Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48493 * 109.47588 * 270.00148 * 3 2 1 5 5 H 1.48504 * 109.46901 * 30.00060 * 3 2 1 6 6 H 1.48505 * 109.47243 * 149.99759 * 3 2 1 7 7 C 1.37881 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99287 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.50693 * 109.46999 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00409 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99945 * 180.02562 * 12 11 10 15 15 C 1.46935 * 120.63425 * 179.97438 * 14 12 11 16 16 C 1.53191 * 108.77352 * 233.63170 * 15 14 12 17 17 C 1.53042 * 109.31194 * 305.36017 * 16 15 14 18 18 O 1.42898 * 109.46033 * 301.36151 * 17 16 15 19 19 C 1.50706 * 109.45574 * 181.38852 * 17 16 15 20 20 O 1.20823 * 119.99871 * 335.00150 * 19 17 16 21 21 O 1.34228 * 119.99525 * 154.99883 * 19 17 16 22 22 C 1.53040 * 109.53834 * 61.37264 * 17 16 15 23 23 C 1.46930 * 120.63018 * 0.02562 * 14 12 11 24 24 H 0.96996 * 120.00079 * 359.97438 * 1 2 3 25 25 H 1.08989 * 109.47350 * 59.99860 * 9 7 2 26 26 H 1.09000 * 109.46926 * 299.99841 * 9 7 2 27 27 H 1.09003 * 109.47175 * 60.00083 * 10 9 7 28 28 H 1.09000 * 109.47295 * 299.99699 * 10 9 7 29 29 H 1.08995 * 109.46591 * 59.99943 * 11 10 9 30 30 H 1.09000 * 109.47135 * 300.00137 * 11 10 9 31 31 H 1.09000 * 109.58469 * 113.83866 * 15 14 12 32 32 H 1.09000 * 109.58133 * 353.41627 * 15 14 12 33 33 H 1.09004 * 109.49212 * 185.41592 * 16 15 14 34 34 H 1.08991 * 109.52520 * 65.33112 * 16 15 14 35 35 H 0.96702 * 113.99989 * 180.02562 * 18 17 16 36 36 H 0.96707 * 116.99893 * 179.97438 * 21 19 17 37 37 H 1.08994 * 109.49739 * 58.57876 * 22 17 16 38 38 H 1.08994 * 109.49579 * 178.68334 * 22 17 16 39 39 H 1.09004 * 109.58767 * 246.15389 * 23 14 12 40 40 H 1.09001 * 109.58715 * 6.58115 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9872 -0.0033 12 6 2.4595 -6.1326 -0.0037 13 8 3.6519 -5.9110 -0.0031 14 7 2.0102 -7.4032 -0.0047 15 6 2.9526 -8.5305 -0.0057 16 6 2.6089 -9.4594 -1.1743 17 6 1.1378 -9.8702 -1.0786 18 8 0.9065 -10.5245 0.1706 19 6 0.8049 -10.8114 -2.2076 20 8 1.4517 -10.7837 -3.2278 21 8 -0.2101 -11.6803 -2.0797 22 6 0.2517 -8.6260 -1.1740 23 6 0.5687 -7.6876 -0.0060 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.8719 -3.6052 0.8873 28 1 2.8719 -3.6036 -0.8927 29 1 0.8533 -5.0443 -0.8931 30 1 0.8538 -5.0454 0.8869 31 1 2.8685 -9.0778 0.9332 32 1 3.9696 -8.1564 -0.1231 33 1 3.2384 -10.3482 -1.1297 34 1 2.7807 -8.9387 -2.1162 35 1 -0.0073 -10.8135 0.2999 36 1 -0.3859 -12.2636 -2.8308 37 1 0.4457 -8.1126 -2.1157 38 1 -0.7964 -8.9216 -1.1293 39 1 0.2897 -8.1661 0.9328 40 1 0.0128 -6.7574 -0.1237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -219.552222 kcal Electronic energy + Delta-G solvation = -22808.913155 eV Core-core repulsion = 19200.862212 eV Total energy + Delta-G solvation = -3608.050944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.05851 -40.93748 -39.07412 -37.32673 -36.51149 -36.12106 -34.12443 -32.89924 -32.28503 -29.76725 -27.53953 -25.84962 -24.44396 -23.69375 -22.28945 -21.36636 -20.08255 -19.27518 -18.69470 -18.55108 -18.06605 -17.06364 -16.84551 -16.77959 -16.44621 -16.24382 -15.53567 -15.51356 -14.98609 -14.78702 -14.47115 -14.22731 -13.97876 -13.79317 -13.42696 -13.25415 -13.04220 -12.79024 -12.66885 -12.61754 -12.49863 -12.42168 -12.34477 -12.27152 -11.67314 -11.54312 -11.43493 -11.24193 -11.05901 -10.69807 -10.52916 -9.71282 -8.19339 -6.28745 0.97601 1.40329 1.41089 1.52689 1.60367 1.82951 2.00250 2.42533 3.08097 3.13719 3.35129 3.42944 3.67781 3.90896 4.01618 4.16935 4.24051 4.26242 4.30677 4.49480 4.52111 4.63939 4.71430 4.79024 4.90916 4.93987 4.97930 5.11203 5.12249 5.20930 5.47884 5.52020 5.56632 5.77568 5.88192 6.27895 6.36528 6.59027 6.86456 6.86777 7.17830 7.39698 8.92105 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.002907 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.471978 B = 9628.267489 C = 9898.899970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.028 3.972 10 C -0.083 4.083 11 C -0.128 4.128 12 C 0.515 3.485 13 O -0.585 6.585 14 N -0.614 5.614 15 C 0.120 3.880 16 C -0.110 4.110 17 C 0.162 3.838 18 O -0.538 6.538 19 C 0.464 3.536 20 O -0.543 6.543 21 O -0.502 6.502 22 C -0.156 4.156 23 C 0.108 3.892 24 H 0.265 0.735 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.405 0.595 36 H 0.430 0.570 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 -26.641 -1.144 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.010 4.010 10 C -0.121 4.121 11 C -0.168 4.168 12 C 0.305 3.695 13 O -0.465 6.465 14 N -0.347 5.347 15 C -0.002 4.002 16 C -0.148 4.148 17 C 0.119 3.881 18 O -0.348 6.348 19 C 0.307 3.693 20 O -0.433 6.433 21 O -0.316 6.316 22 C -0.194 4.194 23 C -0.013 4.013 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.022 0.978 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.293 0.707 37 H 0.095 0.905 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.852 -26.061 -1.001 26.363 hybrid contribution -0.176 0.429 -0.884 0.998 sum -4.029 -25.632 -1.885 26.015 Atomic orbital electron populations 1.70055 1.07395 1.27762 1.51596 1.25874 0.95829 1.02935 0.94721 0.85528 0.78656 0.78860 0.78505 1.19795 1.20230 1.19389 1.21700 0.93304 0.92919 1.50695 0.93240 1.19004 0.94140 0.92173 0.95637 1.21177 0.97676 0.93118 1.00157 1.21709 0.97928 0.91496 1.05618 1.21161 0.89353 0.84614 0.74361 1.90654 1.19135 1.85006 1.51675 1.48252 1.08503 1.04779 1.73155 1.21463 0.93813 0.86190 0.98783 1.21793 0.92804 1.00531 0.99686 1.20869 0.97156 0.89291 0.80747 1.86610 1.36651 1.77938 1.33560 1.24603 0.76671 0.79463 0.88594 1.90754 1.51373 1.68935 1.32223 1.84437 1.48877 1.48089 1.50221 1.22634 1.01619 0.94522 1.00672 1.21941 0.79044 1.00940 0.99414 0.92652 0.97972 0.97825 0.94199 0.94353 0.87355 0.87089 0.89241 0.90562 0.89064 0.90413 0.74308 0.70747 0.90516 0.85757 0.88057 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.55 -32.29 9.11 25.60 0.23 -32.06 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.08 -3.66 4.44 30.60 0.14 -3.53 16 11 C -0.13 -4.09 4.05 29.85 0.12 -3.96 16 12 C 0.51 16.56 7.70 87.66 0.67 17.24 16 13 O -0.58 -24.17 15.39 -3.04 -0.05 -24.22 16 14 N -0.61 -14.17 2.97 -818.97 -2.43 -16.61 16 15 C 0.12 2.59 6.19 86.36 0.53 3.12 16 16 C -0.11 -2.05 4.62 30.67 0.14 -1.91 16 17 C 0.16 2.22 0.94 -11.51 -0.01 2.21 16 18 O -0.54 -5.68 11.62 -135.70 -1.58 -7.26 16 19 C 0.46 6.91 7.20 71.24 0.51 7.42 16 20 O -0.54 -12.38 16.88 21.97 0.37 -12.01 16 21 O -0.50 -3.80 12.86 -46.45 -0.60 -4.40 16 22 C -0.16 -1.81 5.06 30.66 0.16 -1.65 16 23 C 0.11 1.55 6.10 86.35 0.53 2.08 16 24 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 26 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 28 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.11 3.01 7.69 -2.39 -0.02 2.99 16 30 H 0.11 3.05 7.94 -2.39 -0.02 3.03 16 31 H 0.09 1.72 7.81 -2.39 -0.02 1.70 16 32 H 0.08 2.01 7.00 -2.39 -0.02 1.99 16 33 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.08 1.72 7.92 -2.39 -0.02 1.70 16 35 H 0.40 1.20 8.63 -74.06 -0.64 0.56 16 36 H 0.43 0.23 9.10 -74.05 -0.67 -0.45 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 1.08 7.81 -2.38 -0.02 1.07 16 40 H 0.11 1.43 5.93 -2.39 -0.01 1.42 16 Total: -1.00 -80.09 332.52 1.42 -78.67 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -0.25 Total: 2.95 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 3.64 Total: -8.72 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -2.15 Total: -72.27 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -1.85 Total: -47.89 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -80.09 1.42 -78.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.883 kcal (2) G-P(sol) polarization free energy of solvation -80.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds