Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48498 * 109.47433 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47013 * 300.00537 * 3 2 1 6 6 H 1.48505 * 109.47100 * 60.00208 * 3 2 1 7 7 C 1.37875 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47509 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47265 * 180.02562 * 11 10 9 13 13 O 1.21272 * 120.00280 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99614 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99511 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46846 * 179.97438 * 15 14 12 17 17 C 1.50701 * 110.57022 * 298.77664 * 16 15 14 18 18 O 1.20818 * 119.99983 * 241.22506 * 17 16 15 19 19 O 1.34235 * 119.99733 * 61.22175 * 17 16 15 20 20 C 1.54510 * 110.51176 * 176.09839 * 16 15 14 21 21 C 1.54486 * 104.06135 * 241.35768 * 20 16 15 22 22 O 1.44421 * 104.80269 * 336.02090 * 21 20 16 23 23 C 1.44419 * 105.27785 * 40.51394 * 22 21 20 24 24 H 0.97001 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47489 * 60.00348 * 9 7 2 26 26 H 1.08998 * 109.47355 * 300.00130 * 9 7 2 27 27 H 1.09009 * 109.46985 * 60.00424 * 10 9 7 28 28 H 1.09002 * 109.47616 * 300.00243 * 10 9 7 29 29 H 1.08999 * 109.47063 * 59.99960 * 11 10 9 30 30 H 1.09002 * 109.46915 * 300.00715 * 11 10 9 31 31 H 0.96996 * 119.99932 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.47217 * 60.00551 * 15 14 12 33 33 H 1.08998 * 109.47299 * 300.00303 * 15 14 12 34 34 H 0.96692 * 116.99959 * 180.02562 * 19 17 16 35 35 H 1.09004 * 110.51047 * 359.97438 * 20 16 15 36 36 H 1.08993 * 110.51320 * 122.71531 * 20 16 15 37 37 H 1.09003 * 110.36984 * 217.18794 * 21 20 16 38 38 H 1.08996 * 110.37119 * 94.85075 * 21 20 16 39 39 H 1.09006 * 110.37190 * 200.65887 * 23 22 21 40 40 H 1.09001 * 110.46980 * 78.36397 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1325 -0.0018 13 8 3.6518 -5.9110 -0.0032 14 7 2.0101 -7.4032 -0.0019 15 6 2.9621 -8.5167 -0.0031 16 6 2.1971 -9.8417 -0.0023 17 6 1.3456 -9.9608 1.2353 18 8 1.5387 -10.8614 2.0171 19 8 0.3726 -9.0660 1.4691 20 6 3.1766 -11.0325 -0.1020 21 6 2.7817 -11.7340 -1.4206 22 8 1.4043 -11.3592 -1.6397 23 6 1.3263 -9.9647 -1.2724 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.8725 -3.6047 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 0.8525 -5.0447 -0.8905 30 1 0.8544 -5.0449 0.8895 31 1 1.0565 -7.5804 -0.0012 32 1 3.5895 -8.4594 0.8864 33 1 3.5881 -8.4587 -0.8935 34 1 -0.1470 -9.1833 2.2761 35 1 4.2059 -10.6772 -0.1523 36 1 3.0449 -11.7072 0.7438 37 1 2.8687 -12.8155 -1.3158 38 1 3.4063 -11.3799 -2.2406 39 1 0.2951 -9.6870 -1.0538 40 1 1.7267 -9.3377 -2.0691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = -192.729958 kcal Electronic energy + Delta-G solvation = -22582.173751 eV Core-core repulsion = 18975.285909 eV Total energy + Delta-G solvation = -3606.887843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55010 -39.50506 -39.15516 -36.61085 -35.52070 -34.16986 -32.71638 -31.96165 -30.06105 -28.12783 -26.06687 -24.71384 -23.70209 -23.11179 -20.64661 -20.44032 -19.75690 -18.41120 -17.66137 -17.26941 -16.56261 -16.15197 -16.04622 -15.66547 -15.58762 -15.36419 -15.06834 -14.41393 -14.20783 -13.74135 -13.36034 -13.18531 -12.73685 -12.62770 -12.27527 -12.08446 -12.01859 -11.82944 -11.59554 -11.53067 -11.33372 -11.04091 -10.82299 -10.60378 -10.51879 -10.26242 -9.74364 -9.68540 -9.28157 -9.14284 -9.01048 -8.32443 -5.97950 -3.99222 1.69924 2.43001 2.86977 3.06486 3.33485 3.37927 3.40873 3.46576 3.74454 4.08539 4.21834 4.49273 4.54591 4.61592 4.71625 4.97501 5.08450 5.16710 5.21465 5.23556 5.28385 5.38305 5.43590 5.53866 5.71270 5.72040 6.05532 6.16920 6.23694 6.35873 6.72317 6.92744 7.15974 7.38490 7.56279 7.71245 7.83728 8.02956 8.38956 8.47050 9.08217 9.64860 11.13588 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.002773 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.268018 B =10094.735040 C =10284.782919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.515 3.485 13 O -0.538 6.538 14 N -0.740 5.740 15 C 0.137 3.863 16 C -0.099 4.099 17 C 0.498 3.502 18 O -0.505 6.505 19 O -0.510 6.510 20 C -0.145 4.145 21 C 0.045 3.955 22 O -0.368 6.368 23 C 0.057 3.943 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.406 0.594 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.417 0.583 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -24.883 -1.026 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.303 3.697 13 O -0.413 6.413 14 N -0.396 5.396 15 C 0.013 3.987 16 C -0.101 4.101 17 C 0.339 3.661 18 O -0.392 6.392 19 O -0.323 6.323 20 C -0.183 4.183 21 C -0.032 4.032 22 O -0.287 6.287 23 C -0.020 4.020 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.243 0.757 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.277 0.723 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.187 -24.933 -1.241 25.060 hybrid contribution -0.255 0.869 0.740 1.169 sum 1.931 -24.065 -0.501 24.147 Atomic orbital electron populations 1.69971 1.06030 1.26426 1.51314 1.25021 0.94856 0.99259 0.95410 0.86543 0.80237 0.83776 0.77518 1.19687 1.21045 1.21053 1.21313 0.93227 0.91018 1.49988 0.92534 1.19135 0.93972 0.91464 0.97143 1.21453 0.98644 0.91549 1.01679 1.21843 0.98105 0.93894 1.03894 1.21297 0.90415 0.83554 0.74445 1.90682 1.17353 1.84724 1.48571 1.46228 1.10311 1.05404 1.77695 1.21254 0.91535 0.81973 1.03944 1.22220 0.96048 0.98859 0.92977 1.22783 0.78353 0.78303 0.86660 1.90706 1.67947 1.33427 1.47163 1.84409 1.45672 1.53446 1.48785 1.23136 0.98997 0.95352 1.00807 1.23512 0.83120 1.01046 0.95499 1.89187 1.27266 1.24642 1.87572 1.23574 1.00949 0.84505 0.92987 0.93127 0.96577 0.96600 0.92744 0.92686 0.89248 0.89256 0.75729 0.90617 0.89495 0.72253 0.88558 0.87721 0.88281 0.91370 0.87718 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.14 -2.18 5.70 -27.88 -0.16 -2.34 16 12 C 0.51 7.78 7.83 -10.98 -0.09 7.69 16 13 O -0.54 -10.24 15.98 5.56 0.09 -10.15 16 14 N -0.74 -7.91 4.92 -60.30 -0.30 -8.21 16 15 C 0.14 1.27 4.29 -4.04 -0.02 1.26 16 16 C -0.10 -0.78 0.71 -154.09 -0.11 -0.89 16 17 C 0.50 4.51 6.91 36.01 0.25 4.76 16 18 O -0.51 -5.96 16.05 -18.74 -0.30 -6.26 16 19 O -0.51 -3.42 11.04 -39.27 -0.43 -3.85 16 20 C -0.15 -0.98 6.32 -25.16 -0.16 -1.14 16 21 C 0.04 0.29 7.63 37.94 0.29 0.58 16 22 O -0.37 -3.32 11.65 -35.23 -0.41 -3.73 16 23 C 0.06 0.42 6.14 37.94 0.23 0.66 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.20 8.10 -51.92 -0.42 0.78 16 28 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.41 3.54 6.35 -40.82 -0.26 3.29 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.42 1.30 9.10 45.56 0.41 1.72 16 35 H 0.10 0.51 7.73 -51.93 -0.40 0.10 16 36 H 0.10 0.84 6.51 -51.93 -0.34 0.50 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.70 7.66 -51.93 -0.40 0.31 16 40 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -36.10 335.90 -6.16 -42.26 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.15 Total: -0.91 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.43 Total: -4.89 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.44 Total: -34.43 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -1.06 Total: -23.99 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.10 -6.16 -42.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.469 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds