Wall clock time and date at job start Tue Mar 31 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.51183 * 2 1 4 4 C 1.53296 * 109.51545 * 239.90442 * 2 1 3 5 5 N 1.47274 * 108.32289 * 292.33619 * 4 2 1 6 6 C 1.34772 * 120.95847 * 129.46439 * 5 4 2 7 7 O 1.21282 * 120.00321 * 0.02881 * 6 5 4 8 8 C 1.50704 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46959 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46773 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46633 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00452 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99625 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99815 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00165 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47542 * 89.99580 * 15 13 11 17 17 H 1.48507 * 109.47212 * 209.99936 * 15 13 11 18 18 H 1.48502 * 109.46814 * 329.99704 * 15 13 11 19 19 C 1.47153 * 118.05448 * 309.48608 * 5 4 2 20 20 C 1.53289 * 108.38653 * 50.53763 * 19 5 4 21 21 H 1.09005 * 109.55403 * 67.64153 * 20 19 5 22 22 C 1.50702 * 109.51546 * 187.76899 * 20 19 5 23 23 O 1.20825 * 119.99663 * 114.74575 * 22 20 19 24 24 O 1.34226 * 120.00064 * 294.75149 * 22 20 19 25 25 O 1.42960 * 109.22333 * 307.69699 * 20 19 5 26 26 H 1.09002 * 109.47153 * 299.99575 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99747 * 1 2 3 29 29 H 1.09005 * 109.68413 * 52.09628 * 4 2 1 30 30 H 1.08993 * 109.68696 * 172.65428 * 4 2 1 31 31 H 1.09002 * 109.47190 * 299.99855 * 8 6 5 32 32 H 1.08991 * 109.47156 * 60.00296 * 8 6 5 33 33 H 1.09002 * 109.46738 * 299.99748 * 9 8 6 34 34 H 1.08997 * 109.47017 * 59.99623 * 9 8 6 35 35 H 1.08998 * 109.47163 * 299.99900 * 10 9 8 36 36 H 1.08999 * 109.46949 * 59.99863 * 10 9 8 37 37 H 0.96998 * 119.99608 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.68343 * 290.80672 * 19 5 4 39 39 H 1.09000 * 109.70902 * 170.27586 * 19 5 4 40 40 H 0.96701 * 117.00088 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0421 -0.7245 -1.2501 5 7 1.6959 -2.1512 -1.1328 6 6 1.0708 -2.7978 -2.1365 7 8 0.7855 -2.2046 -3.1552 8 6 0.7262 -4.2579 -1.9931 9 6 0.0280 -4.7443 -3.2646 10 6 -0.3224 -6.2265 -3.1187 11 6 -1.0107 -6.7055 -4.3708 12 1 -1.1816 -6.0212 -5.1887 13 6 -1.4223 -8.0176 -4.4723 14 7 -2.0235 -8.4355 -5.5649 15 14 -1.1274 -9.2011 -3.0576 16 1 -2.2897 -9.1679 -2.1339 17 1 -0.9575 -10.5768 -3.5903 18 1 0.0995 -8.7993 -2.3238 19 6 2.0522 -2.8497 0.1125 20 6 1.5397 -2.0205 1.2955 21 1 0.4497 -2.0278 1.3011 22 6 2.0536 -2.6102 2.5837 23 8 2.8219 -1.9809 3.2719 24 8 1.6579 -3.8344 2.9664 25 8 2.0075 -0.6759 1.1657 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.5704 -0.3030 -2.1379 30 1 3.1241 -0.6141 -1.3212 31 1 1.6390 -4.8330 -1.8375 32 1 0.0621 -4.3923 -1.1394 33 1 -0.8848 -4.1692 -3.4206 34 1 0.6924 -4.6099 -4.1181 35 1 0.5901 -6.8019 -2.9625 36 1 -0.9870 -6.3604 -2.2652 37 1 -2.3134 -9.3584 -5.6361 38 1 3.1353 -2.9531 0.1784 39 1 1.5878 -3.8357 0.1267 40 1 2.0141 -4.1702 3.8003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599853074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:45 Heat of formation + Delta-G solvation = -172.114567 kcal Electronic energy + Delta-G solvation = -23122.332541 eV Core-core repulsion = 19516.338649 eV Total energy + Delta-G solvation = -3605.993892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27995 -40.13333 -38.68250 -36.52257 -35.02046 -34.45946 -33.19420 -32.05515 -29.98032 -28.82655 -26.72628 -25.43270 -23.80308 -22.51838 -20.79223 -20.11126 -19.24195 -18.60846 -17.69328 -16.95632 -16.86125 -16.68575 -16.47821 -15.77954 -15.44909 -14.96399 -14.89697 -14.45509 -14.21848 -13.73962 -13.48209 -13.19917 -12.72506 -12.60300 -12.56468 -12.35494 -12.01258 -11.94138 -11.81283 -11.65000 -11.28449 -10.99334 -10.82008 -10.77860 -10.56360 -10.05865 -9.88007 -9.73202 -9.50719 -9.16499 -8.84743 -8.52873 -6.02526 -4.00557 1.68047 2.06799 2.63056 2.65424 3.29952 3.37372 3.39692 3.56619 4.07431 4.27148 4.41641 4.45300 4.50693 4.63386 4.77468 4.82173 4.84329 5.14828 5.27038 5.30714 5.32733 5.43853 5.46980 5.49452 5.51014 5.78342 5.97885 6.02993 6.14826 6.50089 6.50313 6.63457 6.87644 7.14127 7.34041 7.41894 7.44834 7.80280 8.15093 8.56944 9.04074 9.59361 11.11163 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003943 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.593010 B = 7099.612724 C = 8209.366424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.123 0.877 4 C 0.079 3.921 5 N -0.623 5.623 6 C 0.520 3.480 7 O -0.525 6.525 8 C -0.143 4.143 9 C -0.087 4.087 10 C -0.014 4.014 11 C -0.520 4.520 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.904 5.904 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C 0.089 3.911 20 C 0.083 3.917 21 H 0.108 0.892 22 C 0.489 3.511 23 O -0.491 6.491 24 O -0.508 6.508 25 O -0.351 6.351 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 14.399 18.024 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.019 3.981 3 H 0.141 0.859 4 C -0.044 4.044 5 N -0.360 5.360 6 C 0.310 3.690 7 O -0.399 6.399 8 C -0.183 4.183 9 C -0.125 4.125 10 C -0.051 4.051 11 C -0.558 4.558 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.543 5.543 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.035 4.035 20 C 0.023 3.977 21 H 0.126 0.874 22 C 0.329 3.671 23 O -0.376 6.376 24 O -0.321 6.321 25 O -0.270 6.270 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.132 0.868 40 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 8.614 14.971 17.304 24.449 hybrid contribution 0.207 -1.028 1.180 1.579 sum 8.821 13.943 18.485 24.777 Atomic orbital electron populations 1.22418 0.95252 1.03274 1.03463 1.22777 0.94618 0.96659 0.84032 0.85899 1.22349 1.01197 0.81309 0.99534 1.48243 1.60815 1.10595 1.16337 1.21240 0.75648 0.90137 0.81974 1.90701 1.52257 1.68732 1.28253 1.21948 1.02734 0.90424 1.03166 1.21288 0.99622 0.97988 0.93644 1.19603 0.96291 0.91664 0.97585 1.21152 1.37265 0.96167 1.01182 0.90943 1.25054 0.94668 0.98217 0.95671 1.69924 1.40458 1.16843 1.27089 0.86764 0.79146 0.80340 0.82915 1.20324 1.21441 1.19031 1.22215 1.02008 0.96778 0.82512 1.21686 1.00572 0.85262 0.90192 0.87411 1.22583 0.78369 0.79380 0.86769 1.90762 1.32191 1.60601 1.54052 1.84483 1.69401 1.32683 1.45546 1.88077 1.71954 1.22589 1.44355 0.91384 0.91846 0.90525 0.87437 0.90516 0.89143 0.89174 0.92034 0.91993 0.96634 0.97062 0.92771 0.89843 0.86790 0.72151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 8.81 37.16 0.33 -1.18 16 2 C 0.08 0.63 3.92 -26.58 -0.10 0.53 16 3 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.08 0.76 6.03 -3.47 -0.02 0.74 16 5 N -0.62 -6.88 2.54 -172.18 -0.44 -7.32 16 6 C 0.52 7.55 7.71 -10.99 -0.08 7.47 16 7 O -0.52 -9.61 15.45 5.56 0.09 -9.52 16 8 C -0.14 -2.08 4.07 -27.88 -0.11 -2.19 16 9 C -0.09 -1.74 4.44 -26.73 -0.12 -1.86 16 10 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 11 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 12 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 15 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 19 C 0.09 0.78 5.81 -3.54 -0.02 0.76 16 20 C 0.08 0.74 2.91 -27.73 -0.08 0.66 16 21 H 0.11 0.85 6.25 -51.93 -0.32 0.53 16 22 C 0.49 4.49 7.66 36.01 0.28 4.77 16 23 O -0.49 -6.17 17.27 -25.45 -0.44 -6.61 16 24 O -0.51 -3.22 13.42 -39.25 -0.53 -3.74 16 25 O -0.35 -3.58 9.76 -55.11 -0.54 -4.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.58 6.11 -51.93 -0.32 0.26 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 1.13 7.08 -51.93 -0.37 0.76 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.16 8.01 -51.93 -0.42 0.75 16 32 H 0.09 1.12 7.66 -51.93 -0.40 0.72 16 33 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 35 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.11 0.88 6.06 -51.93 -0.31 0.57 16 40 H 0.42 0.90 9.10 45.56 0.41 1.31 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -36.54 329.41 -6.30 -42.84 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.03 Total: -1.73 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.48 Total: -4.21 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.34 Total: -34.60 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.42 Total: -23.99 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.54 -6.30 -42.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599853074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.270 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds