Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00271 * 180.02562 * 15 13 12 17 17 H 1.09006 * 110.45468 * 325.69699 * 16 15 13 18 18 C 1.54505 * 110.51180 * 88.30248 * 16 15 13 19 19 C 1.54796 * 103.91141 * 118.61256 * 18 16 15 20 20 O 1.44418 * 104.85782 * 336.12048 * 19 18 16 21 21 C 1.44418 * 105.27852 * 40.46050 * 20 19 18 22 22 H 1.09002 * 110.37582 * 78.31889 * 21 20 19 23 23 C 1.50703 * 110.46880 * 200.61112 * 21 20 19 24 24 O 1.20821 * 119.99735 * 0.43942 * 23 21 20 25 25 O 1.34225 * 119.99830 * 180.43217 * 23 21 20 26 26 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 28 28 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 29 29 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 32 32 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 33 33 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 34 34 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 35 35 H 0.97005 * 119.99463 * 359.97438 * 15 13 12 36 36 H 1.08998 * 110.51150 * 237.28772 * 18 16 15 37 37 H 1.08999 * 110.51490 * 359.97438 * 18 16 15 38 38 H 1.09004 * 110.38784 * 217.24612 * 19 18 16 39 39 H 1.09006 * 110.39390 * 94.99465 * 19 18 16 40 40 H 0.96702 * 116.99780 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0009 15 7 2.3950 -8.6223 -0.0018 16 6 1.6626 -9.8910 -0.0024 17 1 0.7412 -9.7992 0.5729 18 6 1.3553 -10.3381 -1.4491 19 6 2.0926 -11.6925 -1.5846 20 8 3.1432 -11.6428 -0.5949 21 6 2.5444 -11.0254 0.5652 22 1 1.9323 -11.7473 1.1059 23 6 3.6088 -10.4598 1.4697 24 8 4.7741 -10.5570 1.1656 25 8 3.2623 -9.8480 2.6131 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6248 -2.5570 0.8898 29 1 2.8726 -3.6046 0.8877 30 1 2.8713 -3.6039 -0.8923 31 1 0.8528 -5.0446 -0.8905 32 1 0.8546 -5.0450 0.8894 33 1 3.1007 -6.0922 -0.8922 34 1 3.1019 -6.0922 0.8878 35 1 3.3651 -8.6222 -0.0022 36 1 0.2823 -10.4698 -1.5884 37 1 1.7480 -9.6150 -2.1639 38 1 2.5167 -11.7957 -2.5834 39 1 1.4124 -12.5180 -1.3747 40 1 3.9801 -9.5009 3.1602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = -216.983897 kcal Electronic energy + Delta-G solvation = -22356.260707 eV Core-core repulsion = 18748.321134 eV Total energy + Delta-G solvation = -3607.939573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09347 -40.70935 -39.76880 -37.20231 -36.68546 -35.68640 -34.61639 -32.34877 -31.39979 -30.64096 -27.51720 -25.45162 -24.24211 -22.81712 -22.22700 -21.70023 -21.43707 -19.19677 -18.53177 -18.43985 -18.32261 -17.14598 -17.02305 -16.87582 -16.53168 -16.49600 -15.90429 -15.67510 -15.38151 -14.88397 -14.54192 -14.12446 -13.96762 -13.61114 -13.45299 -13.29236 -12.90353 -12.81430 -12.80430 -12.57444 -12.34629 -12.25134 -12.16465 -12.14038 -11.68158 -11.38282 -11.36443 -11.17685 -11.07000 -10.80170 -10.54743 -10.25893 -8.18732 -6.30722 0.95699 1.40413 1.42422 1.53520 1.56587 1.57456 2.01027 2.41974 2.86468 3.14010 3.30833 3.66743 3.73012 3.90107 4.00635 4.06894 4.07410 4.13509 4.23499 4.46122 4.64393 4.66150 4.76419 4.82363 4.84876 4.87908 4.98703 5.18862 5.24851 5.32400 5.38722 5.43471 5.56783 5.58337 5.78516 5.88436 6.25610 6.31604 6.85798 6.87691 7.13154 7.38872 8.93469 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031376 B = 0.002671 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.196534 B =10479.840343 C =10907.167383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.020 3.980 10 C -0.097 4.097 11 C -0.094 4.094 12 C -0.132 4.132 13 C 0.522 3.478 14 O -0.571 6.571 15 N -0.721 5.721 16 C 0.122 3.878 17 H 0.116 0.884 18 C -0.164 4.164 19 C 0.046 3.954 20 O -0.368 6.368 21 C 0.078 3.922 22 H 0.153 0.847 23 C 0.489 3.511 24 O -0.529 6.529 25 O -0.501 6.501 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.014 1.014 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.406 0.594 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.656 -27.276 1.018 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.017 4.017 10 C -0.135 4.135 11 C -0.132 4.132 12 C -0.172 4.172 13 C 0.311 3.689 14 O -0.449 6.449 15 N -0.374 5.374 16 C 0.016 3.984 17 H 0.134 0.866 18 C -0.203 4.203 19 C -0.030 4.030 20 O -0.288 6.288 21 C 0.019 3.981 22 H 0.170 0.830 23 C 0.331 3.669 24 O -0.418 6.418 25 O -0.316 6.316 26 H 0.072 0.928 27 H 0.004 0.996 28 H 0.005 0.995 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.242 0.758 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 5.878 -27.426 0.691 28.058 hybrid contribution 0.689 1.355 0.315 1.552 sum 6.567 -26.071 1.006 26.904 Atomic orbital electron populations 1.70125 1.08003 1.27756 1.51866 1.26070 0.95783 1.03651 0.94786 0.85402 0.78683 0.78167 0.78512 1.19747 1.20864 1.18411 1.21762 0.93708 0.92326 1.50274 0.91736 1.19044 0.94646 0.93635 0.94418 1.21459 0.97872 0.92946 1.01192 1.21230 0.97351 0.93263 1.01336 1.21698 0.99146 0.89861 1.06446 1.21044 0.87803 0.86135 0.73942 1.90701 1.15752 1.88074 1.50412 1.46085 1.10367 1.04969 1.75991 1.22360 0.95853 0.82245 0.97902 0.86626 1.23495 1.03368 0.98164 0.95288 1.23813 0.89279 0.96728 0.93147 1.89267 1.35555 1.80482 1.23450 1.22887 0.90785 0.96009 0.88445 0.82969 1.22904 0.88706 0.74638 0.80656 1.90780 1.21870 1.55409 1.73788 1.84484 1.46202 1.68353 1.32535 0.92825 0.99618 0.99526 0.92190 0.92299 0.93576 0.93436 0.86822 0.86603 0.75792 0.87800 0.90642 0.87036 0.88617 0.70327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.82 13.29 21.45 0.28 -58.53 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.95 5.15 30.59 0.16 -3.80 16 11 C -0.09 -3.30 4.50 30.59 0.14 -3.17 16 12 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 13 C 0.52 13.27 7.83 87.66 0.69 13.96 16 14 O -0.57 -19.26 15.66 -3.02 -0.05 -19.31 16 15 N -0.72 -13.33 4.45 -437.73 -1.95 -15.28 16 16 C 0.12 1.87 3.29 46.01 0.15 2.02 16 17 H 0.12 1.90 7.61 -2.38 -0.02 1.88 16 18 C -0.16 -2.10 6.90 31.72 0.22 -1.88 16 19 C 0.05 0.45 7.64 72.59 0.55 1.00 16 20 O -0.37 -5.98 10.92 -130.61 -1.43 -7.40 16 21 C 0.08 1.03 3.78 30.35 0.11 1.15 16 22 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 23 C 0.49 7.91 5.82 71.24 0.41 8.32 16 24 O -0.53 -12.25 17.31 28.21 0.49 -11.76 16 25 O -0.50 -5.87 13.42 -51.37 -0.69 -6.56 16 26 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 27 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.41 6.72 7.42 -92.70 -0.69 6.03 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.18 7.96 -2.39 -0.02 1.16 16 38 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.43 1.79 9.10 -74.06 -0.67 1.11 16 Total: -1.00 -80.70 341.83 1.83 -78.86 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -0.30 Total: 8.52 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 3.45 Total: -15.38 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -1.66 Total: -73.81 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.67 Total: -45.03 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -80.70 1.83 -78.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.119 kcal (2) G-P(sol) polarization free energy of solvation -80.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds