Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47632 * 300.00714 * 3 2 1 6 6 H 1.48511 * 109.47039 * 60.00468 * 3 2 1 7 7 C 1.37877 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47159 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72352 * 13 12 11 16 16 C 1.47424 * 125.64879 * 0.30383 * 15 13 12 17 17 C 1.54912 * 104.83227 * 204.08629 * 16 15 13 18 18 C 1.55149 * 101.58276 * 322.99076 * 17 16 15 19 19 O 1.42893 * 110.72294 * 276.95873 * 18 17 16 20 20 C 1.50709 * 110.71720 * 153.86250 * 18 17 16 21 21 O 1.20830 * 119.99838 * 266.44888 * 20 18 17 22 22 O 1.34227 * 119.99733 * 86.45803 * 20 18 17 23 23 C 1.47020 * 125.64991 * 179.97438 * 15 13 12 24 24 H 0.96995 * 120.00587 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.47277 * 59.99958 * 9 7 2 26 26 H 1.09002 * 109.46506 * 299.99678 * 9 7 2 27 27 H 1.08998 * 109.47269 * 60.00054 * 10 9 7 28 28 H 1.09003 * 109.46642 * 299.99381 * 10 9 7 29 29 H 1.09004 * 109.47131 * 59.99670 * 11 10 9 30 30 H 1.09000 * 109.47504 * 299.99974 * 11 10 9 31 31 H 1.09004 * 109.47066 * 60.00025 * 12 11 10 32 32 H 1.08994 * 109.47405 * 299.99855 * 12 11 10 33 33 H 1.08993 * 110.36793 * 322.92770 * 16 15 13 34 34 H 1.08999 * 110.36611 * 85.25030 * 16 15 13 35 35 H 1.09006 * 110.99759 * 81.06710 * 17 16 15 36 36 H 1.08998 * 111.00542 * 204.87741 * 17 16 15 37 37 H 0.96707 * 113.99814 * 298.54712 * 19 18 17 38 38 H 0.96701 * 116.99738 * 179.97438 * 22 20 18 39 39 H 1.09004 * 109.88529 * 298.40079 * 23 15 13 40 40 H 1.09000 * 109.88341 * 59.55883 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1499 -0.0005 13 6 1.7212 -7.4551 0.0007 14 8 0.5084 -7.4551 0.0016 15 7 2.3951 -8.6222 -0.0052 16 6 3.8622 -8.7673 -0.0068 17 6 4.1219 -10.1639 -0.6247 18 6 2.9424 -10.9865 -0.0423 19 8 3.2497 -11.4486 1.2745 20 6 2.6022 -12.1439 -0.9456 21 8 1.7419 -12.0223 -1.7853 22 8 3.2548 -13.3098 -0.8171 23 6 1.7890 -9.9617 -0.0042 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5571 0.8898 27 1 2.8720 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 0.8534 -5.0450 -0.8896 30 1 0.8541 -5.0446 0.8903 31 1 3.1020 -6.0921 0.8890 32 1 3.1006 -6.0923 -0.8909 33 1 4.3195 -7.9904 -0.6194 34 1 4.2487 -8.7252 1.0115 35 1 4.0715 -10.1251 -1.7129 36 1 5.0798 -10.5654 -0.2942 37 1 4.0165 -12.0364 1.3160 38 1 3.0015 -14.0232 -1.4187 39 1 1.1970 -10.1001 0.9005 40 1 1.1580 -10.0837 -0.8846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064809.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = -188.908289 kcal Electronic energy + Delta-G solvation = -22154.341806 eV Core-core repulsion = 18547.619683 eV Total energy + Delta-G solvation = -3606.722123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47031 -39.92655 -38.29888 -36.88026 -35.82010 -34.87966 -32.63164 -31.46696 -30.06694 -29.21717 -26.20602 -24.76946 -23.39005 -22.22083 -20.99630 -20.00092 -19.40852 -19.19137 -18.25712 -17.23342 -16.55248 -16.19100 -16.05013 -15.72542 -15.47737 -14.88439 -14.70910 -14.40964 -14.19429 -13.59392 -13.22718 -12.97219 -12.77652 -12.58739 -12.37244 -12.20287 -12.12390 -12.06050 -11.65877 -11.57637 -11.46345 -10.98159 -10.63258 -10.51809 -10.47053 -10.38887 -9.85859 -9.59215 -9.21164 -8.95492 -8.89270 -8.28938 -5.93424 -3.95874 1.44184 2.10529 2.66935 2.82027 3.34359 3.37798 3.41475 3.45328 3.59246 3.76940 4.36298 4.50325 4.55156 4.70887 4.75608 5.02431 5.10453 5.26505 5.30611 5.34063 5.41787 5.44052 5.47387 5.79636 5.84120 5.96841 6.15489 6.32250 6.56490 6.78770 6.85959 7.03351 7.20164 7.21517 7.30550 7.76588 7.92529 8.08214 8.15549 8.49848 9.12141 9.67702 11.17973 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047731 B = 0.002412 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.474471 B =11607.081724 C =11853.888317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.132 4.132 13 C 0.531 3.469 14 O -0.527 6.527 15 N -0.626 5.626 16 C 0.105 3.895 17 C -0.152 4.152 18 C 0.135 3.865 19 O -0.527 6.527 20 C 0.467 3.533 21 O -0.495 6.495 22 O -0.513 6.513 23 C 0.125 3.875 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.391 0.609 38 H 0.416 0.584 39 H 0.089 0.911 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.644 -28.567 -0.564 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.171 4.171 13 C 0.321 3.679 14 O -0.402 6.402 15 N -0.363 5.363 16 C -0.018 4.018 17 C -0.191 4.191 18 C 0.092 3.908 19 O -0.334 6.334 20 C 0.307 3.693 21 O -0.382 6.382 22 O -0.326 6.326 23 C 0.002 3.998 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.240 0.760 38 H 0.276 0.724 39 H 0.107 0.893 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.126 -27.637 -0.378 29.795 hybrid contribution 0.839 -0.091 -0.571 1.019 sum 11.964 -27.728 -0.949 30.214 Atomic orbital electron populations 1.69983 1.06047 1.26392 1.51037 1.25050 0.94841 0.99248 0.95510 0.86557 0.80060 0.83947 0.77532 1.19793 1.21074 1.21062 1.21318 0.93001 0.91181 1.50228 0.92707 1.19106 0.94082 0.91274 0.97359 1.21641 0.99068 0.93920 1.00066 1.21485 0.97049 0.92646 1.03101 1.21790 1.00072 0.91302 1.03983 1.20884 0.87965 0.84064 0.74987 1.90735 1.13995 1.86814 1.48664 1.48524 1.07024 1.05028 1.75747 1.22315 0.81242 0.96403 1.01832 1.23521 0.97600 0.95595 1.02344 1.21875 0.97737 0.88876 0.82358 1.86683 1.53610 1.68740 1.24387 1.23924 0.78594 0.83626 0.83178 1.90790 1.30297 1.82417 1.34659 1.84462 1.62900 1.23400 1.61800 1.21721 0.92775 0.80146 1.05127 0.93101 0.96557 0.96560 0.93446 0.93469 0.91715 0.91688 0.89003 0.89065 0.89137 0.90089 0.88783 0.87770 0.75962 0.72441 0.89298 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.29 55.43 0.74 -26.99 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.97 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.90 4.50 -26.74 -0.12 -2.03 16 12 C -0.13 -1.79 4.71 -27.88 -0.13 -1.92 16 13 C 0.53 7.91 7.85 -10.98 -0.09 7.82 16 14 O -0.53 -10.18 16.31 5.55 0.09 -10.08 16 15 N -0.63 -7.13 3.33 -170.51 -0.57 -7.69 16 16 C 0.11 0.73 6.69 -2.53 -0.02 0.72 16 17 C -0.15 -0.78 6.24 -24.59 -0.15 -0.93 16 18 C 0.14 0.99 1.22 -89.93 -0.11 0.88 16 19 O -0.53 -3.41 13.01 -46.84 -0.61 -4.02 16 20 C 0.47 3.56 7.32 36.01 0.26 3.82 16 21 O -0.50 -5.55 16.30 -18.75 -0.31 -5.86 16 22 O -0.51 -2.17 13.02 -43.89 -0.57 -2.74 16 23 C 0.13 1.38 6.18 -3.06 -0.02 1.36 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.05 7.84 -51.93 -0.41 0.64 16 33 H 0.09 0.52 7.47 -51.93 -0.39 0.13 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.49 8.04 -51.93 -0.42 0.08 16 36 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.39 0.89 8.81 45.56 0.40 1.30 16 38 H 0.42 0.23 9.10 45.56 0.41 0.65 16 39 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.10 1.28 6.74 -51.93 -0.35 0.93 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -37.99 340.83 -6.68 -44.67 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -4.51 Total: -3.25 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.06 Total: -6.15 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.17 Total: -34.68 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.40 Total: -22.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.99 -6.68 -44.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064809.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.243 kcal (2) G-P(sol) polarization free energy of solvation -37.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds