Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99837 * 2 1 4 4 H 1.09002 * 110.88624 * 29.29947 * 3 2 1 5 5 C 1.54909 * 111.00614 * 265.41540 * 3 2 1 6 6 N 1.47423 * 104.83351 * 278.90217 * 5 3 2 7 7 C 1.34774 * 125.64935 * 155.83866 * 6 5 3 8 8 O 1.21282 * 120.00096 * 180.02562 * 7 6 5 9 9 C 1.50703 * 119.99909 * 0.02562 * 7 6 5 10 10 H 1.09006 * 109.46865 * 299.99965 * 9 7 6 11 11 C 1.52994 * 109.47286 * 60.00184 * 9 7 6 12 12 C 1.50703 * 109.47330 * 180.02562 * 9 7 6 13 13 H 1.08005 * 119.99756 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00337 * 180.02562 * 12 9 7 15 15 N 1.31513 * 119.99608 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 119.99999 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47246 * 60.00078 * 16 14 12 18 18 H 1.48506 * 109.47196 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47200 * 299.99919 * 16 14 12 20 20 C 1.47016 * 108.70440 * 335.86643 * 6 5 3 21 21 C 1.53000 * 109.88270 * 120.47489 * 20 6 5 22 22 C 1.50699 * 109.88830 * 241.49200 * 20 6 5 23 23 O 1.20820 * 120.00481 * 143.54603 * 22 20 6 24 24 O 1.34229 * 119.99442 * 323.54813 * 22 20 6 25 25 C 1.54383 * 107.28804 * 1.09781 * 20 6 5 26 26 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47462 * 300.00071 * 1 2 3 28 28 H 1.09004 * 109.47030 * 59.99812 * 1 2 3 29 29 H 1.09000 * 110.36449 * 37.73860 * 5 3 2 30 30 H 1.09002 * 110.36898 * 160.05791 * 5 3 2 31 31 H 1.08999 * 109.47326 * 300.00246 * 11 9 7 32 32 H 1.08997 * 109.47181 * 59.99994 * 11 9 7 33 33 H 1.08997 * 109.47426 * 179.97438 * 11 9 7 34 34 H 0.97000 * 119.99503 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46696 * 61.45731 * 21 20 6 36 36 H 1.09000 * 109.47265 * 181.45658 * 21 20 6 37 37 H 1.08997 * 109.47641 * 301.46068 * 21 20 6 38 38 H 0.96702 * 116.99564 * 180.02562 * 24 22 20 39 39 H 1.08999 * 110.70275 * 263.79201 * 25 20 6 40 40 H 1.08993 * 110.75646 * 140.50426 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3569 2.0217 0.4984 5 6 2.3416 1.7658 -1.4415 6 7 3.6265 1.1165 -1.7590 7 6 4.0820 0.8395 -2.9968 8 8 5.1587 0.3000 -3.1402 9 6 3.2533 1.2001 -4.2028 10 1 2.2949 0.6831 -4.1529 11 6 3.0168 2.7115 -4.2256 12 6 3.9822 0.7863 -5.4552 13 1 4.9490 0.3101 -5.3850 14 6 3.4153 1.0165 -6.6908 15 7 2.2382 1.5967 -6.7763 16 14 4.3192 0.5041 -8.2432 17 1 4.5482 -0.9630 -8.2213 18 1 3.5025 0.8594 -9.4316 19 1 5.6249 1.2081 -8.3108 20 6 4.3286 0.8205 -0.5016 21 6 4.5807 -0.6843 -0.3882 22 6 5.6386 1.5641 -0.4587 23 8 6.0438 2.0144 0.5867 24 8 6.3554 1.7262 -1.5819 25 6 3.4173 1.2877 0.6536 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.5676 1.4334 -2.1332 30 1 2.4450 2.8502 -1.4792 31 1 2.4894 3.0105 -3.3198 32 1 3.9751 3.2285 -4.2755 33 1 2.4178 2.9724 -5.0981 34 1 1.8392 1.7583 -7.6456 35 1 5.2137 -1.0099 -1.2137 36 1 5.0780 -0.8991 0.5577 37 1 3.6300 -1.2160 -0.4277 38 1 7.1893 2.2098 -1.5046 39 1 3.6999 2.2860 0.9878 40 1 3.4491 0.5794 1.4814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599129488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = -159.689373 kcal Electronic energy + Delta-G solvation = -24659.330907 eV Core-core repulsion = 21053.875811 eV Total energy + Delta-G solvation = -3605.455096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85240 -39.06267 -37.88787 -36.07976 -35.57975 -33.81958 -31.90576 -30.51183 -29.83220 -26.59634 -25.99823 -25.11078 -24.33239 -22.70449 -21.57631 -20.15633 -18.76955 -17.60735 -16.94762 -16.54452 -16.03085 -15.67735 -15.42109 -15.08039 -14.94738 -14.44459 -14.02510 -13.90246 -13.33676 -13.00618 -12.91454 -12.76240 -12.28039 -12.23559 -11.82667 -11.76358 -11.58129 -11.51082 -11.32426 -11.14045 -10.95451 -10.81407 -10.71686 -10.55509 -10.34169 -10.16035 -9.93221 -9.68125 -8.95099 -8.52760 -8.26155 -8.13911 -6.01467 -4.03941 2.36228 3.24857 3.37403 3.39552 3.43082 3.52765 3.60491 3.84364 4.39327 4.49023 4.53512 4.96471 5.03681 5.14100 5.32115 5.33858 5.36789 5.48909 5.61804 5.67137 5.73101 5.79549 5.80642 5.91708 5.99191 6.10073 6.43933 6.63246 6.72523 6.80433 6.89271 6.98836 7.13058 7.50285 7.76745 8.01086 8.14294 8.20847 8.42402 9.04548 9.28501 9.61268 11.06260 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.006247 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.791398 B = 4481.378055 C = 5405.843760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.071 3.929 4 H 0.087 0.913 5 C 0.084 3.916 6 N -0.615 5.615 7 C 0.538 3.462 8 O -0.512 6.512 9 C 0.039 3.961 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.498 4.498 13 H 0.074 0.926 14 C 0.058 3.942 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.177 3.823 21 C -0.152 4.152 22 C 0.481 3.519 23 O -0.534 6.534 24 O -0.474 6.474 25 C -0.108 4.108 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.017 0.983 32 H 0.029 0.971 33 H 0.092 0.908 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.097 0.903 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 1.019 14.703 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.012 3.988 4 H 0.105 0.895 5 C -0.039 4.039 6 N -0.354 5.354 7 C 0.330 3.670 8 O -0.385 6.385 9 C 0.018 3.982 10 H 0.068 0.932 11 C -0.195 4.195 12 C -0.537 4.537 13 H 0.092 0.908 14 C -0.142 4.142 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.090 3.910 21 C -0.210 4.210 22 C 0.323 3.677 23 O -0.424 6.424 24 O -0.281 6.281 25 C -0.146 4.146 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.253 0.747 39 H 0.115 0.885 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.095 0.480 14.571 14.904 hybrid contribution 0.732 0.418 -0.768 1.140 sum -2.363 0.898 13.803 14.032 Atomic orbital electron populations 1.22822 0.80953 1.02916 1.00033 1.87959 1.19639 1.26534 1.94730 1.23382 0.94326 0.85679 0.95399 0.89492 1.22883 0.87454 0.97443 0.96169 1.48907 1.19599 1.62890 1.04041 1.21803 0.86891 0.76227 0.82075 1.90542 1.22235 1.41057 1.84643 1.18803 0.95423 0.94798 0.89219 0.93246 1.21859 1.00275 0.96542 1.00865 1.21120 1.05179 1.38405 0.88982 0.90784 1.24931 0.95001 0.95179 0.99094 1.69861 1.16100 1.43250 1.24538 0.86516 0.79595 0.79173 0.81896 1.20220 1.21433 1.20234 1.20650 0.86877 0.95870 0.87620 1.22123 1.04258 0.91879 1.02767 1.24008 0.86564 0.76101 0.80998 1.90654 1.71325 1.48012 1.32433 1.84964 1.36202 1.70332 1.36632 1.22794 0.91823 1.03784 0.96183 0.89600 0.94155 0.93561 0.89159 0.90554 0.96443 0.95130 0.88975 0.92976 0.90091 0.92046 0.89717 0.74699 0.88464 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.87 101.05 1.10 1.37 16 2 O -0.37 -4.63 9.81 -35.23 -0.35 -4.98 16 3 C 0.07 0.82 3.52 -24.58 -0.09 0.74 16 4 H 0.09 0.75 7.86 -51.93 -0.41 0.34 16 5 C 0.08 1.23 4.87 -2.53 -0.01 1.21 16 6 N -0.61 -11.15 2.80 -157.03 -0.44 -11.59 16 7 C 0.54 12.26 6.36 -10.99 -0.07 12.19 16 8 O -0.51 -12.93 12.06 -17.33 -0.21 -13.14 16 9 C 0.04 0.96 1.99 -92.92 -0.18 0.77 16 10 H 0.05 1.28 7.85 -51.93 -0.41 0.87 16 11 C -0.14 -3.14 8.78 37.15 0.33 -2.81 16 12 C -0.50 -14.07 8.38 -34.44 -0.29 -14.36 16 13 H 0.07 2.20 6.75 -52.48 -0.35 1.85 16 14 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 15 N -0.90 -25.02 11.32 55.43 0.63 -24.39 16 16 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.18 2.85 0.80 -131.97 -0.11 2.74 16 21 C -0.15 -2.40 8.35 37.16 0.31 -2.09 16 22 C 0.48 8.28 7.13 36.01 0.26 8.53 16 23 O -0.53 -9.43 16.70 -18.75 -0.31 -9.74 16 24 O -0.47 -8.42 10.29 -46.84 -0.48 -8.90 16 25 C -0.11 -1.34 5.42 -24.86 -0.13 -1.48 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.38 7.36 -51.93 -0.38 1.00 16 30 H 0.08 1.03 7.08 -51.93 -0.37 0.66 16 31 H 0.02 0.32 5.00 -51.93 -0.26 0.06 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.08 1.49 6.74 -51.93 -0.35 1.14 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.31 7.42 -51.93 -0.39 0.93 16 38 H 0.40 5.08 9.10 45.56 0.41 5.50 16 39 H 0.10 1.15 7.38 -51.93 -0.38 0.77 16 40 H 0.10 1.10 7.83 -51.93 -0.41 0.69 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -33.32 321.01 -5.18 -38.50 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.85 Total: 4.25 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 1.01 Total: 8.34 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.19 Total: -35.98 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.35 Total: -36.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.32 -5.18 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599129488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.185 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds