Wall clock time and date at job start Tue Mar 31 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99622 * 2 1 4 4 H 1.08991 * 110.92171 * 32.44365 * 3 2 1 5 5 C 1.54915 * 111.00154 * 268.54183 * 3 2 1 6 6 N 1.47423 * 104.83190 * 204.91931 * 5 3 2 7 7 C 1.34774 * 125.64713 * 204.16684 * 6 5 3 8 8 O 1.21282 * 120.00079 * 179.97438 * 7 6 5 9 9 C 1.50696 * 120.00148 * 359.95682 * 7 6 5 10 10 H 1.09001 * 109.47059 * 60.00392 * 9 7 6 11 11 C 1.53007 * 109.47348 * 299.99997 * 9 7 6 12 12 C 1.50699 * 109.47318 * 180.02562 * 9 7 6 13 13 H 1.08006 * 120.00178 * 0.02562 * 12 9 7 14 14 C 1.37879 * 120.00139 * 180.02562 * 12 9 7 15 15 N 1.31511 * 119.99843 * 0.02562 * 14 12 9 16 16 Si 1.86810 * 119.99914 * 180.02562 * 14 12 9 17 17 H 1.48491 * 109.46944 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46910 * 120.00131 * 16 14 12 19 19 H 1.48491 * 109.46921 * 239.99946 * 16 14 12 20 20 C 1.47026 * 108.70345 * 24.13096 * 6 5 3 21 21 C 1.52994 * 109.88163 * 239.36836 * 20 6 5 22 22 C 1.50696 * 109.87868 * 118.35637 * 20 6 5 23 23 O 1.20833 * 119.99655 * 216.44912 * 22 20 6 24 24 O 1.34222 * 120.00432 * 36.73179 * 22 20 6 25 25 C 1.54322 * 107.27078 * 358.94017 * 20 6 5 26 26 H 1.08997 * 109.47238 * 60.00278 * 1 2 3 27 27 H 1.08999 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47448 * 300.00351 * 1 2 3 29 29 H 1.08998 * 110.36315 * 86.08170 * 5 3 2 30 30 H 1.09002 * 110.45922 * 323.80985 * 5 3 2 31 31 H 1.09006 * 109.46644 * 60.00005 * 11 9 7 32 32 H 1.08997 * 109.46892 * 179.97438 * 11 9 7 33 33 H 1.09001 * 109.46848 * 300.00316 * 11 9 7 34 34 H 0.97005 * 119.99970 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.46950 * 298.28171 * 21 20 6 36 36 H 1.09003 * 109.47503 * 58.27923 * 21 20 6 37 37 H 1.08996 * 109.47445 * 178.28619 * 21 20 6 38 38 H 0.96701 * 117.00458 * 179.72178 * 24 22 20 39 39 H 1.08994 * 110.72205 * 96.16684 * 25 20 6 40 40 H 1.08995 * 110.72177 * 219.44402 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3835 2.0104 0.5462 5 6 2.2696 1.7977 -1.4458 6 7 3.3611 2.7806 -1.3196 7 6 3.6186 3.7835 -2.1824 8 8 4.5472 4.5362 -1.9776 9 6 2.7529 3.9693 -3.4019 10 1 1.7228 4.1460 -3.0926 11 6 2.8163 2.7103 -4.2690 12 6 3.2494 5.1505 -4.1952 13 1 4.1065 5.7104 -3.8510 14 6 2.6096 5.5164 -5.3604 15 7 1.5658 4.8349 -5.7793 16 14 3.2256 6.9802 -6.3441 17 1 4.4058 7.5719 -5.6645 18 1 3.6119 6.5336 -7.7067 19 1 2.1490 7.9980 -6.4435 20 6 4.1216 2.4862 -0.0963 21 6 4.0880 3.6950 0.8409 22 6 5.5479 2.1502 -0.4481 23 8 6.1411 1.3036 0.1777 24 8 6.1612 2.7952 -1.4528 25 6 3.4485 1.2739 0.5810 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.3761 2.2729 -1.8507 30 1 2.5780 0.9676 -2.0813 31 1 2.4574 1.8556 -3.6954 32 1 2.1898 2.8446 -5.1508 33 1 3.8465 2.5336 -4.5782 34 1 1.1159 5.0921 -6.5993 35 1 4.5590 4.5475 0.3514 36 1 3.0533 3.9400 1.0810 37 1 4.6277 3.4589 1.7580 38 1 7.0775 2.5481 -1.6386 39 1 3.9549 0.3485 0.3068 40 1 3.4299 1.3983 1.6637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599129489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:56 Heat of formation + Delta-G solvation = -160.506283 kcal Electronic energy + Delta-G solvation = -24464.478079 eV Core-core repulsion = 20858.987560 eV Total energy + Delta-G solvation = -3605.490519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90027 -39.07483 -38.00667 -36.27901 -35.67590 -33.86647 -31.98609 -30.46525 -29.88291 -26.59450 -26.12847 -25.15320 -24.41781 -22.69030 -21.62858 -20.22509 -18.82677 -17.61523 -17.02726 -16.61037 -16.04296 -15.71140 -15.49174 -15.11860 -14.84348 -14.51428 -14.26572 -13.99167 -13.35934 -13.21312 -13.05752 -12.86336 -12.49883 -12.21020 -12.06853 -11.70987 -11.70460 -11.40383 -11.30157 -11.16567 -11.01388 -10.86095 -10.70274 -10.60046 -10.37227 -10.20420 -9.97001 -9.72977 -8.96329 -8.59317 -8.31996 -8.26008 -6.04722 -4.07516 2.31994 3.04908 3.30380 3.31523 3.39135 3.47870 3.74274 3.81568 4.36827 4.45958 4.50596 4.80893 4.99928 5.12334 5.25368 5.28959 5.30323 5.39005 5.55907 5.61266 5.69379 5.72863 5.84996 5.85858 5.91897 5.95927 6.26611 6.59207 6.68243 6.75497 6.86178 6.95622 7.04698 7.46147 7.73353 7.96103 8.09073 8.16989 8.35627 9.01574 9.19050 9.57981 11.02955 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017692 B = 0.006036 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.265664 B = 4637.367637 C = 5703.913853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.074 3.926 4 H 0.083 0.917 5 C 0.084 3.916 6 N -0.619 5.619 7 C 0.538 3.462 8 O -0.509 6.509 9 C 0.038 3.962 10 H 0.050 0.950 11 C -0.139 4.139 12 C -0.498 4.498 13 H 0.075 0.925 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.899 3.101 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.175 3.825 21 C -0.155 4.155 22 C 0.483 3.517 23 O -0.530 6.530 24 O -0.475 6.475 25 C -0.107 4.107 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.018 0.982 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.398 0.602 39 H 0.096 0.904 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -8.163 11.829 14.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.015 3.985 4 H 0.101 0.899 5 C -0.040 4.040 6 N -0.360 5.360 7 C 0.330 3.670 8 O -0.381 6.381 9 C 0.017 3.983 10 H 0.068 0.932 11 C -0.196 4.196 12 C -0.537 4.537 13 H 0.094 0.906 14 C -0.142 4.142 15 N -0.536 5.536 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C 0.087 3.913 21 C -0.213 4.213 22 C 0.324 3.676 23 O -0.420 6.420 24 O -0.282 6.282 25 C -0.145 4.145 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.255 0.745 39 H 0.115 0.885 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.301 -7.914 11.943 14.386 hybrid contribution 0.632 0.655 -0.750 1.179 sum -0.669 -7.259 11.193 13.358 Atomic orbital electron populations 1.22847 0.80618 1.02903 1.00468 1.87908 1.20046 1.26373 1.94840 1.23336 0.94270 0.85170 0.95740 0.89947 1.22819 0.91584 0.92882 0.96673 1.48953 1.31426 1.32136 1.23470 1.21884 0.85200 0.76831 0.83088 1.90549 1.30296 1.42866 1.74414 1.18836 0.94728 0.96576 0.88176 0.93223 1.21870 1.00908 0.94651 1.02215 1.21186 1.14614 1.11406 1.06451 0.90649 1.24943 0.94911 0.97024 0.97364 1.69880 1.20617 1.39922 1.23206 0.86408 0.78891 0.82339 0.79679 1.19553 1.21087 1.21096 1.20655 0.85577 0.96848 0.88205 1.22159 1.03761 0.97400 0.98001 1.23817 0.89860 0.77245 0.76644 1.90673 1.67075 1.32464 1.51748 1.84937 1.31772 1.61826 1.49660 1.22650 0.93927 0.97211 1.00669 0.93352 0.89504 0.93905 0.89407 0.90397 0.96274 0.88938 0.95081 0.93039 0.89524 0.90656 0.91461 0.74518 0.88507 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.89 101.05 1.10 1.35 16 2 O -0.37 -4.48 10.51 -35.23 -0.37 -4.85 16 3 C 0.07 0.89 3.49 -24.58 -0.09 0.81 16 4 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 5 C 0.08 1.25 4.87 -2.53 -0.01 1.24 16 6 N -0.62 -10.91 2.80 -157.07 -0.44 -11.35 16 7 C 0.54 11.89 6.37 -10.99 -0.07 11.82 16 8 O -0.51 -12.45 12.06 -17.28 -0.21 -12.66 16 9 C 0.04 0.92 1.99 -92.92 -0.18 0.73 16 10 H 0.05 1.25 7.85 -51.93 -0.41 0.84 16 11 C -0.14 -3.17 8.78 37.16 0.33 -2.84 16 12 C -0.50 -13.81 8.37 -34.44 -0.29 -14.10 16 13 H 0.08 2.21 6.75 -52.48 -0.35 1.85 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 15 N -0.90 -24.74 11.32 55.43 0.63 -24.12 16 16 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.17 2.71 0.80 -132.00 -0.11 2.60 16 21 C -0.16 -2.18 8.35 37.15 0.31 -1.86 16 22 C 0.48 8.22 7.12 36.00 0.26 8.47 16 23 O -0.53 -9.42 16.69 -18.76 -0.31 -9.73 16 24 O -0.47 -8.29 10.31 -46.81 -0.48 -8.77 16 25 C -0.11 -1.36 5.41 -24.90 -0.13 -1.50 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 29 H 0.09 1.30 7.36 -51.93 -0.38 0.92 16 30 H 0.08 1.20 7.07 -51.93 -0.37 0.83 16 31 H 0.02 0.36 4.99 -51.93 -0.26 0.10 16 32 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.09 1.46 6.74 -51.93 -0.35 1.11 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 5.02 9.10 45.56 0.41 5.43 16 39 H 0.10 1.35 7.37 -51.93 -0.38 0.97 16 40 H 0.09 1.00 7.83 -51.93 -0.41 0.59 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -32.59 322.47 -5.22 -37.81 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.89 Total: 4.10 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 1.02 Total: 8.22 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.19 Total: -35.47 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.37 Total: -36.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.59 -5.22 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599129489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.697 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds