Wall clock time and date at job start Tue Mar 31 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99601 * 2 1 4 4 H 1.48505 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47345 * 300.00246 * 3 2 1 6 6 H 1.48505 * 109.47158 * 60.00560 * 3 2 1 7 7 C 1.37875 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00563 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99723 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47109 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47428 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47295 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99932 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00121 * 179.97438 * 13 12 11 16 16 C 1.47424 * 125.64793 * 359.97438 * 15 13 12 17 17 C 1.54910 * 104.83056 * 155.90334 * 16 15 13 18 18 C 1.55158 * 101.58064 * 37.01197 * 17 16 15 19 19 O 1.42900 * 110.72206 * 83.03987 * 18 17 16 20 20 C 1.50706 * 110.71573 * 206.13250 * 18 17 16 21 21 O 1.20823 * 119.99728 * 93.54928 * 20 18 17 22 22 O 1.34223 * 119.99894 * 273.54316 * 20 18 17 23 23 C 1.47016 * 125.64727 * 180.02562 * 15 13 12 24 24 H 0.96996 * 120.00380 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47351 * 59.99861 * 9 7 2 26 26 H 1.09005 * 109.47085 * 300.00039 * 9 7 2 27 27 H 1.09006 * 109.47187 * 60.00294 * 10 9 7 28 28 H 1.08998 * 109.47665 * 299.99893 * 10 9 7 29 29 H 1.09006 * 109.46294 * 60.00240 * 11 10 9 30 30 H 1.08998 * 109.47012 * 300.00785 * 11 10 9 31 31 H 1.09003 * 109.47004 * 60.00293 * 12 11 10 32 32 H 1.09005 * 109.47302 * 300.00550 * 12 11 10 33 33 H 1.09003 * 110.36604 * 37.06852 * 16 15 13 34 34 H 1.09001 * 110.45760 * 274.79064 * 16 15 13 35 35 H 1.09002 * 111.00862 * 278.93159 * 17 16 15 36 36 H 1.08997 * 111.00291 * 155.08353 * 17 16 15 37 37 H 0.96691 * 114.00103 * 63.83649 * 19 18 17 38 38 H 0.96701 * 116.99990 * 180.02562 * 22 20 18 39 39 H 1.09004 * 109.88676 * 61.61237 * 23 15 13 40 40 H 1.09001 * 109.88667 * 300.44270 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0031 13 6 1.7213 -7.4551 -0.0031 14 8 0.5085 -7.4551 -0.0022 15 7 2.3952 -8.6223 -0.0052 16 6 3.8623 -8.7673 -0.0081 17 6 4.1236 -10.1671 0.6018 18 6 2.9425 -10.9866 0.0180 19 8 3.2465 -11.4418 -1.3020 20 6 2.6047 -12.1488 0.9161 21 8 1.7467 -12.0317 1.7587 22 8 3.2570 -13.3139 0.7798 23 6 1.7891 -9.9616 -0.0060 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8727 -3.6047 0.8878 28 1 2.8714 -3.6039 -0.8922 29 1 0.8529 -5.0446 -0.8906 30 1 0.8547 -5.0450 0.8894 31 1 3.1027 -6.0926 0.8860 32 1 3.1001 -6.0918 -0.8940 33 1 4.3212 -7.9936 0.6075 34 1 4.2479 -8.7192 -1.0266 35 1 4.0761 -10.1341 1.6903 36 1 5.0803 -10.5671 0.2661 37 1 3.9905 -12.0579 -1.3439 38 1 3.0053 -14.0306 1.3783 39 1 1.1911 -10.0975 -0.9072 40 1 1.1640 -10.0863 0.8783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:12 Heat of formation + Delta-G solvation = -188.816417 kcal Electronic energy + Delta-G solvation = -22154.197377 eV Core-core repulsion = 18547.479238 eV Total energy + Delta-G solvation = -3606.718139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47706 -39.92677 -38.29383 -36.89055 -35.82343 -34.87810 -32.63080 -31.46903 -30.06315 -29.21575 -26.20487 -24.76982 -23.38571 -22.21948 -20.99949 -19.99988 -19.40852 -19.19974 -18.27482 -17.22635 -16.53734 -16.19249 -16.05821 -15.71946 -15.46749 -14.88153 -14.71330 -14.40978 -14.19823 -13.58847 -13.23269 -12.98664 -12.78462 -12.58661 -12.37731 -12.20516 -12.11909 -12.05939 -11.65757 -11.57551 -11.44461 -10.98115 -10.63507 -10.51725 -10.46982 -10.38794 -9.85747 -9.59111 -9.21145 -8.95427 -8.89031 -8.28873 -5.93366 -3.95837 1.43678 2.09787 2.67178 2.81904 3.34421 3.37151 3.41518 3.45359 3.59534 3.77539 4.36663 4.50368 4.55303 4.71179 4.75764 5.03071 5.10871 5.26467 5.30770 5.34426 5.41832 5.44006 5.47693 5.79503 5.83859 5.96987 6.15591 6.32315 6.56603 6.78684 6.86026 7.03443 7.19579 7.21587 7.30739 7.76641 7.92549 8.08262 8.15702 8.49915 9.12189 9.67756 11.18011 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.047822 B = 0.002411 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.361843 B =11609.284197 C =11857.200381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.105 4.105 12 C -0.132 4.132 13 C 0.531 3.469 14 O -0.527 6.527 15 N -0.626 5.626 16 C 0.105 3.895 17 C -0.152 4.152 18 C 0.135 3.865 19 O -0.527 6.527 20 C 0.466 3.534 21 O -0.495 6.495 22 O -0.513 6.513 23 C 0.125 3.875 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.391 0.609 38 H 0.416 0.584 39 H 0.089 0.911 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.603 -28.629 0.509 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.171 4.171 13 C 0.321 3.679 14 O -0.402 6.402 15 N -0.363 5.363 16 C -0.018 4.018 17 C -0.190 4.190 18 C 0.092 3.908 19 O -0.334 6.334 20 C 0.306 3.694 21 O -0.381 6.381 22 O -0.326 6.326 23 C 0.002 3.998 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.241 0.759 38 H 0.276 0.724 39 H 0.107 0.893 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.100 -27.677 0.325 29.822 hybrid contribution 0.827 -0.112 0.571 1.011 sum 11.926 -27.790 0.896 30.254 Atomic orbital electron populations 1.69985 1.06044 1.26387 1.51044 1.25050 0.94842 0.99245 0.95510 0.86557 0.80060 0.83952 0.77532 1.19793 1.21061 1.21074 1.21317 0.93003 0.91181 1.50221 0.92704 1.19107 0.94083 0.91274 0.97360 1.21642 0.99066 0.93918 1.00065 1.21486 0.97050 0.92647 1.03099 1.21789 1.00071 0.91303 1.03984 1.20882 0.87965 0.84064 0.74988 1.90734 1.13996 1.86814 1.48673 1.48519 1.07027 1.05025 1.75739 1.22310 0.81222 0.96360 1.01888 1.23517 0.97623 0.95593 1.02307 1.21876 0.97746 0.88890 0.82311 1.86674 1.56094 1.66612 1.24046 1.23926 0.78564 0.83702 0.83180 1.90789 1.30369 1.82557 1.34411 1.84455 1.62995 1.23271 1.61883 1.21724 0.92772 0.80168 1.05127 0.93103 0.96558 0.96560 0.93477 0.93442 0.91698 0.91706 0.89071 0.88996 0.89171 0.90076 0.88801 0.87784 0.75930 0.72407 0.89321 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 12 C -0.13 -1.79 4.71 -27.89 -0.13 -1.92 16 13 C 0.53 7.92 7.85 -10.99 -0.09 7.83 16 14 O -0.53 -10.18 16.31 5.56 0.09 -10.09 16 15 N -0.63 -7.14 3.33 -170.52 -0.57 -7.71 16 16 C 0.11 0.74 6.68 -2.53 -0.02 0.72 16 17 C -0.15 -0.78 6.24 -24.58 -0.15 -0.94 16 18 C 0.14 0.99 1.22 -89.93 -0.11 0.88 16 19 O -0.53 -3.42 13.04 -46.84 -0.61 -4.03 16 20 C 0.47 3.53 7.32 36.01 0.26 3.80 16 21 O -0.49 -5.52 16.28 -18.75 -0.31 -5.83 16 22 O -0.51 -2.13 12.97 -43.88 -0.57 -2.70 16 23 C 0.13 1.38 6.17 -3.07 -0.02 1.36 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.09 1.05 7.85 -51.93 -0.41 0.64 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 0.52 7.48 -51.93 -0.39 0.13 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.50 8.04 -51.93 -0.42 0.08 16 36 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.39 0.92 8.74 45.56 0.40 1.32 16 38 H 0.42 0.20 9.10 45.56 0.41 0.62 16 39 H 0.09 1.06 8.07 -51.93 -0.42 0.65 16 40 H 0.10 1.28 6.74 -51.93 -0.35 0.93 16 LS Contribution 340.74 15.07 5.13 5.13 Total: -1.00 -37.96 340.74 -6.68 -44.64 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.51 Total: -3.23 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -1.06 Total: -6.17 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.17 Total: -34.70 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -1.39 Total: -22.65 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.96 -6.68 -44.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.174 kcal (2) G-P(sol) polarization free energy of solvation -37.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds