Wall clock time and date at job start Tue Mar 31 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46735 * 180.02562 * 11 10 9 13 13 O 1.21273 * 120.00140 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99767 * 180.02562 * 12 11 10 15 15 C 1.46926 * 120.62912 * 359.97438 * 14 12 11 16 16 C 1.53193 * 108.77347 * 233.58591 * 15 14 12 17 17 H 1.09005 * 109.50030 * 185.38261 * 16 15 14 18 18 O 1.42905 * 109.49827 * 65.31709 * 16 15 14 19 19 C 1.53040 * 109.31511 * 305.36538 * 16 15 14 20 20 C 1.53043 * 109.53764 * 61.36180 * 19 16 15 21 21 H 1.09006 * 109.49418 * 58.62027 * 20 19 16 22 22 C 1.50699 * 109.49987 * 178.68287 * 20 19 16 23 23 O 1.20824 * 119.99521 * 0.02562 * 22 20 19 24 24 O 1.34223 * 120.00125 * 180.02562 * 22 20 19 25 25 C 1.46924 * 120.62834 * 179.71756 * 14 12 11 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 33 33 H 1.09000 * 109.58936 * 353.37424 * 15 14 12 34 34 H 1.09003 * 109.58868 * 113.65730 * 15 14 12 35 35 H 0.96702 * 114.00115 * 59.99989 * 18 16 15 36 36 H 1.08999 * 109.46350 * 181.38712 * 19 16 15 37 37 H 1.08997 * 109.45908 * 301.34736 * 19 16 15 38 38 H 0.96697 * 117.00233 * 180.02562 * 24 22 20 39 39 H 1.09000 * 109.58442 * 246.20075 * 25 14 12 40 40 H 1.08998 * 109.58870 * 6.62695 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4594 -6.1326 0.0005 13 8 3.6517 -5.9110 0.0009 14 7 2.0101 -7.4033 -0.0004 15 6 0.5686 -7.6875 -0.0015 16 6 0.2507 -8.6282 1.1651 17 1 -0.7977 -8.9233 1.1193 18 8 0.5039 -7.9576 2.4013 19 6 1.1367 -9.8723 1.0681 20 6 2.6078 -9.4618 1.1656 21 1 2.7789 -8.9428 2.1088 22 6 3.4782 -10.6904 1.1025 23 8 2.9740 -11.7827 0.9904 24 8 4.8134 -10.5712 1.1707 25 6 2.9524 -8.5305 -0.0060 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8531 -5.0451 0.8897 32 1 0.8537 -5.0446 -0.8902 33 1 0.0126 -6.7575 0.1171 34 1 0.2903 -8.1621 -0.9425 35 1 -0.0226 -7.1566 2.5293 36 1 0.8953 -10.5546 1.8831 37 1 0.9611 -10.3697 0.1142 38 1 5.3299 -11.3875 1.1257 39 1 2.8655 -9.0747 -0.9464 40 1 3.9698 -8.1568 0.1096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:34 Heat of formation + Delta-G solvation = -222.323302 kcal Electronic energy + Delta-G solvation = -22889.738860 eV Core-core repulsion = 19281.567754 eV Total energy + Delta-G solvation = -3608.171107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.88320 -40.90339 -39.05562 -37.20719 -36.42450 -36.03252 -34.34874 -33.67617 -31.35008 -29.80152 -26.85001 -26.31251 -24.91896 -23.06751 -22.19518 -21.14771 -20.18119 -19.14036 -18.66122 -18.19949 -17.82274 -17.40063 -17.25059 -16.57601 -16.53154 -16.26354 -15.66916 -15.25358 -15.14474 -14.72837 -14.47957 -14.18026 -14.06602 -13.89944 -13.72387 -13.07689 -12.94749 -12.61482 -12.60188 -12.49967 -12.41956 -12.39710 -12.18716 -11.90220 -11.67998 -11.53326 -11.42663 -11.22437 -11.09522 -10.68884 -10.51758 -9.64268 -8.18635 -6.27859 1.03815 1.41034 1.43301 1.51399 1.62740 1.82056 2.17292 2.43142 3.14581 3.29321 3.48556 3.69920 3.74841 3.79009 3.89586 4.14395 4.19947 4.27486 4.35479 4.47424 4.62765 4.65325 4.71895 4.75837 4.87669 4.98592 4.99037 5.10646 5.12568 5.21771 5.44910 5.53391 5.56579 5.78892 5.89155 6.27612 6.34706 6.87276 6.89444 6.93045 7.17674 7.40574 8.92468 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.003134 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.547698 B = 8931.856188 C = 9487.126600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.029 3.971 10 C -0.083 4.083 11 C -0.125 4.125 12 C 0.518 3.482 13 O -0.584 6.584 14 N -0.603 5.603 15 C 0.062 3.938 16 C 0.096 3.904 17 H 0.107 0.893 18 O -0.582 6.582 19 C -0.096 4.096 20 C -0.086 4.086 21 H 0.108 0.892 22 C 0.495 3.505 23 O -0.538 6.538 24 O -0.513 6.513 25 C 0.124 3.876 26 H 0.265 0.735 27 H 0.002 0.998 28 H 0.004 0.996 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.395 0.605 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.429 0.571 39 H 0.088 0.912 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -23.443 1.065 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.067 0.933 9 C -0.008 4.008 10 C -0.121 4.121 11 C -0.165 4.165 12 C 0.309 3.691 13 O -0.463 6.463 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.036 3.964 17 H 0.125 0.875 18 O -0.391 6.391 19 C -0.133 4.133 20 C -0.106 4.106 21 H 0.126 0.874 22 C 0.338 3.662 23 O -0.428 6.428 24 O -0.327 6.327 25 C 0.001 3.999 26 H 0.073 0.927 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.291 0.709 39 H 0.107 0.893 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.433 -23.641 1.123 23.672 hybrid contribution 0.522 0.871 -0.004 1.015 sum 0.089 -22.771 1.118 22.798 Atomic orbital electron populations 1.70045 1.07361 1.27806 1.51553 1.25852 0.95812 1.02862 0.94735 0.85608 0.78451 0.78662 0.78995 1.19556 1.20355 1.19536 1.21680 0.93306 0.92975 1.50760 0.93273 1.18992 0.94111 0.92073 0.95669 1.21175 0.97687 0.93183 1.00099 1.21694 0.97843 0.91244 1.05687 1.21164 0.89372 0.84449 0.74160 1.90663 1.19207 1.84913 1.51561 1.47984 1.07995 1.04415 1.73233 1.22955 0.79387 1.02589 1.01036 1.22271 0.99791 0.91135 0.83174 0.87503 1.86496 1.69478 1.44716 1.38405 1.21510 0.90152 0.96887 1.04769 1.21354 0.94984 0.91806 1.02475 0.87386 1.23314 0.81635 0.90572 0.70682 1.90709 1.75425 1.29875 1.46792 1.84559 1.19436 1.44423 1.84293 1.21474 0.94770 0.86696 0.96984 0.92664 0.97926 0.97763 0.94342 0.94376 0.86944 0.87226 0.87201 0.87620 0.75510 0.90419 0.88160 0.70872 0.89345 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.65 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.08 -3.56 4.44 30.59 0.14 -3.43 16 11 C -0.13 -3.77 4.05 29.85 0.12 -3.65 16 12 C 0.52 15.91 7.70 87.66 0.67 16.59 16 13 O -0.58 -23.51 15.39 -3.01 -0.05 -23.55 16 14 N -0.60 -13.04 2.91 -818.14 -2.38 -15.42 16 15 C 0.06 0.80 5.98 86.36 0.52 1.31 16 16 C 0.10 1.11 3.81 30.67 0.12 1.23 16 17 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 18 O -0.58 -9.27 12.51 -148.98 -1.86 -11.13 16 19 C -0.10 -1.36 4.21 30.62 0.13 -1.23 16 20 C -0.09 -1.57 2.65 -11.33 -0.03 -1.60 16 21 H 0.11 2.35 7.61 -2.38 -0.02 2.33 16 22 C 0.50 9.26 7.63 71.24 0.54 9.80 16 23 O -0.54 -12.21 16.74 21.97 0.37 -11.84 16 24 O -0.51 -7.94 13.36 -51.35 -0.69 -8.63 16 25 C 0.12 2.54 5.67 86.50 0.49 3.03 16 26 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.11 2.83 7.69 -2.39 -0.02 2.81 16 32 H 0.11 2.84 7.94 -2.39 -0.02 2.82 16 33 H 0.11 1.22 5.93 -2.39 -0.01 1.20 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.39 3.93 9.08 -74.06 -0.67 3.26 16 36 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 37 H 0.10 1.18 8.13 -2.39 -0.02 1.16 16 38 H 0.43 2.63 9.10 -74.06 -0.67 1.96 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 2.13 7.00 -2.39 -0.02 2.12 16 Total: -1.00 -79.49 334.26 0.96 -78.52 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -0.28 Total: 7.49 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 3.54 Total: -7.20 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -2.09 Total: -70.42 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -2.23 Total: -55.15 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -79.49 0.96 -78.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.802 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds