Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00215 * 2 1 4 4 H 1.48498 * 109.47433 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47013 * 300.00537 * 3 2 1 6 6 H 1.48505 * 109.47100 * 60.00208 * 3 2 1 7 7 C 1.37875 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47509 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47265 * 180.02562 * 11 10 9 13 13 O 1.21272 * 120.00280 * 359.97438 * 12 11 10 14 14 N 1.34782 * 119.99614 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99511 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46846 * 179.97438 * 15 14 12 17 17 C 1.50701 * 110.57022 * 298.77664 * 16 15 14 18 18 O 1.20818 * 119.99983 * 241.22506 * 17 16 15 19 19 O 1.34235 * 119.99733 * 61.22175 * 17 16 15 20 20 C 1.54510 * 110.51176 * 176.09839 * 16 15 14 21 21 C 1.54486 * 104.06135 * 241.35768 * 20 16 15 22 22 O 1.44421 * 104.80269 * 336.02090 * 21 20 16 23 23 C 1.44419 * 105.27785 * 40.51394 * 22 21 20 24 24 H 0.97001 * 120.00035 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47489 * 60.00348 * 9 7 2 26 26 H 1.08998 * 109.47355 * 300.00130 * 9 7 2 27 27 H 1.09009 * 109.46985 * 60.00424 * 10 9 7 28 28 H 1.09002 * 109.47616 * 300.00243 * 10 9 7 29 29 H 1.08999 * 109.47063 * 59.99960 * 11 10 9 30 30 H 1.09002 * 109.46915 * 300.00715 * 11 10 9 31 31 H 0.96996 * 119.99932 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.47217 * 60.00551 * 15 14 12 33 33 H 1.08998 * 109.47299 * 300.00303 * 15 14 12 34 34 H 0.96692 * 116.99959 * 180.02562 * 19 17 16 35 35 H 1.09004 * 110.51047 * 359.97438 * 20 16 15 36 36 H 1.08993 * 110.51320 * 122.71531 * 20 16 15 37 37 H 1.09003 * 110.36984 * 217.18794 * 21 20 16 38 38 H 1.08996 * 110.37119 * 94.85075 * 21 20 16 39 39 H 1.09006 * 110.37190 * 200.65887 * 23 22 21 40 40 H 1.09001 * 110.46980 * 78.36397 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1325 -0.0018 13 8 3.6518 -5.9110 -0.0032 14 7 2.0101 -7.4032 -0.0019 15 6 2.9621 -8.5167 -0.0031 16 6 2.1971 -9.8417 -0.0023 17 6 1.3456 -9.9608 1.2353 18 8 1.5387 -10.8614 2.0171 19 8 0.3726 -9.0660 1.4691 20 6 3.1766 -11.0325 -0.1020 21 6 2.7817 -11.7340 -1.4206 22 8 1.4043 -11.3592 -1.6397 23 6 1.3263 -9.9647 -1.2724 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 2.8725 -3.6047 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 0.8525 -5.0447 -0.8905 30 1 0.8544 -5.0449 0.8895 31 1 1.0565 -7.5804 -0.0012 32 1 3.5895 -8.4594 0.8864 33 1 3.5881 -8.4587 -0.8935 34 1 -0.1470 -9.1833 2.2761 35 1 4.2059 -10.6772 -0.1523 36 1 3.0449 -11.7072 0.7438 37 1 2.8687 -12.8155 -1.3158 38 1 3.4063 -11.3799 -2.2406 39 1 0.2951 -9.6870 -1.0538 40 1 1.7267 -9.3377 -2.0691 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -219.915296 kcal Electronic energy + Delta-G solvation = -22583.352596 eV Core-core repulsion = 18975.285909 eV Total energy + Delta-G solvation = -3608.066688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.23438 -40.60712 -39.85555 -37.29411 -36.50198 -35.98343 -34.04979 -33.41567 -30.72124 -29.73341 -27.15620 -25.59623 -25.12765 -23.81246 -22.21648 -21.31395 -20.88415 -19.16295 -18.60069 -18.29574 -17.91138 -17.42417 -16.88701 -16.64182 -16.50792 -16.35909 -16.14479 -15.78819 -15.32838 -14.85334 -14.44464 -14.20941 -13.98095 -13.75911 -13.63439 -13.19370 -13.06422 -12.74254 -12.60245 -12.56526 -12.49771 -12.36950 -12.24649 -12.11335 -11.74455 -11.52139 -11.44769 -11.23023 -10.82991 -10.75629 -10.52984 -10.14538 -8.18953 -6.28455 0.99800 1.40248 1.40888 1.54376 1.67310 1.84706 2.11612 2.43037 2.82290 3.08590 3.14245 3.47717 3.59684 3.92121 4.03338 4.09195 4.22205 4.27784 4.30943 4.39416 4.51729 4.60800 4.67726 4.76308 4.81147 4.86595 5.00640 5.01677 5.15136 5.22338 5.35920 5.50825 5.57261 5.66040 5.79040 5.89829 6.29686 6.52507 6.85401 6.87719 7.27259 7.40284 8.92694 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.034936 B = 0.002773 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.268018 B =10094.735040 C =10284.782919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.520 3.480 13 O -0.581 6.581 14 N -0.718 5.718 15 C 0.139 3.861 16 C -0.093 4.093 17 C 0.498 3.502 18 O -0.537 6.537 19 O -0.505 6.505 20 C -0.143 4.143 21 C 0.042 3.958 22 O -0.391 6.391 23 C 0.057 3.943 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.001 0.999 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.418 0.582 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.433 0.567 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -25.292 -1.471 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.171 4.171 12 C 0.308 3.692 13 O -0.461 6.461 14 N -0.374 5.374 15 C 0.015 3.985 16 C -0.095 4.095 17 C 0.341 3.659 18 O -0.427 6.427 19 O -0.320 6.320 20 C -0.181 4.181 21 C -0.034 4.034 22 O -0.310 6.310 23 C -0.020 4.020 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.257 0.743 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.296 0.704 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.226 -25.374 -1.681 25.527 hybrid contribution -0.339 0.962 0.896 1.357 sum 1.888 -24.412 -0.785 24.497 Atomic orbital electron populations 1.70069 1.07462 1.27677 1.51759 1.25891 0.95812 1.03018 0.94783 0.85468 0.78933 0.79119 0.77958 1.19212 1.20107 1.20176 1.21735 0.93346 0.92864 1.50442 0.93085 1.19026 0.94236 0.92364 0.95568 1.21166 0.97613 0.93016 1.00316 1.21679 0.97953 0.91554 1.05875 1.20997 0.89345 0.84589 0.74247 1.90675 1.18902 1.85468 1.51046 1.45976 1.11326 1.04411 1.75653 1.21327 0.91317 0.81805 1.04029 1.22182 0.96144 0.98301 0.92875 1.23018 0.78443 0.77939 0.86519 1.90701 1.68961 1.34780 1.48247 1.84365 1.45226 1.52541 1.49838 1.23142 0.99675 0.94690 1.00600 1.23682 0.82287 1.01742 0.95672 1.89165 1.28728 1.25338 1.87723 1.23660 1.01308 0.84229 0.92816 0.92700 0.97950 0.98104 0.94224 0.93930 0.87128 0.87470 0.74277 0.91460 0.88558 0.70377 0.86955 0.89070 0.87369 0.89703 0.87088 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.08 -3.53 4.44 30.59 0.14 -3.40 16 11 C -0.13 -3.98 5.70 29.85 0.17 -3.81 16 12 C 0.52 14.98 7.83 87.66 0.69 15.67 16 13 O -0.58 -21.83 15.98 -3.00 -0.05 -21.88 16 14 N -0.72 -13.84 4.92 -463.07 -2.28 -16.12 16 15 C 0.14 2.32 4.29 86.38 0.37 2.69 16 16 C -0.09 -1.30 0.71 -51.91 -0.04 -1.33 16 17 C 0.50 8.34 6.91 71.24 0.49 8.83 16 18 O -0.54 -12.32 16.05 21.99 0.35 -11.97 16 19 O -0.51 -5.77 11.04 -51.46 -0.57 -6.33 16 20 C -0.14 -1.73 6.32 31.61 0.20 -1.53 16 21 C 0.04 0.46 7.63 72.49 0.55 1.02 16 22 O -0.39 -6.37 11.65 -148.98 -1.74 -8.11 16 23 C 0.06 0.72 6.14 72.49 0.44 1.17 16 24 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 26 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.04 1.77 8.10 -2.38 -0.02 1.75 16 28 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 29 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.42 6.17 6.35 -92.71 -0.59 5.58 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.43 1.89 9.10 -74.06 -0.67 1.22 16 35 H 0.11 0.97 7.73 -2.39 -0.02 0.95 16 36 H 0.09 1.40 6.51 -2.39 -0.02 1.39 16 37 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.11 1.24 7.66 -2.38 -0.02 1.22 16 40 H 0.09 1.02 7.87 -2.39 -0.02 1.00 16 Total: -1.00 -77.84 335.90 1.70 -76.14 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -0.20 Total: 7.20 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 3.86 Total: -10.16 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -1.99 Total: -71.79 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -2.00 Total: -48.29 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -77.84 1.70 -76.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.772 kcal (2) G-P(sol) polarization free energy of solvation -77.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds