Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.51015 * 2 1 4 4 C 1.53711 * 109.44284 * 120.29012 * 2 1 3 5 5 N 1.47148 * 108.16112 * 172.36835 * 4 2 1 6 6 C 1.34779 * 120.98106 * 129.42911 * 5 4 2 7 7 O 1.21282 * 119.99922 * 359.72441 * 6 5 4 8 8 C 1.50699 * 120.00037 * 179.72009 * 6 5 4 9 9 C 1.53006 * 109.46866 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46957 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99773 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00296 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99310 * 15 13 11 17 17 H 1.48494 * 109.47201 * 209.99478 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99452 * 15 13 11 19 19 C 1.47148 * 118.03938 * 309.15963 * 5 4 2 20 20 C 1.53306 * 108.38359 * 50.78444 * 19 5 4 21 21 H 1.09000 * 109.50888 * 67.67345 * 20 19 5 22 22 C 1.50700 * 109.51067 * 187.77766 * 20 19 5 23 23 O 1.20827 * 119.99883 * 115.00119 * 22 20 19 24 24 O 1.34225 * 119.99839 * 294.99411 * 22 20 19 25 25 O 1.42961 * 109.50531 * 239.90012 * 2 1 3 26 26 H 1.09000 * 109.47418 * 180.10039 * 1 2 3 27 27 H 1.09005 * 109.46783 * 300.10157 * 1 2 3 28 28 H 1.08999 * 109.47544 * 60.09539 * 1 2 3 29 29 H 1.09005 * 109.83599 * 52.68881 * 4 2 1 30 30 H 1.09003 * 109.74716 * 291.99854 * 4 2 1 31 31 H 1.09000 * 109.47247 * 60.00371 * 8 6 5 32 32 H 1.09001 * 109.47358 * 299.99798 * 8 6 5 33 33 H 1.08993 * 109.46955 * 300.00219 * 9 8 6 34 34 H 1.09000 * 109.47050 * 60.00048 * 9 8 6 35 35 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 36 36 H 1.09000 * 109.47160 * 60.00369 * 10 9 8 37 37 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.68618 * 170.50607 * 19 5 4 39 39 H 1.09000 * 109.68115 * 291.02834 * 19 5 4 40 40 H 0.96704 * 117.00152 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0417 -0.7311 1.2516 5 7 3.5011 -0.8769 1.1331 6 6 4.3193 -0.5054 2.1376 7 8 3.8555 -0.0383 3.1563 8 6 5.8104 -0.6704 1.9950 9 6 6.5021 -0.1764 3.2673 10 6 8.0159 -0.3446 3.1228 11 6 8.6972 0.1413 4.3762 12 1 8.1092 0.5307 5.1942 13 6 10.0712 0.0888 4.4787 14 7 10.7872 -0.3857 3.4829 15 14 10.9156 0.6905 6.0326 16 1 11.0493 -0.4359 6.9911 17 1 12.2630 1.2139 5.6928 18 1 10.1056 1.7716 6.6492 19 6 4.0406 -1.4459 -0.1121 20 6 3.4311 -0.6849 -1.2952 21 1 3.8036 0.3395 -1.2999 22 6 3.8152 -1.3662 -2.5834 23 8 2.9647 -1.8753 -3.2744 24 8 5.1019 -1.4073 -2.9632 25 8 2.0074 -0.6758 -1.1659 26 1 -0.3634 -1.0276 0.0018 27 1 -0.3633 0.5154 0.8891 28 1 -0.3634 0.5123 -0.8908 29 1 1.5787 -1.7156 1.3201 30 1 1.8019 -0.1494 2.1417 31 1 6.1604 -0.0892 1.1419 32 1 6.0463 -1.7231 1.8390 33 1 6.2663 0.8761 3.4238 34 1 6.1521 -0.7579 4.1203 35 1 8.2514 -1.3972 2.9666 36 1 8.3663 0.2366 2.2698 37 1 11.7538 -0.4230 3.5550 38 1 5.1251 -1.3377 -0.1256 39 1 3.7760 -2.5012 -0.1783 40 1 5.2994 -1.8549 -3.7973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599916030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = -204.322107 kcal Electronic energy + Delta-G solvation = -22794.065272 eV Core-core repulsion = 19186.674755 eV Total energy + Delta-G solvation = -3607.390516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94869 -40.97126 -39.54074 -37.18111 -36.16284 -35.98874 -34.40917 -33.85770 -30.58622 -29.99655 -27.63858 -26.14578 -25.29832 -22.97859 -22.38050 -21.88470 -20.27657 -19.19359 -18.60946 -18.24549 -17.82736 -17.53668 -17.37966 -17.02508 -16.62963 -16.47587 -15.90901 -15.43776 -14.94412 -14.89216 -14.34377 -14.24832 -13.95340 -13.76312 -13.42070 -13.22101 -13.14578 -13.05152 -12.65003 -12.62275 -12.49555 -12.46066 -12.33548 -12.05422 -11.62462 -11.54473 -11.44048 -11.34683 -11.21977 -10.78184 -10.52048 -9.77539 -8.18374 -6.27773 0.97817 1.41393 1.41846 1.42995 1.53030 1.53373 1.72095 2.43073 2.83400 3.14930 3.35108 3.43228 3.73412 3.82599 3.95166 4.03976 4.12242 4.21418 4.23116 4.25954 4.44233 4.53372 4.69821 4.79070 4.80626 4.94085 4.96790 5.09098 5.17616 5.22733 5.31420 5.50657 5.56281 5.78203 5.86444 5.88801 6.12774 6.30675 6.87688 6.91348 7.03628 7.40776 8.92961 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.003414 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.373814 B = 8199.552137 C = 9318.852509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.073 0.927 4 C 0.077 3.923 5 N -0.618 5.618 6 C 0.523 3.477 7 O -0.572 6.572 8 C -0.132 4.132 9 C -0.082 4.082 10 C 0.026 3.974 11 C -0.547 4.547 12 H 0.051 0.949 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.959 3.041 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.268 1.268 19 C 0.086 3.914 20 C 0.086 3.914 21 H 0.119 0.881 22 C 0.501 3.499 23 O -0.529 6.529 24 O -0.498 6.498 25 O -0.371 6.371 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.002 0.998 36 H 0.004 0.996 37 H 0.264 0.736 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.390 -1.663 -13.648 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.021 3.979 3 H 0.091 0.909 4 C -0.045 4.045 5 N -0.352 5.352 6 C 0.314 3.686 7 O -0.451 6.451 8 C -0.171 4.171 9 C -0.121 4.121 10 C -0.011 4.011 11 C -0.585 4.585 12 H 0.069 0.931 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.784 3.216 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.193 1.193 19 C -0.037 4.037 20 C 0.026 3.974 21 H 0.137 0.863 22 C 0.342 3.658 23 O -0.418 6.418 24 O -0.313 6.313 25 O -0.290 6.290 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.147 0.853 39 H 0.111 0.889 40 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -17.900 -1.482 -13.115 22.240 hybrid contribution 0.920 -0.021 0.316 0.973 sum -16.980 -1.503 -12.800 21.317 Atomic orbital electron populations 1.21747 0.89906 1.03900 1.04059 1.22802 0.97175 0.95134 0.82782 0.90942 1.22574 0.79419 1.02627 0.99895 1.48211 1.07086 1.63617 1.16265 1.21142 0.89883 0.75643 0.81935 1.90670 1.78176 1.45985 1.30246 1.21764 0.89173 1.04987 1.01201 1.21174 0.95497 0.99705 0.95675 1.19017 0.90879 0.95622 0.95580 1.21696 0.92384 1.41748 1.02682 0.93113 1.25865 0.98319 0.95453 0.99716 1.70055 1.06370 1.47254 1.33137 0.85538 0.77771 0.78793 0.79514 1.19850 1.20394 1.19292 1.22419 1.01710 0.98304 0.81256 1.21756 0.84125 1.01378 0.90115 0.86319 1.22510 0.80662 0.76314 0.86299 1.90753 1.52150 1.43797 1.55065 1.84459 1.26278 1.73753 1.46822 1.88016 1.18074 1.78197 1.44736 0.91277 0.88732 0.90897 0.89628 0.88495 0.86839 0.87227 0.93914 0.94125 0.97981 0.97779 0.92694 0.85321 0.88910 0.69881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.57 71.98 0.69 -1.04 16 2 C 0.08 1.32 3.41 30.83 0.11 1.43 16 3 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 4 C 0.08 1.52 5.95 86.50 0.51 2.03 16 5 N -0.62 -13.84 3.01 -816.53 -2.46 -16.30 16 6 C 0.52 15.70 7.71 87.66 0.68 16.38 16 7 O -0.57 -21.86 15.45 -3.04 -0.05 -21.91 16 8 C -0.13 -3.99 4.07 29.85 0.12 -3.87 16 9 C -0.08 -3.47 4.44 30.60 0.14 -3.33 16 10 C 0.03 1.34 4.97 29.85 0.15 1.49 16 11 C -0.55 -31.54 9.11 25.60 0.23 -31.30 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 13 C 0.00 0.26 5.46 84.65 0.46 0.72 16 14 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 15 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 C 0.09 1.47 5.81 86.36 0.50 1.97 16 20 C 0.09 1.47 3.30 29.95 0.10 1.57 16 21 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 22 C 0.50 8.84 7.66 71.24 0.55 9.38 16 23 O -0.53 -13.21 17.27 28.37 0.49 -12.72 16 24 O -0.50 -5.74 13.42 -51.37 -0.69 -6.43 16 25 O -0.37 -7.50 9.56 -129.97 -1.24 -8.74 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.10 2.13 7.08 -2.39 -0.02 2.11 16 31 H 0.11 2.93 7.66 -2.39 -0.02 2.91 16 32 H 0.11 2.92 8.02 -2.39 -0.02 2.90 16 33 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 34 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 37 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.13 1.88 6.05 -2.39 -0.01 1.86 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.44 1.36 9.10 -74.05 -0.67 0.68 16 Total: -1.00 -77.27 337.76 2.96 -74.30 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 0.37 Total: 4.85 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 4.23 Total: -4.57 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -2.18 Total: -71.33 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.49 Total: -49.80 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -77.27 2.96 -74.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599916030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.018 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds