Wall clock time and date at job start Tue Mar 31 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99837 * 2 1 4 4 H 1.09002 * 110.88624 * 29.29947 * 3 2 1 5 5 C 1.54909 * 111.00614 * 265.41540 * 3 2 1 6 6 N 1.47423 * 104.83351 * 278.90217 * 5 3 2 7 7 C 1.34774 * 125.64935 * 155.83866 * 6 5 3 8 8 O 1.21282 * 120.00096 * 180.02562 * 7 6 5 9 9 C 1.50703 * 119.99909 * 0.02562 * 7 6 5 10 10 H 1.09006 * 109.46865 * 299.99965 * 9 7 6 11 11 C 1.52994 * 109.47286 * 60.00184 * 9 7 6 12 12 C 1.50703 * 109.47330 * 180.02562 * 9 7 6 13 13 H 1.08005 * 119.99756 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00337 * 180.02562 * 12 9 7 15 15 N 1.31513 * 119.99608 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 119.99999 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47246 * 60.00078 * 16 14 12 18 18 H 1.48506 * 109.47196 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47200 * 299.99919 * 16 14 12 20 20 C 1.47016 * 108.70440 * 335.86643 * 6 5 3 21 21 C 1.53000 * 109.88270 * 120.47489 * 20 6 5 22 22 C 1.50699 * 109.88830 * 241.49200 * 20 6 5 23 23 O 1.20820 * 120.00481 * 143.54603 * 22 20 6 24 24 O 1.34229 * 119.99442 * 323.54813 * 22 20 6 25 25 C 1.54383 * 107.28804 * 1.09781 * 20 6 5 26 26 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47462 * 300.00071 * 1 2 3 28 28 H 1.09004 * 109.47030 * 59.99812 * 1 2 3 29 29 H 1.09000 * 110.36449 * 37.73860 * 5 3 2 30 30 H 1.09002 * 110.36898 * 160.05791 * 5 3 2 31 31 H 1.08999 * 109.47326 * 300.00246 * 11 9 7 32 32 H 1.08997 * 109.47181 * 59.99994 * 11 9 7 33 33 H 1.08997 * 109.47426 * 179.97438 * 11 9 7 34 34 H 0.97000 * 119.99503 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.46696 * 61.45731 * 21 20 6 36 36 H 1.09000 * 109.47265 * 181.45658 * 21 20 6 37 37 H 1.08997 * 109.47641 * 301.46068 * 21 20 6 38 38 H 0.96702 * 116.99564 * 180.02562 * 24 22 20 39 39 H 1.08999 * 110.70275 * 263.79201 * 25 20 6 40 40 H 1.08993 * 110.75646 * 140.50426 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3569 2.0217 0.4984 5 6 2.3416 1.7658 -1.4415 6 7 3.6265 1.1165 -1.7590 7 6 4.0820 0.8395 -2.9968 8 8 5.1587 0.3000 -3.1402 9 6 3.2533 1.2001 -4.2028 10 1 2.2949 0.6831 -4.1529 11 6 3.0168 2.7115 -4.2256 12 6 3.9822 0.7863 -5.4552 13 1 4.9490 0.3101 -5.3850 14 6 3.4153 1.0165 -6.6908 15 7 2.2382 1.5967 -6.7763 16 14 4.3192 0.5041 -8.2432 17 1 4.5482 -0.9630 -8.2213 18 1 3.5025 0.8594 -9.4316 19 1 5.6249 1.2081 -8.3108 20 6 4.3286 0.8205 -0.5016 21 6 4.5807 -0.6843 -0.3882 22 6 5.6386 1.5641 -0.4587 23 8 6.0438 2.0144 0.5867 24 8 6.3554 1.7262 -1.5819 25 6 3.4173 1.2877 0.6536 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.5676 1.4334 -2.1332 30 1 2.4450 2.8502 -1.4792 31 1 2.4894 3.0105 -3.3198 32 1 3.9751 3.2285 -4.2755 33 1 2.4178 2.9724 -5.0981 34 1 1.8392 1.7583 -7.6456 35 1 5.2137 -1.0099 -1.2137 36 1 5.0780 -0.8991 0.5577 37 1 3.6300 -1.2160 -0.4277 38 1 7.1893 2.2098 -1.5046 39 1 3.6999 2.2860 0.9878 40 1 3.4491 0.5794 1.4814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599129488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:53 Heat of formation + Delta-G solvation = -183.068511 kcal Electronic energy + Delta-G solvation = -24660.344703 eV Core-core repulsion = 21053.875811 eV Total energy + Delta-G solvation = -3606.468891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16958 -40.42990 -39.22738 -37.32371 -36.93350 -35.79904 -33.52260 -31.75798 -31.50634 -27.38328 -27.34808 -27.01627 -25.72705 -24.29119 -22.84377 -21.55824 -20.18239 -18.95098 -18.32921 -18.06133 -17.73909 -17.20914 -16.75242 -16.41458 -16.03721 -15.89450 -15.47242 -15.31303 -14.90164 -14.49061 -14.35543 -13.94737 -13.80955 -13.44629 -13.26552 -13.11390 -12.93007 -12.80074 -12.65176 -12.63130 -12.53662 -12.40825 -12.36271 -12.17807 -11.96660 -11.74592 -11.56516 -11.02261 -10.61654 -10.55088 -10.12611 -9.58599 -8.13469 -6.23006 1.01840 1.41307 1.42689 1.51103 1.89873 2.08370 2.23517 2.46388 2.78363 3.16158 3.29859 3.50184 3.84604 4.03993 4.18276 4.30049 4.37232 4.51466 4.57524 4.64023 4.70893 4.73388 4.75732 4.79304 4.80496 4.91323 4.99185 5.01450 5.03092 5.16867 5.37961 5.50720 5.56455 5.75605 5.96380 6.23312 6.31631 6.66376 6.86261 6.96041 7.42806 7.58614 8.92352 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.006247 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.791398 B = 4481.378055 C = 5405.843760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.084 3.916 4 H 0.130 0.870 5 C 0.070 3.930 6 N -0.612 5.612 7 C 0.538 3.462 8 O -0.548 6.548 9 C 0.036 3.964 10 H 0.034 0.966 11 C -0.122 4.122 12 C -0.526 4.526 13 H 0.049 0.951 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.953 3.047 17 H -0.277 1.277 18 H -0.275 1.275 19 H -0.277 1.277 20 C 0.168 3.832 21 C -0.146 4.146 22 C 0.481 3.519 23 O -0.539 6.539 24 O -0.495 6.495 25 C -0.099 4.099 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.264 0.736 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.412 0.588 39 H 0.109 0.891 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 1.710 16.441 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.025 3.975 4 H 0.148 0.852 5 C -0.052 4.052 6 N -0.349 5.349 7 C 0.329 3.671 8 O -0.424 6.424 9 C 0.015 3.985 10 H 0.051 0.949 11 C -0.180 4.180 12 C -0.565 4.565 13 H 0.067 0.933 14 C -0.178 4.178 15 N -0.550 5.550 16 Si 0.779 3.221 17 H -0.203 1.203 18 H -0.199 1.199 19 H -0.202 1.202 20 C 0.081 3.919 21 C -0.203 4.203 22 C 0.323 3.677 23 O -0.430 6.430 24 O -0.305 6.305 25 C -0.137 4.137 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.272 0.728 39 H 0.127 0.873 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.207 1.194 16.345 16.920 hybrid contribution 1.049 0.189 -1.269 1.657 sum -3.158 1.383 15.076 15.465 Atomic orbital electron populations 1.22999 0.79385 1.03707 1.01148 1.87936 1.21444 1.27144 1.94677 1.23397 0.94690 0.86386 0.93015 0.85210 1.23227 0.85400 0.98192 0.98412 1.48660 1.20906 1.61825 1.03507 1.21251 0.86210 0.76342 0.83275 1.90517 1.23505 1.42739 1.85616 1.18678 0.94537 0.95718 0.89539 0.94869 1.21654 0.99541 0.95044 1.01737 1.21275 1.04792 1.39272 0.91148 0.93272 1.25558 0.95764 0.95072 1.01430 1.69939 1.16639 1.43179 1.25279 0.85688 0.78666 0.78622 0.79101 1.20295 1.19938 1.20234 1.21041 0.87073 0.95999 0.87799 1.22047 1.03829 0.91847 1.02614 1.24183 0.86824 0.75968 0.80697 1.90643 1.71625 1.48316 1.32383 1.84955 1.37422 1.70777 1.37330 1.22859 0.91088 1.04764 0.94968 0.89172 0.91505 0.93870 0.90191 0.88921 0.92604 0.96344 0.91196 0.92648 0.93477 0.89632 0.89573 0.72808 0.87299 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.87 113.37 1.23 1.60 16 2 O -0.39 -8.70 9.81 -148.98 -1.46 -10.16 16 3 C 0.08 1.63 3.52 31.99 0.11 1.75 16 4 H 0.13 1.52 7.86 -2.39 -0.02 1.50 16 5 C 0.07 1.89 4.87 86.86 0.42 2.32 16 6 N -0.61 -21.76 2.80 -769.13 -2.16 -23.92 16 7 C 0.54 25.03 6.36 87.66 0.56 25.58 16 8 O -0.55 -28.71 12.06 18.84 0.23 -28.48 16 9 C 0.04 1.85 1.99 -12.29 -0.02 1.82 16 10 H 0.03 1.78 7.85 -2.38 -0.02 1.76 16 11 C -0.12 -5.59 8.78 71.98 0.63 -4.96 16 12 C -0.53 -30.68 8.38 25.60 0.21 -30.47 16 13 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 14 C 0.02 1.17 5.30 84.65 0.45 1.62 16 15 N -0.91 -51.12 11.32 21.45 0.24 -50.88 16 16 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 C 0.17 5.15 0.80 3.23 0.00 5.15 16 21 C -0.15 -4.47 8.35 71.98 0.60 -3.87 16 22 C 0.48 16.02 7.13 71.24 0.51 16.53 16 23 O -0.54 -18.04 16.70 21.98 0.37 -17.67 16 24 O -0.49 -17.67 10.29 -44.15 -0.45 -18.13 16 25 C -0.10 -2.12 5.42 31.80 0.17 -1.94 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 0.70 8.11 -2.39 -0.02 0.68 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 2.34 7.36 -2.39 -0.02 2.33 16 30 H 0.09 2.21 7.08 -2.39 -0.02 2.19 16 31 H 0.06 2.06 5.00 -2.39 -0.01 2.05 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 34 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.05 1.77 6.74 -2.38 -0.02 1.75 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 2.59 7.42 -2.39 -0.02 2.58 16 38 H 0.41 10.64 9.10 -74.06 -0.67 9.97 16 39 H 0.11 2.13 7.38 -2.39 -0.02 2.11 16 40 H 0.12 2.12 7.83 -2.39 -0.02 2.10 16 Total: -1.00 -73.49 321.01 4.06 -69.43 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.39 Total: 17.46 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 4.88 Total: 15.13 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.91 Total: -74.80 kcal Atomic # 8 Polarization: -73.12 SS G_CDS: -1.32 Total: -74.44 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.49 4.06 -69.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599129488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.636 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds