Wall clock time and date at job start Tue Mar 31 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99819 * 2 1 4 4 H 1.48491 * 109.47410 * 270.00220 * 3 2 1 5 5 H 1.48504 * 109.46876 * 30.00498 * 3 2 1 6 6 H 1.48506 * 109.47254 * 149.99980 * 3 2 1 7 7 C 1.37869 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00426 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46929 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99503 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00081 * 179.72561 * 12 11 10 15 15 C 1.46506 * 119.99968 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47161 * 179.97438 * 15 14 12 17 17 C 1.50698 * 110.45806 * 57.38940 * 16 15 14 18 18 O 1.20830 * 119.99647 * 120.70130 * 17 16 15 19 19 O 1.34224 * 120.00441 * 300.70200 * 17 16 15 20 20 C 1.54510 * 110.51069 * 179.97438 * 16 15 14 21 21 C 1.54480 * 104.06299 * 118.64116 * 20 16 15 22 22 O 1.44428 * 104.80228 * 23.97997 * 21 20 16 23 23 C 1.44422 * 105.27355 * 319.48512 * 22 21 20 24 24 H 0.96994 * 119.99926 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46736 * 59.99748 * 9 7 2 26 26 H 1.08994 * 109.47114 * 299.99983 * 9 7 2 27 27 H 1.09000 * 109.47441 * 60.00304 * 10 9 7 28 28 H 1.09002 * 109.47087 * 299.99750 * 10 9 7 29 29 H 1.09001 * 109.47671 * 60.00109 * 11 10 9 30 30 H 1.08998 * 109.47454 * 300.00107 * 11 10 9 31 31 H 0.96998 * 120.00525 * 359.97438 * 14 12 11 32 32 H 1.09004 * 109.46587 * 299.99661 * 15 14 12 33 33 H 1.08998 * 109.47213 * 59.99069 * 15 14 12 34 34 H 0.96698 * 117.00375 * 180.02562 * 19 17 16 35 35 H 1.08999 * 110.50787 * 237.28329 * 20 16 15 36 36 H 1.08993 * 110.51180 * 359.86037 * 20 16 15 37 37 H 1.09006 * 110.37290 * 142.80795 * 21 20 16 38 38 H 1.08996 * 110.37474 * 265.14939 * 21 20 16 39 39 H 1.09002 * 110.37360 * 281.67964 * 23 22 21 40 40 H 1.09004 * 110.37202 * 159.34391 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6363 -0.0009 12 6 6.0541 -4.0572 -0.0002 13 8 5.2659 -4.9790 0.0007 14 7 7.3791 -4.3034 -0.0056 15 6 7.8675 -5.6846 -0.0054 16 6 9.3975 -5.6845 -0.0128 17 6 9.9299 -4.9214 1.1726 18 8 10.6455 -5.4735 1.9745 19 8 9.6092 -3.6286 1.3376 20 6 9.9389 -7.1317 -0.0121 21 6 10.7368 -7.2345 -1.3309 22 8 11.0994 -5.8734 -1.6499 23 6 9.9323 -5.0843 -1.3319 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6802 0.8888 26 1 3.8746 -0.6799 -0.8911 27 1 3.6580 -3.1505 -0.8907 28 1 3.6587 -3.1500 0.8893 29 1 5.9150 -2.1225 0.8890 30 1 5.9150 -2.1226 -0.8909 31 1 8.0095 -3.5661 -0.0104 32 1 7.5081 -6.1969 0.8871 33 1 7.5002 -6.2000 -0.8928 34 1 9.9749 -3.1810 2.1128 35 1 10.5936 -7.2940 0.8441 36 1 9.1167 -7.8471 -0.0040 37 1 11.6307 -7.8416 -1.1872 38 1 10.1136 -7.6560 -2.1196 39 1 9.1857 -5.1760 -2.1208 40 1 10.2081 -4.0395 -1.1890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:12 Heat of formation + Delta-G solvation = -217.049725 kcal Electronic energy + Delta-G solvation = -22650.524481 eV Core-core repulsion = 19042.582054 eV Total energy + Delta-G solvation = -3607.942427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.24244 -40.59702 -39.86018 -37.30906 -36.50164 -35.98419 -34.13544 -33.45117 -30.80973 -30.07430 -27.19086 -25.51217 -25.01085 -23.78658 -22.05752 -21.33670 -20.90657 -19.21858 -18.85455 -18.30033 -17.99846 -17.40637 -16.89731 -16.65796 -16.47157 -16.22149 -16.11346 -15.78109 -15.38062 -14.85113 -14.69240 -14.37020 -13.99986 -13.81205 -13.63297 -13.20699 -13.14880 -12.74682 -12.66193 -12.57146 -12.45799 -12.25432 -12.11837 -11.77454 -11.74433 -11.69715 -11.45767 -11.29616 -10.83051 -10.79367 -10.72900 -10.13899 -8.25754 -6.31273 0.99820 1.40482 1.43986 1.55977 1.68682 1.83753 2.12742 2.41077 2.82445 3.07795 3.09637 3.48831 3.59598 3.91202 4.02877 4.09402 4.21047 4.22940 4.30004 4.39861 4.51466 4.60552 4.67271 4.76062 4.80916 4.85034 4.96680 5.00273 5.01467 5.08176 5.35508 5.51164 5.60814 5.64276 5.65844 5.70934 6.33209 6.54597 6.77963 6.86220 7.29784 7.33400 8.91993 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031165 B = 0.002976 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.224684 B = 9406.777119 C = 9659.609776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.005 4.005 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.539 4.539 8 H 0.019 0.981 9 C -0.010 4.010 10 C -0.081 4.081 11 C -0.132 4.132 12 C 0.516 3.484 13 O -0.585 6.585 14 N -0.717 5.717 15 C 0.138 3.862 16 C -0.093 4.093 17 C 0.499 3.501 18 O -0.537 6.537 19 O -0.505 6.505 20 C -0.144 4.144 21 C 0.043 3.957 22 O -0.391 6.391 23 C 0.058 3.942 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.420 0.580 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.434 0.566 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.550 -9.660 -1.440 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.577 4.577 8 H 0.038 0.962 9 C -0.047 4.047 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.304 3.696 13 O -0.465 6.465 14 N -0.374 5.374 15 C 0.014 3.986 16 C -0.095 4.095 17 C 0.341 3.659 18 O -0.426 6.426 19 O -0.319 6.319 20 C -0.182 4.182 21 C -0.033 4.033 22 O -0.310 6.310 23 C -0.019 4.019 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.260 0.740 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.297 0.703 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 28.121 -10.472 -1.629 30.052 hybrid contribution -0.272 0.908 0.847 1.271 sum 27.849 -9.565 -0.782 29.456 Atomic orbital electron populations 1.70110 1.08738 1.28253 1.52849 1.26209 0.95729 1.04169 0.93921 0.85492 0.79691 0.77016 0.79393 1.18874 1.21438 1.15717 1.21587 0.92836 0.92794 1.50517 0.96248 1.19554 0.93334 0.94477 0.97351 1.21048 0.93601 0.97016 1.00313 1.21722 0.96132 0.92623 1.06624 1.21111 0.82073 0.92106 0.74285 1.90701 1.56753 1.47957 1.51081 1.46020 1.06824 1.08935 1.75602 1.21329 0.88719 0.84640 1.03951 1.22184 0.96119 0.97451 0.93715 1.22992 0.76361 0.80818 0.85685 1.90710 1.36583 1.70043 1.45309 1.84312 1.70884 1.24207 1.52533 1.23140 1.01985 0.92281 1.00805 1.23667 1.00725 0.83978 0.94969 1.89166 1.35775 1.19242 1.86787 1.23667 0.88772 0.97125 0.92338 0.92557 0.95169 0.95133 0.94352 0.94639 0.86602 0.86207 0.74025 0.91510 0.88751 0.70271 0.89092 0.87090 0.87425 0.89740 0.88684 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.69 13.96 21.44 0.30 -61.39 16 2 C 0.00 -0.27 5.47 84.65 0.46 0.19 16 3 Si 0.96 43.38 27.47 68.60 1.88 45.27 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.23 -9.33 6.54 99.48 0.65 -8.68 16 7 C -0.54 -32.09 9.66 25.60 0.25 -31.84 16 8 H 0.02 1.30 7.99 -2.91 -0.02 1.27 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.08 -3.28 4.44 30.59 0.14 -3.14 16 11 C -0.13 -3.48 5.70 29.85 0.17 -3.31 16 12 C 0.52 13.96 7.83 87.66 0.69 14.65 16 13 O -0.59 -21.72 15.98 -3.04 -0.05 -21.77 16 14 N -0.72 -12.62 4.93 -463.05 -2.28 -14.90 16 15 C 0.14 2.17 4.31 86.38 0.37 2.54 16 16 C -0.09 -1.20 0.72 -51.91 -0.04 -1.23 16 17 C 0.50 7.66 6.90 71.24 0.49 8.15 16 18 O -0.54 -11.72 16.04 21.95 0.35 -11.37 16 19 O -0.50 -4.70 10.77 -51.36 -0.55 -5.26 16 20 C -0.14 -1.66 6.32 31.61 0.20 -1.46 16 21 C 0.04 0.44 7.63 72.49 0.55 1.00 16 22 O -0.39 -6.03 11.65 -148.98 -1.74 -7.76 16 23 C 0.06 0.67 6.35 72.49 0.46 1.13 16 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 25 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 26 H 0.03 1.28 7.57 -2.39 -0.02 1.27 16 27 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 28 H 0.03 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.42 5.25 6.13 -92.71 -0.57 4.69 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.43 0.97 9.10 -74.06 -0.67 0.30 16 35 H 0.09 1.35 6.50 -2.39 -0.02 1.34 16 36 H 0.11 0.92 7.73 -2.39 -0.02 0.91 16 37 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 0.91 7.83 -2.39 -0.02 0.89 16 40 H 0.11 1.07 7.73 -2.39 -0.02 1.05 16 Total: -1.00 -83.55 332.01 1.55 -82.00 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -0.23 Total: 8.83 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 3.86 Total: -13.66 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.98 Total: -76.29 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.99 Total: -46.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.27 kcal Total: -83.55 1.55 -82.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.047 kcal (2) G-P(sol) polarization free energy of solvation -83.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds