Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 O 1.21273 * 120.00140 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99767 * 180.02562 * 12 11 10 15 15 C 1.46926 * 120.62912 * 359.97438 * 14 12 11 16 16 C 1.53193 * 108.77347 * 233.58591 * 15 14 12 17 17 H 1.09005 * 109.50030 * 185.38261 * 16 15 14 18 18 O 1.42905 * 109.49827 * 65.31709 * 16 15 14 19 19 C 1.53040 * 109.31511 * 305.36538 * 16 15 14 20 20 C 1.53043 * 109.53764 * 61.36180 * 19 16 15 21 21 H 1.09006 * 109.49418 * 58.62027 * 20 19 16 22 22 C 1.50699 * 109.49987 * 178.68287 * 20 19 16 23 23 O 1.20824 * 119.99521 * 0.02562 * 22 20 19 24 24 O 1.34223 * 120.00125 * 180.02562 * 22 20 19 25 25 C 1.46924 * 120.62834 * 179.71756 * 14 12 11 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 33 33 H 1.09000 * 109.58936 * 353.37424 * 15 14 12 34 34 H 1.09003 * 109.58868 * 113.65730 * 15 14 12 35 35 H 0.96702 * 114.00115 * 59.99989 * 18 16 15 36 36 H 1.08999 * 109.46350 * 181.38712 * 19 16 15 37 37 H 1.08997 * 109.45908 * 301.34736 * 19 16 15 38 38 H 0.96697 * 117.00233 * 180.02562 * 24 22 20 39 39 H 1.09000 * 109.58442 * 246.20075 * 25 14 12 40 40 H 1.08998 * 109.58870 * 6.62695 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4594 -6.1326 0.0005 13 8 3.6517 -5.9110 0.0009 14 7 2.0101 -7.4033 -0.0004 15 6 0.5686 -7.6875 -0.0015 16 6 0.2507 -8.6282 1.1651 17 1 -0.7977 -8.9233 1.1193 18 8 0.5039 -7.9576 2.4013 19 6 1.1367 -9.8723 1.0681 20 6 2.6078 -9.4618 1.1656 21 1 2.7789 -8.9428 2.1088 22 6 3.4782 -10.6904 1.1025 23 8 2.9740 -11.7827 0.9904 24 8 4.8134 -10.5712 1.1707 25 6 2.9524 -8.5305 -0.0060 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8531 -5.0451 0.8897 32 1 0.8537 -5.0446 -0.8902 33 1 0.0126 -6.7575 0.1171 34 1 0.2903 -8.1621 -0.9425 35 1 -0.0226 -7.1566 2.5293 36 1 0.8953 -10.5546 1.8831 37 1 0.9611 -10.3697 0.1142 38 1 5.3299 -11.3875 1.1257 39 1 2.8655 -9.0747 -0.9464 40 1 3.9698 -8.1568 0.1096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = -194.217154 kcal Electronic energy + Delta-G solvation = -22888.520086 eV Core-core repulsion = 19281.567754 eV Total energy + Delta-G solvation = -3606.952333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.05575 -39.93301 -38.14227 -36.46254 -35.53366 -34.26045 -33.20103 -31.96019 -30.61514 -28.10914 -25.83194 -25.21278 -23.36065 -22.35250 -20.67930 -20.13922 -19.18081 -18.36722 -17.48298 -17.08597 -16.58890 -16.34366 -16.20960 -15.49617 -15.29617 -14.83231 -14.58132 -14.42626 -14.05563 -13.61662 -13.46961 -13.21049 -12.81889 -12.37687 -12.19333 -11.86989 -11.82002 -11.71286 -11.43470 -11.40484 -11.24288 -10.85764 -10.79658 -10.59470 -10.55839 -10.43996 -9.69433 -9.68325 -9.28802 -9.04866 -8.71908 -8.32849 -5.98991 -4.00301 1.83244 2.59152 2.83575 2.98553 3.36207 3.39621 3.43587 3.89124 4.21085 4.36791 4.45952 4.48570 4.55115 4.79182 4.91578 4.97179 5.21337 5.22139 5.30787 5.37245 5.38145 5.54536 5.62073 5.64049 5.71126 5.77211 6.16151 6.17123 6.34282 6.69707 6.90346 7.13518 7.34400 7.37241 7.56151 7.68700 7.81269 8.01477 8.33536 8.45673 9.06491 9.63789 11.12482 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.003134 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.547698 B = 8931.856188 C = 9487.126600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.135 4.135 12 C 0.519 3.481 13 O -0.532 6.532 14 N -0.614 5.614 15 C 0.071 3.929 16 C 0.092 3.908 17 H 0.076 0.924 18 O -0.560 6.560 19 C -0.096 4.096 20 C -0.092 4.092 21 H 0.124 0.876 22 C 0.489 3.511 23 O -0.517 6.517 24 O -0.511 6.511 25 C 0.124 3.876 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.383 0.617 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.410 0.590 39 H 0.069 0.931 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 -22.654 1.338 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.175 4.175 12 C 0.309 3.691 13 O -0.407 6.407 14 N -0.349 5.349 15 C -0.053 4.053 16 C 0.032 3.968 17 H 0.094 0.906 18 O -0.366 6.366 19 C -0.134 4.134 20 C -0.112 4.112 21 H 0.142 0.858 22 C 0.330 3.670 23 O -0.405 6.405 24 O -0.322 6.322 25 C 0.000 4.000 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.269 0.731 39 H 0.087 0.913 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.489 -22.809 1.392 22.857 hybrid contribution 0.235 0.687 -0.100 0.733 sum 0.724 -22.122 1.293 22.172 Atomic orbital electron populations 1.69950 1.06032 1.26666 1.51151 1.25012 0.94860 0.99241 0.95345 0.86649 0.79578 0.83037 0.78712 1.20229 1.21341 1.20203 1.21236 0.93183 0.91023 1.50271 0.92619 1.19115 0.93923 0.91446 0.97043 1.21469 0.98686 0.91455 1.01782 1.21865 0.98172 0.94080 1.03395 1.21284 0.90322 0.83179 0.74310 1.90680 1.17335 1.83961 1.48732 1.48020 1.06041 1.05606 1.75236 1.22573 0.81972 1.01468 0.99284 1.22177 0.98443 0.92027 0.84180 0.90635 1.86517 1.68711 1.43852 1.37560 1.21457 0.91317 0.96345 1.04261 1.21440 0.93673 0.92211 1.03875 0.85810 1.23366 0.81258 0.91000 0.71332 1.90716 1.74954 1.29204 1.45613 1.84588 1.19895 1.42885 1.84856 1.21453 0.96100 0.86887 0.95542 0.93012 0.96674 0.96625 0.92612 0.92686 0.89415 0.89427 0.88246 0.90243 0.76842 0.89901 0.89460 0.73107 0.91321 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.14 -2.12 4.05 -27.88 -0.11 -2.23 16 12 C 0.52 8.12 7.70 -10.98 -0.08 8.03 16 13 O -0.53 -10.46 15.39 5.56 0.09 -10.38 16 14 N -0.61 -7.14 2.91 -172.53 -0.50 -7.64 16 15 C 0.07 0.57 5.98 -3.71 -0.02 0.55 16 16 C 0.09 0.67 3.81 -26.61 -0.10 0.57 16 17 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 18 O -0.56 -5.03 12.51 -35.23 -0.44 -5.47 16 19 C -0.10 -0.80 4.21 -26.69 -0.11 -0.91 16 20 C -0.09 -0.89 2.65 -91.45 -0.24 -1.13 16 21 H 0.12 1.36 7.61 -51.93 -0.40 0.97 16 22 C 0.49 4.81 7.63 36.01 0.27 5.09 16 23 O -0.52 -6.19 16.74 -18.75 -0.31 -6.50 16 24 O -0.51 -4.17 13.36 -39.24 -0.52 -4.69 16 25 C 0.12 1.33 5.67 -3.51 -0.02 1.31 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 32 H 0.09 1.23 7.94 -51.93 -0.41 0.82 16 33 H 0.10 0.73 5.93 -51.93 -0.31 0.43 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.38 2.33 9.08 45.56 0.41 2.74 16 36 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.09 0.65 8.13 -51.93 -0.42 0.23 16 38 H 0.41 1.50 9.10 45.56 0.41 1.91 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.11 1.37 7.00 -51.93 -0.36 1.00 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -36.36 334.26 -6.42 -42.78 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.39 Total: 0.13 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.09 Total: -4.08 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.23 Total: -33.65 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.19 Total: -27.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.36 -6.42 -42.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.436 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds