Wall clock time and date at job start Tue Mar 31 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99909 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00395 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99914 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46704 * 179.97438 * 15 14 12 17 17 H 1.08999 * 110.43931 * 303.91034 * 16 15 14 18 18 C 1.54820 * 110.48707 * 66.45722 * 16 15 14 19 19 C 1.54994 * 102.09160 * 139.55252 * 18 16 15 20 20 O 1.44377 * 103.49508 * 322.97967 * 19 18 16 21 21 C 1.43743 * 106.97503 * 40.05503 * 20 19 18 22 22 H 1.08999 * 109.87507 * 92.91473 * 21 20 19 23 23 C 1.50700 * 109.88282 * 214.06450 * 21 20 19 24 24 O 1.20833 * 119.99572 * 2.83492 * 23 21 20 25 25 O 1.34222 * 120.00336 * 182.83567 * 23 21 20 26 26 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 28 28 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 29 29 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 30 30 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 32 32 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 33 33 H 0.96994 * 119.99386 * 359.97438 * 14 12 11 34 34 H 1.09001 * 109.47453 * 299.99744 * 15 14 12 35 35 H 1.08996 * 109.47366 * 60.00397 * 15 14 12 36 36 H 1.08997 * 110.90382 * 257.75526 * 18 16 15 37 37 H 1.08996 * 110.90676 * 21.32133 * 18 16 15 38 38 H 1.09006 * 110.61633 * 81.48037 * 19 18 16 39 39 H 1.09003 * 110.62000 * 204.47415 * 19 18 16 40 40 H 0.96704 * 117.00379 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 8 3.6522 -5.9108 -0.0008 14 7 2.0106 -7.4032 0.0015 15 6 2.9627 -8.5166 0.0003 16 6 2.1977 -9.8417 0.0024 17 1 1.5154 -9.8860 0.8513 18 6 1.4226 -10.0220 -1.3257 19 6 1.6402 -11.5268 -1.6268 20 8 2.9954 -11.7653 -1.1899 21 6 3.1779 -11.0303 0.0319 22 1 2.9582 -11.6708 0.8860 23 6 4.5947 -10.5241 0.1186 24 8 5.3628 -10.7189 -0.7937 25 8 5.0034 -9.8569 1.2091 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6242 -2.5567 0.8904 28 1 0.6248 -2.5571 -0.8896 29 1 2.8720 -3.6043 -0.8895 30 1 2.8721 -3.6042 0.8905 31 1 0.8542 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 1.0570 -7.5804 0.0029 34 1 3.5880 -8.4591 -0.8906 35 1 3.5906 -8.4587 0.8893 36 1 0.3638 -9.8012 -1.1911 37 1 1.8504 -9.4014 -2.1130 38 1 0.9399 -12.1374 -1.0567 39 1 1.5409 -11.7228 -2.6945 40 1 5.9209 -9.5513 1.2188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:47 Heat of formation + Delta-G solvation = -192.834325 kcal Electronic energy + Delta-G solvation = -22383.116714 eV Core-core repulsion = 18776.224345 eV Total energy + Delta-G solvation = -3606.892369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.39423 -39.61583 -39.18230 -36.52462 -35.48465 -34.44108 -32.61945 -31.98463 -30.78369 -28.07986 -26.19707 -24.24149 -23.35767 -22.35785 -20.97284 -20.91458 -19.91663 -18.40104 -17.73443 -17.43769 -16.91982 -16.24353 -16.22691 -15.81388 -15.63054 -15.19677 -14.96702 -14.48946 -13.70429 -13.61623 -13.57835 -13.37172 -13.01877 -12.81079 -12.37403 -12.16987 -11.86263 -11.58248 -11.56158 -11.48592 -11.34210 -10.94317 -10.90885 -10.71028 -10.31966 -10.09661 -9.85709 -9.82955 -9.55669 -9.13179 -8.50436 -8.29243 -6.33214 -4.01292 1.77089 2.23484 2.82314 3.01371 3.40981 3.47539 3.49574 3.68088 3.88408 4.04580 4.22354 4.53593 4.57126 4.58352 4.68760 4.77567 4.90529 5.08976 5.17050 5.17632 5.38553 5.44018 5.51369 5.55652 5.59903 5.62575 6.09150 6.11699 6.14692 6.31610 6.57722 6.74978 6.98413 7.43456 7.48446 7.50946 7.56053 8.26984 8.34298 8.51393 8.92770 9.70369 11.07689 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033540 B = 0.002687 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.620005 B =10419.059475 C =10972.555638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.600 4.600 8 H 0.049 0.951 9 C 0.007 3.993 10 C -0.088 4.088 11 C -0.139 4.139 12 C 0.513 3.487 13 O -0.535 6.535 14 N -0.737 5.737 15 C 0.109 3.891 16 C -0.124 4.124 17 H 0.109 0.891 18 C -0.155 4.155 19 C 0.046 3.954 20 O -0.347 6.347 21 C 0.097 3.903 22 H 0.115 0.885 23 C 0.477 3.523 24 O -0.491 6.491 25 O -0.510 6.510 26 H 0.267 0.733 27 H 0.007 0.993 28 H 0.006 0.994 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.551 -26.530 1.362 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.638 4.638 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.126 4.126 11 C -0.179 4.179 12 C 0.301 3.699 13 O -0.410 6.410 14 N -0.391 5.391 15 C -0.015 4.015 16 C -0.143 4.143 17 H 0.127 0.873 18 C -0.192 4.192 19 C -0.030 4.030 20 O -0.266 6.266 21 C 0.037 3.963 22 H 0.132 0.868 23 C 0.317 3.683 24 O -0.377 6.377 25 O -0.324 6.324 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.233 0.767 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 1.228 -25.034 0.981 25.083 hybrid contribution 0.174 -1.602 0.072 1.613 sum 1.402 -26.636 1.054 26.694 Atomic orbital electron populations 1.70794 1.06867 1.30454 1.47114 1.25860 0.96562 1.02753 0.93814 0.83548 0.74878 0.75283 0.76592 1.20804 1.21432 1.21424 1.22083 0.94466 0.92015 1.55256 0.93228 1.19257 0.94599 0.93288 0.95808 1.21314 0.98365 0.91010 1.01960 1.21852 0.98173 0.94163 1.03680 1.21222 0.90399 0.83596 0.74720 1.90690 1.17336 1.84651 1.48324 1.46026 1.09767 1.05595 1.77718 1.21750 0.92182 0.83850 1.03694 1.22779 0.97069 0.93821 1.00592 0.87292 1.23341 1.01742 0.97413 0.96749 1.23715 0.82923 0.94799 1.01538 1.89014 1.30888 1.68081 1.38602 1.22117 0.88916 0.94018 0.91273 0.86779 1.23030 0.90444 0.75077 0.79742 1.90769 1.55418 1.53194 1.38321 1.84502 1.37293 1.67749 1.42876 0.92231 0.97512 0.97538 0.92531 0.92498 0.89348 0.89417 0.76687 0.91659 0.88937 0.88888 0.89450 0.91131 0.87881 0.72204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.35 13.65 55.43 0.76 -27.59 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.89 29.90 -169.99 -5.08 20.81 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.66 9.11 -34.44 -0.31 -17.97 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 10 C -0.09 -1.92 4.44 -26.73 -0.12 -2.04 16 11 C -0.14 -2.22 5.70 -27.89 -0.16 -2.38 16 12 C 0.51 8.00 7.83 -10.99 -0.09 7.91 16 13 O -0.53 -10.66 15.98 5.55 0.09 -10.57 16 14 N -0.74 -7.91 5.40 -60.30 -0.33 -8.24 16 15 C 0.11 1.11 3.78 -4.04 -0.02 1.09 16 16 C -0.12 -0.80 3.11 -89.08 -0.28 -1.08 16 17 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 18 C -0.15 -0.87 6.39 -24.72 -0.16 -1.03 16 19 C 0.05 0.26 7.72 38.21 0.29 0.56 16 20 O -0.35 -3.29 10.74 -54.85 -0.59 -3.87 16 21 C 0.10 0.75 3.95 -27.31 -0.11 0.64 16 22 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 23 C 0.48 4.84 6.03 36.01 0.22 5.06 16 24 O -0.49 -6.95 17.28 -25.39 -0.44 -7.39 16 25 O -0.51 -4.03 11.13 -39.24 -0.44 -4.46 16 26 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 27 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 28 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 29 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 30 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.40 2.97 8.32 -40.82 -0.34 2.63 16 34 H 0.07 0.83 7.62 -51.93 -0.40 0.43 16 35 H 0.09 1.02 5.73 -51.93 -0.30 0.72 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.65 7.83 -51.93 -0.41 0.24 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.42 2.00 9.10 45.56 0.41 2.41 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -38.71 335.99 -7.06 -45.77 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.15 Total: -0.65 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -0.94 Total: -8.87 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.43 Total: -35.83 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.38 Total: -26.30 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -38.71 -7.06 -45.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.061 kcal (2) G-P(sol) polarization free energy of solvation -38.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds