Wall clock time and date at job start Tue Mar 31 2020 06:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00002 * 2 1 4 4 C 1.53003 * 109.47237 * 90.00091 * 3 2 1 5 5 C 1.53000 * 109.47422 * 59.99682 * 4 3 2 6 6 C 1.52997 * 109.46831 * 60.00167 * 5 4 3 7 7 C 1.50703 * 109.47194 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99263 * 16.94369 * 7 6 5 9 9 N 1.34775 * 120.00051 * 196.93964 * 7 6 5 10 10 C 1.37106 * 119.99557 * 184.47842 * 9 7 6 11 11 H 1.08000 * 119.99387 * 223.52554 * 10 9 7 12 12 C 1.38949 * 119.99895 * 43.52757 * 10 9 7 13 13 N 1.31408 * 120.00322 * 21.58321 * 12 10 9 14 14 Si 1.86799 * 119.99663 * 201.58140 * 12 10 9 15 15 H 1.48505 * 109.47307 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46855 * 120.00125 * 14 12 10 17 17 H 1.48500 * 109.47188 * 239.99877 * 14 12 10 18 18 C 1.46494 * 120.00388 * 4.48519 * 9 7 6 19 19 C 1.50698 * 109.47266 * 87.17111 * 18 9 7 20 20 O 1.20830 * 120.00331 * 0.02562 * 19 18 9 21 21 O 1.34232 * 120.00238 * 180.02562 * 19 18 9 22 22 C 1.53002 * 109.47342 * 299.99692 * 6 5 4 23 23 C 1.53000 * 109.46906 * 60.00354 * 22 6 5 24 24 H 1.08991 * 109.46965 * 60.00392 * 1 2 3 25 25 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46958 * 300.00162 * 1 2 3 27 27 H 1.08998 * 109.46958 * 329.99652 * 3 2 1 28 28 H 1.09003 * 109.46814 * 299.99538 * 4 3 2 29 29 H 1.08997 * 109.46949 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.47188 * 300.00468 * 5 4 3 31 31 H 1.08998 * 109.47089 * 180.02562 * 5 4 3 32 32 H 1.09007 * 109.47257 * 60.00018 * 6 5 4 33 33 H 0.97000 * 120.00141 * 184.92504 * 13 12 10 34 34 H 1.08996 * 109.47296 * 207.17370 * 18 9 7 35 35 H 1.09001 * 109.46782 * 327.17571 * 18 9 7 36 36 H 0.96696 * 117.00322 * 179.97438 * 21 19 18 37 37 H 1.08994 * 109.47385 * 179.97438 * 22 6 5 38 38 H 1.08993 * 109.47217 * 300.00562 * 22 6 5 39 39 H 1.08999 * 109.47188 * 59.99658 * 23 22 6 40 40 H 1.09005 * 109.47412 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2177 1.7714 1.4425 5 6 3.1515 0.7974 2.1638 6 6 4.5001 0.7551 1.4426 7 6 5.4201 -0.2038 2.1534 8 8 4.9660 -1.0147 2.9328 9 7 6.7473 -0.1603 1.9230 10 6 7.5737 -1.0908 2.4982 11 1 8.5106 -0.7824 2.9382 12 6 7.2059 -2.4307 2.5150 13 7 6.3254 -2.8812 1.6499 14 14 7.9633 -3.5914 3.7673 15 1 8.9192 -2.8423 4.6220 16 1 6.8915 -4.1721 4.6156 17 1 8.6807 -4.6827 3.0604 18 6 7.3070 0.8813 1.0582 19 6 7.6026 2.1103 1.8787 20 8 7.3701 2.1155 3.0644 21 8 8.1241 3.1994 1.2924 22 6 4.2928 0.2891 0.0001 23 6 3.3590 1.2631 -0.7212 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.3450 1.9993 -0.5139 28 1 1.2569 1.8015 1.9563 29 1 2.6606 2.7673 1.4425 30 1 2.7081 -0.1984 2.1638 31 1 3.2989 1.1291 3.1916 32 1 4.9435 1.7510 1.4426 33 1 6.0152 -3.7985 1.7066 34 1 8.2281 0.5188 0.6021 35 1 6.5883 1.1301 0.2773 36 1 8.2962 3.9634 1.8595 37 1 5.2535 0.2595 -0.5138 38 1 3.8494 -0.7066 0.0002 39 1 3.8023 2.2589 -0.7212 40 1 3.2109 0.9309 -1.7488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599100747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:26 Heat of formation + Delta-G solvation = -197.159640 kcal Electronic energy + Delta-G solvation = -24414.755426 eV Core-core repulsion = 20807.675497 eV Total energy + Delta-G solvation = -3607.079928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53893 -40.60401 -39.41811 -37.05592 -36.69215 -36.01016 -33.94650 -31.71181 -31.22625 -29.28327 -27.38570 -26.74868 -24.16188 -23.56729 -22.72748 -21.19899 -20.28308 -19.02870 -18.67635 -17.76370 -17.27815 -17.17447 -16.99327 -16.59603 -16.44706 -16.21329 -15.81962 -15.17176 -14.85209 -14.50434 -14.34064 -13.78307 -13.69276 -13.46034 -13.27412 -13.14764 -13.07077 -12.96372 -12.80371 -12.58292 -12.41786 -12.26768 -12.14099 -11.99843 -11.65579 -11.56494 -11.35918 -11.13894 -10.79726 -10.31749 -10.02886 -9.29696 -8.27128 -6.03171 1.30725 1.33796 1.42246 1.49907 1.97112 2.25065 2.61520 3.00283 3.12336 3.21790 3.76149 3.82272 3.91641 4.18498 4.21934 4.32290 4.34393 4.44415 4.47703 4.55622 4.57515 4.63038 4.64929 4.67517 4.84829 4.87961 4.92984 5.09316 5.11801 5.28096 5.34232 5.42211 5.46193 5.59129 5.69627 6.15737 6.47098 6.97099 7.08634 7.16450 7.58896 8.26668 8.81074 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.006966 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.385053 B = 4018.385579 C = 5309.977537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.085 3.915 4 C -0.131 4.131 5 C -0.086 4.086 6 C -0.090 4.090 7 C 0.487 3.513 8 O -0.591 6.591 9 N -0.458 5.458 10 C -0.362 4.362 11 H 0.070 0.930 12 C 0.031 3.969 13 N -0.863 5.863 14 Si 0.960 3.040 15 H -0.265 1.265 16 H -0.296 1.296 17 H -0.266 1.266 18 C 0.106 3.894 19 C 0.464 3.536 20 O -0.547 6.547 21 O -0.504 6.504 22 C -0.093 4.093 23 C -0.108 4.108 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.260 0.740 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.423 0.577 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.105 0.895 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 13.972 -9.036 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.028 3.972 4 C -0.169 4.169 5 C -0.124 4.124 6 C -0.112 4.112 7 C 0.277 3.723 8 O -0.472 6.472 9 N -0.180 5.180 10 C -0.489 4.489 11 H 0.087 0.913 12 C -0.176 4.176 13 N -0.498 5.498 14 Si 0.785 3.215 15 H -0.189 1.189 16 H -0.223 1.223 17 H -0.192 1.192 18 C -0.020 4.020 19 C 0.306 3.694 20 O -0.437 6.437 21 O -0.317 6.317 22 C -0.131 4.131 23 C -0.145 4.145 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.284 0.716 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.594 12.886 -8.681 16.879 hybrid contribution 0.320 -0.472 1.588 1.687 sum -6.275 12.414 -7.093 15.614 Atomic orbital electron populations 1.22904 0.80413 1.02992 1.00770 1.88019 1.20725 1.29114 1.95075 1.22309 0.95380 0.84535 0.94994 1.22040 0.99381 0.99025 0.96409 1.21076 0.93993 0.99845 0.97505 1.21225 0.95373 0.97707 0.96897 1.20956 0.83412 0.85246 0.82699 1.90449 1.75889 1.41675 1.39146 1.43160 1.05455 1.25479 1.43867 1.19117 1.04527 0.86858 1.38434 0.91255 1.25880 0.96763 0.98596 0.96315 1.69961 1.31436 1.16557 1.31874 0.85433 0.77768 0.78801 0.79467 1.18860 1.22305 1.19161 1.21337 1.03869 0.84589 0.92206 1.24684 0.72394 0.85131 0.87194 1.90723 1.50550 1.83306 1.19097 1.84500 1.75406 1.24955 1.46797 1.21283 1.00037 0.99449 0.92315 1.21720 0.93242 1.00439 0.99089 0.92128 0.90118 0.93712 0.88902 0.90987 0.88861 0.94133 0.94341 0.89406 0.93057 0.85546 0.85091 0.71589 0.91362 0.94391 0.87665 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.82 113.37 1.23 1.76 16 2 O -0.41 -12.16 9.00 -148.98 -1.34 -13.50 16 3 C 0.09 2.00 2.92 30.60 0.09 2.09 16 4 C -0.13 -3.36 5.63 30.60 0.17 -3.19 16 5 C -0.09 -3.29 4.49 30.59 0.14 -3.15 16 6 C -0.09 -3.57 1.68 -11.54 -0.02 -3.59 16 7 C 0.49 25.90 6.01 87.66 0.53 26.43 16 8 O -0.59 -37.80 14.09 -3.08 -0.04 -37.85 16 9 N -0.46 -23.46 2.01 -639.61 -1.29 -24.75 16 10 C -0.36 -20.88 9.14 84.04 0.77 -20.12 16 11 H 0.07 3.96 7.92 -2.91 -0.02 3.94 16 12 C 0.03 1.83 4.28 84.93 0.36 2.20 16 13 N -0.86 -52.91 12.08 21.66 0.26 -52.65 16 14 Si 0.96 47.61 29.61 68.60 2.03 49.64 16 15 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 C 0.11 3.94 5.56 85.63 0.48 4.42 16 19 C 0.46 16.12 7.87 71.24 0.56 16.68 16 20 O -0.55 -24.26 17.14 21.95 0.38 -23.89 16 21 O -0.50 -11.77 13.42 -51.43 -0.69 -12.46 16 22 C -0.09 -3.23 4.77 30.59 0.15 -3.09 16 23 C -0.11 -2.53 5.66 30.60 0.17 -2.35 16 24 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 0.86 7.87 -2.39 -0.02 0.84 16 27 H 0.09 1.53 7.79 -2.39 -0.02 1.51 16 28 H 0.07 1.68 7.87 -2.39 -0.02 1.66 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.04 1.84 7.46 -2.39 -0.02 1.82 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 3.01 6.81 -2.38 -0.02 3.00 16 33 H 0.26 15.49 8.32 -92.71 -0.77 14.72 16 34 H 0.13 4.36 8.02 -2.39 -0.02 4.34 16 35 H 0.13 4.02 4.79 -2.39 -0.01 4.01 16 36 H 0.42 6.08 9.10 -74.06 -0.67 5.41 16 37 H 0.07 2.27 6.29 -2.39 -0.02 2.26 16 38 H 0.04 1.65 7.68 -2.39 -0.02 1.63 16 39 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -85.07 326.21 4.31 -80.76 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.38 Total: 16.59 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 4.62 Total: 18.09 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -1.02 Total: -77.40 kcal Atomic # 8 Polarization: -85.99 SS G_CDS: -1.70 Total: -87.69 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -85.07 4.31 -80.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599100747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.396 kcal (2) G-P(sol) polarization free energy of solvation -85.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds