Wall clock time and date at job start Tue Mar 31 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.51183 * 2 1 4 4 C 1.53296 * 109.51545 * 239.90442 * 2 1 3 5 5 N 1.47274 * 108.32289 * 292.33619 * 4 2 1 6 6 C 1.34772 * 120.95847 * 129.46439 * 5 4 2 7 7 O 1.21282 * 120.00321 * 0.02881 * 6 5 4 8 8 C 1.50704 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46959 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46773 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46633 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00452 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99625 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99815 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00165 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47542 * 89.99580 * 15 13 11 17 17 H 1.48507 * 109.47212 * 209.99936 * 15 13 11 18 18 H 1.48502 * 109.46814 * 329.99704 * 15 13 11 19 19 C 1.47153 * 118.05448 * 309.48608 * 5 4 2 20 20 C 1.53289 * 108.38653 * 50.53763 * 19 5 4 21 21 H 1.09005 * 109.55403 * 67.64153 * 20 19 5 22 22 C 1.50702 * 109.51546 * 187.76899 * 20 19 5 23 23 O 1.20825 * 119.99663 * 114.74575 * 22 20 19 24 24 O 1.34226 * 120.00064 * 294.75149 * 22 20 19 25 25 O 1.42960 * 109.22333 * 307.69699 * 20 19 5 26 26 H 1.09002 * 109.47153 * 299.99575 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99747 * 1 2 3 29 29 H 1.09005 * 109.68413 * 52.09628 * 4 2 1 30 30 H 1.08993 * 109.68696 * 172.65428 * 4 2 1 31 31 H 1.09002 * 109.47190 * 299.99855 * 8 6 5 32 32 H 1.08991 * 109.47156 * 60.00296 * 8 6 5 33 33 H 1.09002 * 109.46738 * 299.99748 * 9 8 6 34 34 H 1.08997 * 109.47017 * 59.99623 * 9 8 6 35 35 H 1.08998 * 109.47163 * 299.99900 * 10 9 8 36 36 H 1.08999 * 109.46949 * 59.99863 * 10 9 8 37 37 H 0.96998 * 119.99608 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.68343 * 290.80672 * 19 5 4 39 39 H 1.09000 * 109.70902 * 170.27586 * 19 5 4 40 40 H 0.96701 * 117.00088 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0421 -0.7245 -1.2501 5 7 1.6959 -2.1512 -1.1328 6 6 1.0708 -2.7978 -2.1365 7 8 0.7855 -2.2046 -3.1552 8 6 0.7262 -4.2579 -1.9931 9 6 0.0280 -4.7443 -3.2646 10 6 -0.3224 -6.2265 -3.1187 11 6 -1.0107 -6.7055 -4.3708 12 1 -1.1816 -6.0212 -5.1887 13 6 -1.4223 -8.0176 -4.4723 14 7 -2.0235 -8.4355 -5.5649 15 14 -1.1274 -9.2011 -3.0576 16 1 -2.2897 -9.1679 -2.1339 17 1 -0.9575 -10.5768 -3.5903 18 1 0.0995 -8.7993 -2.3238 19 6 2.0522 -2.8497 0.1125 20 6 1.5397 -2.0205 1.2955 21 1 0.4497 -2.0278 1.3011 22 6 2.0536 -2.6102 2.5837 23 8 2.8219 -1.9809 3.2719 24 8 1.6579 -3.8344 2.9664 25 8 2.0075 -0.6759 1.1657 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.5704 -0.3030 -2.1379 30 1 3.1241 -0.6141 -1.3212 31 1 1.6390 -4.8330 -1.8375 32 1 0.0621 -4.3923 -1.1394 33 1 -0.8848 -4.1692 -3.4206 34 1 0.6924 -4.6099 -4.1181 35 1 0.5901 -6.8019 -2.9625 36 1 -0.9870 -6.3604 -2.2652 37 1 -2.3134 -9.3584 -5.6361 38 1 3.1353 -2.9531 0.1784 39 1 1.5878 -3.8357 0.1267 40 1 2.0141 -4.1702 3.8003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599853074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:44 Heat of formation + Delta-G solvation = -198.898899 kcal Electronic energy + Delta-G solvation = -23123.493997 eV Core-core repulsion = 19516.338649 eV Total energy + Delta-G solvation = -3607.155348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.04440 -40.96580 -39.60820 -37.16641 -36.17657 -35.93548 -34.26545 -33.71648 -30.80836 -30.30131 -27.78640 -26.19571 -25.34776 -23.33568 -22.08579 -21.31316 -20.15387 -19.28577 -18.88975 -18.50640 -17.72534 -17.57161 -17.37919 -16.83271 -16.38621 -16.12088 -15.78533 -15.57582 -15.45156 -14.83228 -14.63526 -14.54666 -14.12625 -13.83927 -13.38152 -13.26174 -13.20435 -13.00621 -12.64646 -12.59280 -12.50993 -12.42474 -11.97655 -11.76910 -11.70009 -11.56177 -11.47503 -11.29941 -11.27661 -10.78697 -10.72337 -9.72540 -8.25237 -6.30842 0.99883 1.41146 1.44673 1.47426 1.56540 1.57272 1.75071 2.41637 2.91584 3.10282 3.38896 3.44197 3.75383 3.78295 3.95826 4.05778 4.08001 4.19460 4.24735 4.27247 4.44083 4.56817 4.65099 4.75618 4.79084 4.86190 4.91830 4.95927 5.06556 5.15000 5.31979 5.52163 5.58243 5.62847 5.70371 5.86058 6.17460 6.33741 6.78304 6.92752 7.08035 7.33669 8.92466 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003943 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.593010 B = 7099.612724 C = 8209.366424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.144 0.856 4 C 0.075 3.925 5 N -0.614 5.614 6 C 0.521 3.479 7 O -0.575 6.575 8 C -0.134 4.134 9 C -0.080 4.080 10 C -0.009 4.009 11 C -0.539 4.539 12 H 0.019 0.981 13 C -0.004 4.004 14 N -0.958 5.958 15 Si 0.961 3.039 16 H -0.263 1.263 17 H -0.289 1.289 18 H -0.233 1.233 19 C 0.086 3.914 20 C 0.080 3.920 21 H 0.120 0.880 22 C 0.500 3.500 23 O -0.530 6.530 24 O -0.498 6.498 25 O -0.366 6.366 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.780 13.696 21.523 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.025 3.975 3 H 0.162 0.838 4 C -0.047 4.047 5 N -0.348 5.348 6 C 0.311 3.689 7 O -0.454 6.454 8 C -0.173 4.173 9 C -0.118 4.118 10 C -0.047 4.047 11 C -0.577 4.577 12 H 0.037 0.963 13 C -0.199 4.199 14 N -0.599 5.599 15 Si 0.783 3.217 16 H -0.188 1.188 17 H -0.215 1.215 18 H -0.156 1.156 19 C -0.037 4.037 20 C 0.021 3.979 21 H 0.137 0.863 22 C 0.341 3.659 23 O -0.419 6.419 24 O -0.313 6.313 25 O -0.286 6.286 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.150 0.850 40 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 9.739 14.277 20.859 27.088 hybrid contribution -0.169 -0.767 0.019 0.786 sum 9.570 13.510 20.878 26.646 Atomic orbital electron populations 1.22399 0.95160 1.02738 1.03874 1.22849 0.94628 0.97281 0.82749 0.83837 1.22476 1.01754 0.80563 0.99891 1.48164 1.59227 1.11187 1.16227 1.21175 0.75585 0.90151 0.81944 1.90695 1.54607 1.69653 1.30399 1.21816 1.03981 0.90656 1.00889 1.21047 0.98755 0.96091 0.95951 1.19548 0.96466 0.93472 0.95167 1.21570 1.38063 0.95876 1.02231 0.96284 1.26201 0.94050 1.00525 0.99158 1.70114 1.42102 1.17605 1.30103 0.85511 0.80705 0.76744 0.78764 1.18835 1.21492 1.15600 1.22427 1.02871 0.97250 0.81120 1.21779 1.01208 0.84803 0.90138 0.86283 1.22555 0.77347 0.79630 0.86333 1.90757 1.34073 1.61790 1.55272 1.84444 1.68911 1.31141 1.46780 1.88075 1.72338 1.23304 1.44840 0.90417 0.92819 0.90679 0.88717 0.89516 0.86410 0.86044 0.94332 0.94548 0.95079 0.95039 0.92573 0.88847 0.85005 0.69924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.81 71.98 0.63 -2.03 16 2 C 0.08 1.19 3.92 30.69 0.12 1.31 16 3 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 4 C 0.08 1.34 6.03 86.33 0.52 1.86 16 5 N -0.61 -12.21 2.54 -817.05 -2.07 -14.28 16 6 C 0.52 14.41 7.71 87.66 0.68 15.08 16 7 O -0.57 -21.36 15.45 -3.04 -0.05 -21.40 16 8 C -0.13 -3.52 4.07 29.85 0.12 -3.39 16 9 C -0.08 -3.17 4.44 30.60 0.14 -3.04 16 10 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 11 C -0.54 -31.75 9.66 25.60 0.25 -31.50 16 12 H 0.02 1.26 7.99 -2.91 -0.02 1.24 16 13 C 0.00 -0.21 5.47 84.66 0.46 0.25 16 14 N -0.96 -61.25 13.96 21.45 0.30 -60.95 16 15 Si 0.96 42.83 27.47 68.60 1.88 44.71 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.23 -9.13 6.54 99.48 0.65 -8.48 16 19 C 0.09 1.22 5.81 86.35 0.50 1.72 16 20 C 0.08 1.20 2.91 29.95 0.09 1.28 16 21 H 0.12 1.51 6.25 -2.38 -0.01 1.50 16 22 C 0.50 7.76 7.66 71.24 0.55 8.30 16 23 O -0.53 -12.32 17.27 28.38 0.49 -11.83 16 24 O -0.50 -4.45 13.42 -51.38 -0.69 -5.14 16 25 O -0.37 -6.62 9.76 -129.98 -1.27 -7.89 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.88 6.11 -2.39 -0.01 0.86 16 28 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.09 1.97 7.08 -2.38 -0.02 1.95 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.12 2.49 8.01 -2.39 -0.02 2.48 16 32 H 0.12 2.46 7.66 -2.39 -0.02 2.44 16 33 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 35 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 36 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.13 1.40 6.06 -2.39 -0.01 1.39 16 40 H 0.44 0.33 9.10 -74.06 -0.67 -0.34 16 Total: -1.00 -83.03 329.41 3.09 -79.94 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.33 Total: 7.28 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.17 Total: -10.44 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.77 Total: -75.23 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.52 Total: -46.26 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Total: -83.03 3.09 -79.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599853074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.963 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds