Wall clock time and date at job start Tue Mar 31 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00295 * 2 1 4 4 H 1.09007 * 110.91024 * 32.45441 * 3 2 1 5 5 C 1.54911 * 111.00784 * 268.55371 * 3 2 1 6 6 N 1.47425 * 104.92638 * 204.97020 * 5 3 2 7 7 C 1.34780 * 125.64389 * 204.09112 * 6 5 3 8 8 O 1.21277 * 119.99818 * 174.51153 * 7 6 5 9 9 C 1.50700 * 120.00131 * 354.51697 * 7 6 5 10 10 H 1.09004 * 109.47045 * 315.91879 * 9 7 6 11 11 C 1.52989 * 109.47490 * 75.92081 * 9 7 6 12 12 C 1.50698 * 109.46900 * 195.92667 * 9 7 6 13 13 H 1.08001 * 119.99965 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00172 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99696 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00457 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46711 * 60.00033 * 16 14 12 18 18 H 1.48498 * 109.47267 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46875 * 300.00297 * 16 14 12 20 20 C 1.47020 * 108.70630 * 24.07152 * 6 5 3 21 21 C 1.52999 * 109.88342 * 239.37194 * 20 6 5 22 22 C 1.50696 * 109.88357 * 118.35379 * 20 6 5 23 23 O 1.20823 * 120.00334 * 216.45381 * 22 20 6 24 24 O 1.34231 * 119.99538 * 36.45790 * 22 20 6 25 25 C 1.54324 * 107.26784 * 358.93990 * 20 6 5 26 26 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46803 * 299.99501 * 1 2 3 28 28 H 1.08998 * 109.47394 * 59.99205 * 1 2 3 29 29 H 1.09001 * 110.36722 * 86.07127 * 5 3 2 30 30 H 1.09000 * 110.36460 * 323.86497 * 5 3 2 31 31 H 1.09001 * 109.47360 * 186.62675 * 11 9 7 32 32 H 1.08995 * 109.47416 * 306.63325 * 11 9 7 33 33 H 1.09001 * 109.47040 * 66.63383 * 11 9 7 34 34 H 0.97008 * 119.99684 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47133 * 58.54172 * 21 20 6 36 36 H 1.09000 * 109.47287 * 178.54815 * 21 20 6 37 37 H 1.09006 * 109.46603 * 298.54621 * 21 20 6 38 38 H 0.96703 * 117.00133 * 179.97438 * 24 22 20 39 39 H 1.08999 * 110.71937 * 96.17377 * 25 20 6 40 40 H 1.09005 * 110.72039 * 219.26766 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3836 2.0104 0.5464 5 6 2.2696 1.7979 -1.4457 6 7 3.3620 2.7801 -1.3221 7 6 3.6196 3.7812 -2.1869 8 8 4.4850 4.5926 -1.9348 9 6 2.8324 3.8925 -3.4671 10 1 2.7387 2.9067 -3.9228 11 6 1.4397 4.4480 -3.1628 12 6 3.5464 4.8192 -4.4170 13 1 4.4770 5.2817 -4.1229 14 6 3.0118 5.0766 -5.6615 15 7 1.8788 4.5130 -6.0198 16 14 3.8965 6.2259 -6.8387 17 1 5.2486 5.6874 -7.1336 18 1 3.1214 6.3344 -8.1007 19 1 4.0231 7.5689 -6.2178 20 6 4.1235 2.4870 -0.0991 21 6 4.0916 3.6973 0.8363 22 6 5.5492 2.1492 -0.4516 23 8 6.1422 1.3032 0.1748 24 8 6.1602 2.7883 -1.4615 25 6 3.4500 1.2763 0.5808 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.3760 2.2731 -1.8505 30 1 2.5768 0.9666 -2.0802 31 1 0.8313 4.4184 -4.0667 32 1 0.9687 3.8434 -2.3878 33 1 1.5270 5.4781 -2.8172 34 1 1.5024 4.6944 -6.8953 35 1 3.0576 3.9405 1.0807 36 1 4.6360 3.4638 1.7513 37 1 4.5586 4.5499 0.3432 38 1 7.0750 2.5378 -1.6501 39 1 3.9555 0.3501 0.3075 40 1 3.4352 1.4009 1.6636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599129487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:51 Heat of formation + Delta-G solvation = -161.728083 kcal Electronic energy + Delta-G solvation = -24424.257671 eV Core-core repulsion = 20818.714171 eV Total energy + Delta-G solvation = -3605.543501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89079 -39.07236 -38.01330 -36.28451 -35.69222 -33.82536 -31.93931 -30.45934 -29.96998 -26.59826 -26.13163 -25.16507 -24.37532 -22.71659 -21.72650 -20.13104 -18.81093 -17.61337 -17.14036 -16.62317 -16.01019 -15.61438 -15.51220 -15.11621 -14.84042 -14.49537 -14.34735 -13.99435 -13.44745 -13.20887 -13.01041 -12.88232 -12.37274 -12.23779 -12.10476 -11.79487 -11.65228 -11.49631 -11.28759 -11.17963 -10.98781 -10.88051 -10.74258 -10.55717 -10.39793 -10.24017 -9.98405 -9.74701 -9.00624 -8.58062 -8.33361 -8.25618 -6.04883 -4.07238 2.31505 3.03611 3.30531 3.35271 3.37899 3.44332 3.73951 3.81041 4.36510 4.46094 4.51651 4.80919 4.99825 5.12602 5.24932 5.29140 5.29498 5.38963 5.55800 5.60788 5.69629 5.71202 5.84442 5.86344 5.90887 5.96999 6.28303 6.60646 6.66023 6.76165 6.80447 6.93344 7.04423 7.44086 7.71908 7.96043 8.05444 8.16178 8.35029 8.99879 9.18307 9.57666 11.03294 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.006086 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.781166 B = 4599.630078 C = 5698.999324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.076 3.924 4 H 0.082 0.918 5 C 0.078 3.922 6 N -0.620 5.620 7 C 0.542 3.458 8 O -0.512 6.512 9 C 0.038 3.962 10 H 0.047 0.953 11 C -0.130 4.130 12 C -0.499 4.499 13 H 0.073 0.927 14 C 0.059 3.941 15 N -0.897 5.897 16 Si 0.901 3.099 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.175 3.825 21 C -0.156 4.156 22 C 0.483 3.517 23 O -0.529 6.529 24 O -0.478 6.478 25 C -0.107 4.107 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.012 0.988 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.400 0.600 39 H 0.096 0.904 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 -7.052 12.487 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.291 6.291 3 C 0.017 3.983 4 H 0.100 0.900 5 C -0.046 4.046 6 N -0.361 5.361 7 C 0.334 3.666 8 O -0.385 6.385 9 C 0.017 3.983 10 H 0.065 0.935 11 C -0.188 4.188 12 C -0.538 4.538 13 H 0.091 0.909 14 C -0.141 4.141 15 N -0.536 5.536 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.087 3.913 21 C -0.214 4.214 22 C 0.325 3.675 23 O -0.418 6.418 24 O -0.286 6.286 25 C -0.145 4.145 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.257 0.743 39 H 0.115 0.885 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.343 -6.783 12.616 14.514 hybrid contribution 0.810 0.489 -0.829 1.258 sum -1.533 -6.294 11.787 13.449 Atomic orbital electron populations 1.22848 0.80614 1.02921 1.00446 1.87907 1.20045 1.26361 1.94830 1.23301 0.94268 0.85130 0.95587 0.89978 1.22847 0.91832 0.92938 0.96979 1.48941 1.31431 1.32286 1.23410 1.21848 0.83198 0.77306 0.84252 1.90530 1.32770 1.39498 1.75685 1.18835 0.92715 0.99185 0.87554 0.93520 1.21782 0.97872 0.98394 1.00782 1.21063 1.08063 1.26679 0.97980 0.90908 1.24934 0.95064 0.96203 0.97945 1.69875 1.18847 1.43991 1.20901 0.86506 0.79584 0.81326 0.79712 1.20243 1.21403 1.20174 1.20656 0.85516 0.96860 0.88223 1.22178 1.03709 0.97470 0.97995 1.23804 0.89831 0.77234 0.76664 1.90672 1.66981 1.32333 1.51847 1.84888 1.32164 1.62152 1.49354 1.22671 0.93927 0.97253 1.00649 0.89482 0.93904 0.93370 0.88918 0.90720 0.89129 0.96872 0.94521 0.92913 0.90736 0.91549 0.89334 0.74285 0.88520 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.89 101.05 1.10 1.35 16 2 O -0.37 -4.50 10.52 -35.23 -0.37 -4.87 16 3 C 0.08 0.93 3.49 -24.52 -0.09 0.84 16 4 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 5 C 0.08 1.17 6.17 -2.53 -0.02 1.15 16 6 N -0.62 -11.02 2.81 -157.07 -0.44 -11.46 16 7 C 0.54 12.02 6.09 -10.98 -0.07 11.95 16 8 O -0.51 -12.54 12.39 -16.27 -0.20 -12.74 16 9 C 0.04 0.93 1.99 -92.93 -0.19 0.75 16 10 H 0.05 1.19 7.92 -51.93 -0.41 0.78 16 11 C -0.13 -2.93 8.70 37.15 0.32 -2.61 16 12 C -0.50 -13.88 8.35 -34.44 -0.29 -14.16 16 13 H 0.07 2.13 6.87 -52.49 -0.36 1.77 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.90 -24.78 11.40 55.43 0.63 -24.15 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.18 2.73 0.81 -132.00 -0.11 2.62 16 21 C -0.16 -2.19 8.35 37.16 0.31 -1.88 16 22 C 0.48 8.28 7.13 36.00 0.26 8.54 16 23 O -0.53 -9.44 16.69 -18.75 -0.31 -9.75 16 24 O -0.48 -8.41 10.53 -46.53 -0.49 -8.90 16 25 C -0.11 -1.38 5.41 -24.84 -0.13 -1.51 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.39 5.42 -51.93 -0.28 1.11 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 2.21 6.28 -51.93 -0.33 1.89 16 32 H 0.01 0.24 5.72 -51.93 -0.30 -0.06 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.50 6.58 -51.93 -0.34 1.16 16 38 H 0.40 5.08 9.10 45.56 0.41 5.49 16 39 H 0.10 1.36 7.37 -51.93 -0.38 0.98 16 40 H 0.09 1.01 7.83 -51.93 -0.41 0.60 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -32.59 324.13 -5.20 -37.79 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.90 Total: 4.09 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 1.01 Total: 8.56 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.19 Total: -35.61 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.37 Total: -36.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.59 -5.20 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599129487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.939 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds