85212 2.78420 3.35458 3.40929 3.47470 3.50662 3.93818 4.22798 4.50144 4.85118 4.94238 5.05381 5.15520 5.28665 5.35543 5.41177 5.55967 5.58656 5.68711 5.70336 5.72521 5.81622 5.83191 5.90585 5.94388 6.07104 6.11781 6.22614 6.24830 6.42471 6.61732 6.70042 6.90427 6.93551 7.05752 7.39654 7.67176 8.25600 8.45041 9.04583 9.15951 9.63342 10.25703 10.97519 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.006966 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.385053 B = 4018.385579 C = 5309.977537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.090 3.910 4 C -0.140 4.140 5 C -0.090 4.090 6 C -0.101 4.101 7 C 0.503 3.497 8 O -0.529 6.529 9 N -0.442 5.442 10 C -0.348 4.348 11 H 0.075 0.925 12 C 0.078 3.922 13 N -0.835 5.835 14 Si 0.907 3.093 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.286 1.286 18 C 0.113 3.887 19 C 0.447 3.553 20 O -0.500 6.500 21 O -0.529 6.529 22 C -0.101 4.101 23 C -0.114 4.114 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.265 0.735 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 11.109 -7.197 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.032 3.968 4 C -0.177 4.177 5 C -0.128 4.128 6 C -0.123 4.123 7 C 0.291 3.709 8 O -0.405 6.405 9 N -0.165 5.165 10 C -0.474 4.474 11 H 0.093 0.907 12 C -0.132 4.132 13 N -0.468 5.468 14 Si 0.734 3.266 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.213 1.213 18 C -0.015 4.015 19 C 0.287 3.713 20 O -0.386 6.386 21 O -0.340 6.340 22 C -0.139 4.139 23 C -0.152 4.152 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.592 9.961 -6.793 13.741 hybrid contribution 0.249 0.319 1.024 1.101 sum -6.343 10.279 -5.769 13.386 Atomic orbital electron populations 1.22737 0.82094 1.02451 0.99272 1.88037 1.18616 1.27502 1.94908 1.22129 0.94729 0.84453 0.95489 1.22051 1.00053 0.99465 0.96167 1.21155 0.93409 1.00457 0.97740 1.21266 0.96324 0.98471 0.96271 1.19854 0.82608 0.85170 0.83258 1.90502 1.74648 1.38922 1.36424 1.42995 1.05488 1.24718 1.43330 1.18945 1.04462 0.86025 1.37982 0.90699 1.25124 0.96173 0.97014 0.94932 1.69885 1.29801 1.16594 1.30543 0.86251 0.78805 0.80059 0.81510 1.19590 1.20612 1.21265 1.21139 1.02566 0.85429 0.92325 1.25262 0.73151 0.84499 0.88431 1.90714 1.48284 1.82320 1.17236 1.84597 1.76883 1.25285 1.47233 1.21381 0.98959 1.00297 0.93231 1.21675 0.94160 1.00220 0.99113 0.94616 0.89922 0.94418 0.92820 0.92197 0.91546 0.90187 0.92349 0.91813 0.92530 0.86935 0.88203 0.74566 0.91640 0.89992 0.91039 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.45 16 2 O -0.37 -5.72 9.00 -35.23 -0.32 -6.04 16 3 C 0.09 1.21 2.92 -26.73 -0.08 1.13 16 4 C -0.14 -1.97 5.63 -26.73 -0.15 -2.12 16 5 C -0.09 -1.69 4.49 -26.73 -0.12 -1.81 16 6 C -0.10 -2.01 1.68 -91.77 -0.15 -2.17 16 7 C 0.50 12.98 6.01 -10.98 -0.07 12.91 16 8 O -0.53 -15.98 14.09 5.54 0.08 -15.90 16 9 N -0.44 -11.19 2.01 -116.10 -0.23 -11.42 16 10 C -0.35 -9.79 9.14 -14.93 -0.14 -9.93 16 11 H 0.08 2.09 7.92 -52.49 -0.42 1.68 16 12 C 0.08 2.22 4.28 -17.47 -0.07 2.15 16 13 N -0.83 -24.58 12.08 55.50 0.67 -23.91 16 14 Si 0.91 22.54 29.61 -169.99 -5.03 17.51 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.11 2.19 5.56 -5.20 -0.03 2.16 16 19 C 0.45 8.27 7.87 36.00 0.28 8.55 16 20 O -0.50 -11.31 17.14 -18.75 -0.32 -11.63 16 21 O -0.53 -7.26 13.42 -39.26 -0.53 -7.78 16 22 C -0.10 -1.80 4.77 -26.73 -0.13 -1.93 16 23 C -0.11 -1.55 5.66 -26.73 -0.15 -1.70 16 24 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.40 7.87 -51.93 -0.41 -0.01 16 27 H 0.05 0.59 7.79 -51.93 -0.40 0.19 16 28 H 0.06 0.77 7.87 -51.93 -0.41 0.37 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.72 7.46 -51.93 -0.39 1.33 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.17 6.81 -51.93 -0.35 0.81 16 33 H 0.26 7.53 8.32 -40.82 -0.34 7.19 16 34 H 0.11 2.03 8.02 -51.93 -0.42 1.62 16 35 H 0.10 1.67 4.79 -51.93 -0.25 1.42 16 36 H 0.40 3.73 9.10 45.56 0.41 4.14 16 37 H 0.07 1.14 6.29 -51.93 -0.33 0.81 16 38 H 0.08 1.73 7.68 -51.93 -0.40 1.33 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -36.28 326.21 -5.50 -41.79 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.02 Total: 3.78 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 0.29 Total: 8.69 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.44 Total: -35.33 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.09 Total: -41.36 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.28 -5.50 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599100747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.647 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds