Wall clock time and date at job start Tue Mar 31 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00271 * 180.02562 * 15 13 12 17 17 H 1.09006 * 110.45468 * 325.69699 * 16 15 13 18 18 C 1.54505 * 110.51180 * 88.30248 * 16 15 13 19 19 C 1.54796 * 103.91141 * 118.61256 * 18 16 15 20 20 O 1.44418 * 104.85782 * 336.12048 * 19 18 16 21 21 C 1.44418 * 105.27852 * 40.46050 * 20 19 18 22 22 H 1.09002 * 110.37582 * 78.31889 * 21 20 19 23 23 C 1.50703 * 110.46880 * 200.61112 * 21 20 19 24 24 O 1.20821 * 119.99735 * 0.43942 * 23 21 20 25 25 O 1.34225 * 119.99830 * 180.43217 * 23 21 20 26 26 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 28 28 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 29 29 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 32 32 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 33 33 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 34 34 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 35 35 H 0.97005 * 119.99463 * 359.97438 * 15 13 12 36 36 H 1.08998 * 110.51150 * 237.28772 * 18 16 15 37 37 H 1.08999 * 110.51490 * 359.97438 * 18 16 15 38 38 H 1.09004 * 110.38784 * 217.24612 * 19 18 16 39 39 H 1.09006 * 110.39390 * 94.99465 * 19 18 16 40 40 H 0.96702 * 116.99780 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0009 15 7 2.3950 -8.6223 -0.0018 16 6 1.6626 -9.8910 -0.0024 17 1 0.7412 -9.7992 0.5729 18 6 1.3553 -10.3381 -1.4491 19 6 2.0926 -11.6925 -1.5846 20 8 3.1432 -11.6428 -0.5949 21 6 2.5444 -11.0254 0.5652 22 1 1.9323 -11.7473 1.1059 23 6 3.6088 -10.4598 1.4697 24 8 4.7741 -10.5570 1.1656 25 8 3.2623 -9.8480 2.6131 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6248 -2.5570 0.8898 29 1 2.8726 -3.6046 0.8877 30 1 2.8713 -3.6039 -0.8923 31 1 0.8528 -5.0446 -0.8905 32 1 0.8546 -5.0450 0.8894 33 1 3.1007 -6.0922 -0.8922 34 1 3.1019 -6.0922 0.8878 35 1 3.3651 -8.6222 -0.0022 36 1 0.2823 -10.4698 -1.5884 37 1 1.7480 -9.6150 -2.1639 38 1 2.5167 -11.7957 -2.5834 39 1 1.4124 -12.5180 -1.3747 40 1 3.9801 -9.5009 3.1602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:49 Heat of formation + Delta-G solvation = -190.165566 kcal Electronic energy + Delta-G solvation = -22355.097777 eV Core-core repulsion = 18748.321134 eV Total energy + Delta-G solvation = -3606.776643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40590 -39.83136 -39.00736 -36.53578 -35.12973 -34.67673 -32.66049 -31.46976 -30.43673 -29.38810 -25.83231 -24.64474 -22.76389 -22.16158 -21.30056 -20.54905 -19.98802 -18.53057 -17.76930 -17.57849 -16.40941 -16.25768 -16.12609 -16.01451 -15.60266 -15.27911 -14.91969 -14.45455 -14.13488 -13.80361 -13.51924 -12.95931 -12.63928 -12.31516 -12.25688 -12.13807 -11.92374 -11.71951 -11.67441 -11.57222 -10.98951 -10.98694 -10.55438 -10.51650 -10.50554 -10.42070 -9.91652 -9.62361 -9.39996 -9.23172 -8.98634 -8.30441 -5.95308 -3.97794 1.62733 2.11573 2.58985 2.85751 3.34128 3.40170 3.42818 3.43451 3.91603 4.21761 4.44000 4.48708 4.51434 4.57153 4.73824 4.78628 5.07920 5.18948 5.27948 5.33608 5.37677 5.40172 5.56174 5.81791 5.97269 5.99755 6.12031 6.15537 6.28594 6.53188 6.82682 7.00128 7.17639 7.23606 7.40734 7.73983 7.89802 8.05961 8.11693 8.47916 9.09913 9.65914 11.16037 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031376 B = 0.002671 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.196534 B =10479.840343 C =10907.167383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.102 4.102 12 C -0.139 4.139 13 C 0.519 3.481 14 O -0.528 6.528 15 N -0.735 5.735 16 C 0.128 3.872 17 H 0.119 0.881 18 C -0.167 4.167 19 C 0.044 3.956 20 O -0.344 6.344 21 C 0.075 3.925 22 H 0.122 0.878 23 C 0.485 3.515 24 O -0.492 6.492 25 O -0.505 6.505 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.400 0.600 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -26.475 0.897 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.179 4.179 13 C 0.307 3.693 14 O -0.403 6.403 15 N -0.389 5.389 16 C 0.022 3.978 17 H 0.137 0.863 18 C -0.206 4.206 19 C -0.033 4.033 20 O -0.263 6.263 21 C 0.015 3.985 22 H 0.140 0.860 23 C 0.325 3.675 24 O -0.379 6.379 25 O -0.317 6.317 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.217 -26.594 0.556 26.932 hybrid contribution 1.240 1.134 0.327 1.712 sum 5.458 -25.460 0.884 26.053 Atomic orbital electron populations 1.69974 1.06047 1.26514 1.50959 1.25041 0.94841 0.99230 0.95453 0.86611 0.79831 0.83586 0.78055 1.20709 1.21249 1.19917 1.21288 0.92990 0.91212 1.50389 0.92762 1.19092 0.94040 0.91253 0.97305 1.21656 0.99097 0.93977 1.00111 1.21454 0.96957 0.92641 1.02996 1.21818 1.00175 0.91772 1.04140 1.21135 0.88462 0.85335 0.74382 1.90709 1.14051 1.87506 1.48050 1.46235 1.10088 1.05097 1.77527 1.22191 0.95957 0.82872 0.96825 0.86324 1.23527 1.02626 0.97730 0.96703 1.23656 0.89557 0.96825 0.93234 1.89283 1.34064 1.80378 1.22576 1.22723 0.91194 0.95888 0.88647 0.86028 1.22638 0.89042 0.75351 0.80432 1.90791 1.20375 1.53860 1.72829 1.84501 1.45356 1.68903 1.32972 0.93042 0.96602 0.96573 0.93462 0.93462 0.91763 0.91722 0.89036 0.89058 0.76535 0.88743 0.89280 0.87838 0.91118 0.72190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 13 C 0.52 6.84 7.83 -10.98 -0.09 6.76 16 14 O -0.53 -8.89 15.66 5.56 0.09 -8.80 16 15 N -0.73 -7.33 4.45 -52.29 -0.23 -7.57 16 16 C 0.13 1.07 3.29 -66.36 -0.22 0.86 16 17 H 0.12 1.05 7.61 -51.93 -0.40 0.66 16 18 C -0.17 -1.19 6.90 -24.99 -0.17 -1.36 16 19 C 0.04 0.26 7.64 38.10 0.29 0.55 16 20 O -0.34 -3.12 10.92 -54.44 -0.59 -3.71 16 21 C 0.08 0.57 3.78 -27.10 -0.10 0.47 16 22 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 23 C 0.49 4.32 5.82 36.01 0.21 4.53 16 24 O -0.49 -5.96 17.31 -25.27 -0.44 -6.40 16 25 O -0.50 -3.44 13.42 -39.24 -0.53 -3.96 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 3.67 7.42 -40.82 -0.30 3.36 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.74 7.96 -51.93 -0.41 0.33 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.42 1.25 9.10 45.56 0.41 1.66 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -36.59 341.83 -7.19 -43.78 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.31 Total: -0.70 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.05 Total: -7.93 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.50 Total: -34.35 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.47 Total: -22.87 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.59 -7.19 -43.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.383 kcal (2) G-P(sol) polarization free energy of solvation -36.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds