Wall clock time and date at job start Tue Mar 31 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00295 * 2 1 4 4 H 1.09007 * 110.91024 * 32.45441 * 3 2 1 5 5 C 1.54911 * 111.00784 * 268.55371 * 3 2 1 6 6 N 1.47425 * 104.92638 * 204.97020 * 5 3 2 7 7 C 1.34780 * 125.64389 * 204.09112 * 6 5 3 8 8 O 1.21277 * 119.99818 * 174.51153 * 7 6 5 9 9 C 1.50700 * 120.00131 * 354.51697 * 7 6 5 10 10 H 1.09004 * 109.47045 * 315.91879 * 9 7 6 11 11 C 1.52989 * 109.47490 * 75.92081 * 9 7 6 12 12 C 1.50698 * 109.46900 * 195.92667 * 9 7 6 13 13 H 1.08001 * 119.99965 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00172 * 179.97438 * 12 9 7 15 15 N 1.31515 * 119.99696 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 120.00457 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46711 * 60.00033 * 16 14 12 18 18 H 1.48498 * 109.47267 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46875 * 300.00297 * 16 14 12 20 20 C 1.47020 * 108.70630 * 24.07152 * 6 5 3 21 21 C 1.52999 * 109.88342 * 239.37194 * 20 6 5 22 22 C 1.50696 * 109.88357 * 118.35379 * 20 6 5 23 23 O 1.20823 * 120.00334 * 216.45381 * 22 20 6 24 24 O 1.34231 * 119.99538 * 36.45790 * 22 20 6 25 25 C 1.54324 * 107.26784 * 358.93990 * 20 6 5 26 26 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46803 * 299.99501 * 1 2 3 28 28 H 1.08998 * 109.47394 * 59.99205 * 1 2 3 29 29 H 1.09001 * 110.36722 * 86.07127 * 5 3 2 30 30 H 1.09000 * 110.36460 * 323.86497 * 5 3 2 31 31 H 1.09001 * 109.47360 * 186.62675 * 11 9 7 32 32 H 1.08995 * 109.47416 * 306.63325 * 11 9 7 33 33 H 1.09001 * 109.47040 * 66.63383 * 11 9 7 34 34 H 0.97008 * 119.99684 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47133 * 58.54172 * 21 20 6 36 36 H 1.09000 * 109.47287 * 178.54815 * 21 20 6 37 37 H 1.09006 * 109.46603 * 298.54621 * 21 20 6 38 38 H 0.96703 * 117.00133 * 179.97438 * 24 22 20 39 39 H 1.08999 * 110.71937 * 96.17377 * 25 20 6 40 40 H 1.09005 * 110.72039 * 219.26766 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3836 2.0104 0.5464 5 6 2.2696 1.7979 -1.4457 6 7 3.3620 2.7801 -1.3221 7 6 3.6196 3.7812 -2.1869 8 8 4.4850 4.5926 -1.9348 9 6 2.8324 3.8925 -3.4671 10 1 2.7387 2.9067 -3.9228 11 6 1.4397 4.4480 -3.1628 12 6 3.5464 4.8192 -4.4170 13 1 4.4770 5.2817 -4.1229 14 6 3.0118 5.0766 -5.6615 15 7 1.8788 4.5130 -6.0198 16 14 3.8965 6.2259 -6.8387 17 1 5.2486 5.6874 -7.1336 18 1 3.1214 6.3344 -8.1007 19 1 4.0231 7.5689 -6.2178 20 6 4.1235 2.4870 -0.0991 21 6 4.0916 3.6973 0.8363 22 6 5.5492 2.1492 -0.4516 23 8 6.1422 1.3032 0.1748 24 8 6.1602 2.7883 -1.4615 25 6 3.4500 1.2763 0.5808 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.3760 2.2731 -1.8505 30 1 2.5768 0.9666 -2.0802 31 1 0.8313 4.4184 -4.0667 32 1 0.9687 3.8434 -2.3878 33 1 1.5270 5.4781 -2.8172 34 1 1.5024 4.6944 -6.8953 35 1 3.0576 3.9405 1.0807 36 1 4.6360 3.4638 1.7513 37 1 4.5586 4.5499 0.3432 38 1 7.0750 2.5378 -1.6501 39 1 3.9555 0.3501 0.3075 40 1 3.4352 1.4009 1.6636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599129487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:51 Heat of formation + Delta-G solvation = -184.288871 kcal Electronic energy + Delta-G solvation = -24425.235981 eV Core-core repulsion = 20818.714171 eV Total energy + Delta-G solvation = -3606.521810 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21366 -40.46483 -39.28483 -37.52162 -37.07760 -35.77818 -33.50209 -31.81224 -31.51141 -27.44525 -27.33294 -27.06231 -25.74171 -24.34502 -22.93480 -21.56051 -20.21998 -18.98448 -18.42299 -18.21870 -17.70230 -17.14238 -16.80772 -16.40252 -16.08762 -15.86190 -15.62705 -15.35967 -14.93957 -14.66189 -14.35923 -14.25544 -13.89281 -13.48023 -13.35966 -13.13057 -12.97187 -12.90961 -12.65624 -12.62650 -12.47403 -12.41378 -12.32686 -12.19461 -12.00683 -11.79314 -11.62509 -11.03778 -10.68678 -10.55701 -10.16717 -9.71093 -8.14156 -6.23289 0.96994 1.42168 1.43280 1.51519 1.77848 1.91225 2.19515 2.45219 2.81113 3.16439 3.28121 3.43017 3.73057 4.00210 4.09619 4.20414 4.24331 4.47490 4.54934 4.62496 4.66436 4.68329 4.70787 4.76397 4.82177 4.88713 4.97548 4.97826 5.09578 5.11809 5.30926 5.46952 5.52865 5.75105 5.94406 6.18906 6.21091 6.58781 6.84310 6.90508 7.41114 7.52245 8.92170 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.006086 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.781166 B = 4599.630078 C = 5698.999324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.388 6.388 3 C 0.091 3.909 4 H 0.110 0.890 5 C 0.070 3.930 6 N -0.616 5.616 7 C 0.545 3.455 8 O -0.543 6.543 9 C 0.035 3.965 10 H 0.030 0.970 11 C -0.116 4.116 12 C -0.524 4.524 13 H 0.050 0.950 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.954 3.046 17 H -0.277 1.277 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.168 3.832 21 C -0.150 4.150 22 C 0.479 3.521 23 O -0.539 6.539 24 O -0.498 6.498 25 C -0.100 4.100 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.415 0.585 39 H 0.083 0.917 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -7.634 14.030 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.306 6.306 3 C 0.032 3.968 4 H 0.128 0.872 5 C -0.053 4.053 6 N -0.354 5.354 7 C 0.336 3.664 8 O -0.419 6.419 9 C 0.013 3.987 10 H 0.048 0.952 11 C -0.174 4.174 12 C -0.563 4.563 13 H 0.068 0.932 14 C -0.179 4.179 15 N -0.551 5.551 16 Si 0.780 3.220 17 H -0.202 1.202 18 H -0.201 1.201 19 H -0.201 1.201 20 C 0.081 3.919 21 C -0.208 4.208 22 C 0.321 3.679 23 O -0.429 6.429 24 O -0.309 6.309 25 C -0.137 4.137 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.275 0.725 39 H 0.102 0.898 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.423 -7.408 14.174 16.355 hybrid contribution 1.150 0.583 -1.312 1.840 sum -2.273 -6.825 12.862 14.737 Atomic orbital electron populations 1.23084 0.78878 1.04267 1.01364 1.87901 1.21948 1.26031 1.94720 1.23191 0.94451 0.85933 0.93184 0.87229 1.23049 0.90768 0.91975 0.99509 1.48642 1.32073 1.31241 1.23473 1.21231 0.82646 0.78172 0.84327 1.90513 1.33835 1.41127 1.76380 1.18727 0.93868 0.97533 0.88540 0.95189 1.21577 0.96654 0.98252 1.00927 1.21220 1.07847 1.27772 0.99449 0.93217 1.25568 0.95763 0.97408 0.99118 1.69956 1.19396 1.44458 1.21258 0.85676 0.78636 0.79471 0.78230 1.20246 1.20118 1.20140 1.21049 0.84469 0.98873 0.87463 1.22159 1.05143 0.95364 0.98151 1.24162 0.90507 0.76871 0.76317 1.90658 1.67462 1.32649 1.52122 1.84879 1.33658 1.62601 1.49722 1.22703 0.93750 0.95074 1.02192 0.88092 0.91946 0.93447 0.88861 0.91723 0.91208 0.93052 0.95724 0.92655 0.88630 0.88989 0.92540 0.72474 0.89821 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.89 113.37 1.23 1.52 16 2 O -0.39 -8.19 10.52 -148.98 -1.57 -9.76 16 3 C 0.09 1.94 3.49 32.03 0.11 2.05 16 4 H 0.11 1.79 7.90 -2.38 -0.02 1.77 16 5 C 0.07 2.00 6.17 86.86 0.54 2.54 16 6 N -0.62 -21.42 2.81 -769.23 -2.16 -23.58 16 7 C 0.54 24.45 6.09 87.66 0.53 24.98 16 8 O -0.54 -27.23 12.39 17.85 0.22 -27.01 16 9 C 0.03 1.72 1.99 -12.29 -0.02 1.69 16 10 H 0.03 1.58 7.92 -2.38 -0.02 1.56 16 11 C -0.12 -5.22 8.70 71.98 0.63 -4.59 16 12 C -0.52 -29.92 8.35 25.60 0.21 -29.70 16 13 H 0.05 3.01 6.87 -2.91 -0.02 2.99 16 14 C 0.02 1.14 5.30 84.65 0.45 1.59 16 15 N -0.91 -50.70 11.40 21.45 0.24 -50.46 16 16 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 C 0.17 4.98 0.81 3.21 0.00 4.98 16 21 C -0.15 -3.92 8.35 71.98 0.60 -3.32 16 22 C 0.48 16.16 7.13 71.23 0.51 16.67 16 23 O -0.54 -18.71 16.69 21.97 0.37 -18.34 16 24 O -0.50 -17.83 10.53 -44.48 -0.47 -18.29 16 25 C -0.10 -2.27 5.41 31.82 0.17 -2.10 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 0.67 8.11 -2.38 -0.02 0.65 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 2.63 5.42 -2.39 -0.01 2.62 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 3.42 6.28 -2.39 -0.01 3.41 16 32 H 0.05 1.85 5.72 -2.39 -0.01 1.84 16 33 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.87 6.58 -2.38 -0.02 1.86 16 38 H 0.42 10.83 9.10 -74.06 -0.67 10.16 16 39 H 0.08 2.17 7.37 -2.39 -0.02 2.16 16 40 H 0.13 2.12 7.83 -2.38 -0.02 2.10 16 Total: -1.00 -71.23 324.13 4.01 -67.22 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.39 Total: 17.32 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 4.96 Total: 16.32 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.92 Total: -74.04 kcal Atomic # 8 Polarization: -71.96 SS G_CDS: -1.45 Total: -73.41 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.23 4.01 -67.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599129487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.069 kcal (2) G-P(sol) polarization free energy of solvation -71.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds