Wall clock time and date at job start Tue Mar 31 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99742 * 2 1 4 4 H 1.08993 * 110.88784 * 26.11711 * 3 2 1 5 5 C 1.55131 * 111.22407 * 262.20598 * 3 2 1 6 6 N 1.47428 * 104.72132 * 279.17635 * 5 3 2 7 7 C 1.34782 * 125.64801 * 155.81630 * 6 5 3 8 8 O 1.21281 * 120.00127 * 184.96908 * 7 6 5 9 9 C 1.50702 * 119.99860 * 4.97272 * 7 6 5 10 10 H 1.09002 * 109.46863 * 334.94403 * 9 7 6 11 11 C 1.52993 * 109.47239 * 214.94574 * 9 7 6 12 12 C 1.50696 * 109.47351 * 94.94484 * 9 7 6 13 13 H 1.08012 * 119.99775 * 359.97438 * 12 9 7 14 14 C 1.37870 * 120.00423 * 180.02562 * 12 9 7 15 15 N 1.31519 * 120.00405 * 180.02562 * 14 12 9 16 16 Si 1.86804 * 119.99791 * 0.02562 * 14 12 9 17 17 H 1.48504 * 109.47003 * 270.00017 * 16 14 12 18 18 H 1.48491 * 109.47153 * 30.00036 * 16 14 12 19 19 H 1.48502 * 109.47165 * 150.00329 * 16 14 12 20 20 C 1.47014 * 108.70599 * 335.55672 * 6 5 3 21 21 C 1.53003 * 109.88593 * 120.70129 * 20 6 5 22 22 C 1.50708 * 109.88394 * 241.71520 * 20 6 5 23 23 O 1.20820 * 119.99821 * 143.54317 * 22 20 6 24 24 O 1.34223 * 119.99514 * 323.54423 * 22 20 6 25 25 C 1.54321 * 107.27018 * 1.28314 * 20 6 5 26 26 H 1.08996 * 109.47052 * 300.00118 * 1 2 3 27 27 H 1.09005 * 109.47599 * 60.00242 * 1 2 3 28 28 H 1.09004 * 109.47160 * 179.97438 * 1 2 3 29 29 H 1.09005 * 110.49820 * 160.33829 * 5 3 2 30 30 H 1.08994 * 110.34530 * 37.94256 * 5 3 2 31 31 H 1.09004 * 109.47404 * 174.93305 * 11 9 7 32 32 H 1.09000 * 109.47288 * 294.93425 * 11 9 7 33 33 H 1.09003 * 109.47454 * 54.93255 * 11 9 7 34 34 H 0.97002 * 120.00289 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.46886 * 61.45461 * 21 20 6 36 36 H 1.09005 * 109.47017 * 181.45386 * 21 20 6 37 37 H 1.08998 * 109.46760 * 301.45482 * 21 20 6 38 38 H 0.96701 * 117.00155 * 179.97438 * 24 22 20 39 39 H 1.09004 * 110.72284 * 140.55873 * 25 20 6 40 40 H 1.09000 * 110.72434 * 263.65399 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0323 0.4483 5 6 2.4177 1.7388 -1.4327 6 7 3.7142 1.0780 -1.6694 7 6 4.2327 0.7750 -2.8760 8 8 5.2688 0.1490 -2.9510 9 6 3.5250 1.2140 -4.1320 10 1 2.4633 1.3457 -3.9237 11 6 3.7037 0.1497 -5.2166 12 6 4.1093 2.5190 -4.6078 13 1 4.9125 2.9844 -4.0556 14 6 3.6179 3.1197 -5.7474 15 7 4.1281 4.2584 -6.1629 16 14 2.2272 2.3160 -6.7013 17 1 2.7933 1.4025 -7.7262 18 1 1.3695 1.5422 -5.7682 19 1 1.4136 3.3643 -7.3678 20 6 4.3507 0.8101 -0.3716 21 6 4.5954 -0.6918 -0.2121 22 6 5.6576 1.5549 -0.2781 23 8 6.0090 2.0282 0.7765 24 8 6.4310 1.6922 -1.3665 25 6 3.3824 1.3033 0.7241 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.5284 2.8218 -1.4870 30 1 1.6791 1.3954 -2.1570 31 1 3.1183 0.4236 -6.0944 32 1 4.7569 0.0818 -5.4890 33 1 3.3632 -0.8145 -4.8392 34 1 3.7821 4.6812 -6.9645 35 1 5.2695 -1.0354 -0.9968 36 1 5.0436 -0.8854 0.7625 37 1 3.6475 -1.2244 -0.2884 38 1 7.2598 2.1782 -1.2576 39 1 3.3718 0.6139 1.5684 40 1 3.6501 2.3078 1.0518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599129490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:58 Heat of formation + Delta-G solvation = -155.440325 kcal Electronic energy + Delta-G solvation = -24738.153925 eV Core-core repulsion = 21132.883082 eV Total energy + Delta-G solvation = -3605.270843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84683 -39.04966 -38.03524 -36.12715 -35.60340 -33.83950 -31.83865 -30.83450 -30.51701 -26.65194 -25.96807 -25.19224 -24.34191 -22.93777 -21.79060 -19.87883 -18.62932 -17.59224 -17.03486 -16.91987 -16.59576 -15.70899 -15.45002 -15.15693 -14.99038 -14.65717 -14.01632 -13.86366 -13.33750 -13.08530 -12.95370 -12.74714 -12.51659 -12.27151 -12.13425 -12.02054 -11.77237 -11.58960 -11.57070 -11.39052 -11.08672 -10.92691 -10.81322 -10.74294 -10.28105 -10.16656 -9.76741 -9.64948 -9.21639 -8.65892 -8.61073 -8.19919 -6.16168 -4.17615 2.39822 3.22045 3.25278 3.29299 3.32882 3.43270 3.55744 3.75723 4.31505 4.37758 4.50980 4.96031 5.01802 5.09895 5.15126 5.27341 5.33524 5.50310 5.54769 5.65424 5.70962 5.73928 5.81301 5.85161 5.91686 6.03470 6.32889 6.35674 6.47001 6.51570 6.71229 6.81892 6.86033 7.08131 7.26724 7.54117 8.08985 8.25179 8.39129 8.86509 9.09470 9.42324 10.96219 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016078 B = 0.007188 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.050034 B = 3894.333683 C = 4762.063336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.071 3.929 4 H 0.090 0.910 5 C 0.085 3.915 6 N -0.610 5.610 7 C 0.561 3.439 8 O -0.526 6.526 9 C 0.002 3.998 10 H 0.041 0.959 11 C -0.136 4.136 12 C -0.505 4.505 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.276 1.276 18 H -0.267 1.267 19 H -0.296 1.296 20 C 0.180 3.820 21 C -0.153 4.153 22 C 0.482 3.518 23 O -0.533 6.533 24 O -0.475 6.475 25 C -0.110 4.110 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.400 0.600 39 H 0.098 0.902 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.193 -6.569 12.983 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C 0.013 3.987 4 H 0.108 0.892 5 C -0.038 4.038 6 N -0.348 5.348 7 C 0.352 3.648 8 O -0.400 6.400 9 C -0.019 4.019 10 H 0.059 0.941 11 C -0.193 4.193 12 C -0.543 4.543 13 H 0.096 0.904 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.192 1.192 19 H -0.223 1.223 20 C 0.092 3.908 21 C -0.210 4.210 22 C 0.323 3.677 23 O -0.423 6.423 24 O -0.283 6.283 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.257 0.743 39 H 0.117 0.883 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.734 -7.052 12.899 16.169 hybrid contribution -0.359 0.398 -0.571 0.784 sum -7.094 -6.653 12.327 15.702 Atomic orbital electron populations 1.22827 0.81045 1.02805 1.00075 1.87949 1.19549 1.26723 1.94723 1.23402 0.94484 0.85572 0.95268 0.89245 1.22850 0.86281 0.98252 0.96445 1.48610 1.20255 1.62116 1.03787 1.20936 0.84586 0.76406 0.82823 1.90557 1.23720 1.39659 1.86111 1.19321 0.96576 0.96854 0.89165 0.94131 1.21975 1.02424 0.96736 0.98199 1.20552 1.20424 1.02498 1.10823 0.90394 1.24919 0.96407 0.94634 0.96706 1.69873 1.41964 1.17158 1.24073 0.86849 0.82527 0.78260 0.80592 1.20319 1.19206 1.22332 1.20646 0.87403 0.95987 0.86734 1.22140 1.04317 0.91921 1.02667 1.23908 0.86343 0.76330 0.81093 1.90656 1.73675 1.47170 1.30776 1.84891 1.34845 1.70187 1.38359 1.22813 0.91609 1.03856 0.96459 0.94028 0.93711 0.89668 0.89837 0.89495 0.93983 0.91560 0.94936 0.92399 0.89961 0.91960 0.89839 0.74300 0.88329 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.84 101.05 1.10 1.35 16 2 O -0.37 -4.43 9.82 -35.23 -0.35 -4.78 16 3 C 0.07 0.83 3.54 -24.46 -0.09 0.74 16 4 H 0.09 0.78 7.83 -51.93 -0.41 0.38 16 5 C 0.09 1.28 6.31 -2.41 -0.02 1.27 16 6 N -0.61 -11.15 2.81 -156.92 -0.44 -11.59 16 7 C 0.56 12.40 5.83 -10.98 -0.06 12.34 16 8 O -0.53 -12.62 13.14 -16.40 -0.22 -12.83 16 9 C 0.00 0.05 1.94 -92.93 -0.18 -0.13 16 10 H 0.04 0.91 5.42 -51.93 -0.28 0.62 16 11 C -0.14 -3.06 8.18 37.15 0.30 -2.76 16 12 C -0.50 -13.90 9.13 -34.44 -0.31 -14.22 16 13 H 0.08 2.40 7.98 -52.48 -0.42 1.98 16 14 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 15 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 16 Si 0.89 21.08 24.32 -169.99 -4.13 16.95 16 17 H -0.28 -6.50 6.91 56.52 0.39 -6.11 16 18 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 19 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 20 C 0.18 2.90 0.80 -131.99 -0.11 2.80 16 21 C -0.15 -2.31 8.34 37.16 0.31 -2.00 16 22 C 0.48 8.58 7.13 36.01 0.26 8.84 16 23 O -0.53 -9.77 16.70 -18.75 -0.31 -10.08 16 24 O -0.48 -8.89 10.50 -46.54 -0.49 -9.38 16 25 C -0.11 -1.38 5.41 -24.90 -0.13 -1.51 16 26 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.30 6.86 -51.93 -0.36 0.94 16 31 H 0.04 0.94 3.42 -51.93 -0.18 0.76 16 32 H 0.07 1.56 8.02 -51.93 -0.42 1.15 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.44 6.60 -51.93 -0.34 1.10 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.22 7.42 -51.93 -0.39 0.83 16 38 H 0.40 5.63 9.10 45.56 0.41 6.04 16 39 H 0.10 1.09 7.83 -51.93 -0.41 0.69 16 40 H 0.10 1.23 7.37 -51.93 -0.38 0.85 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -34.07 319.68 -4.25 -38.32 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.87 Total: 5.62 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.97 Total: 8.74 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.33 Total: -37.37 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.36 Total: -37.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.13 Total: 16.95 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.07 -4.25 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599129490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.123 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds