Wall clock time and date at job start Tue Mar 31 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00011 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00369 * 180.02562 * 12 11 10 15 15 C 1.46927 * 120.62757 * 359.71777 * 14 12 11 16 16 C 1.53632 * 108.54013 * 126.36982 * 15 14 12 17 17 H 1.09002 * 109.43099 * 174.72563 * 16 15 14 18 18 O 1.42898 * 109.65901 * 294.85005 * 16 15 14 19 19 C 1.53036 * 109.24130 * 54.85647 * 16 15 14 20 20 C 1.53041 * 109.53994 * 298.51106 * 19 16 15 21 21 H 1.08994 * 109.49924 * 301.41288 * 20 19 16 22 22 C 1.50697 * 109.52569 * 181.32977 * 20 19 16 23 23 O 1.20824 * 120.00109 * 0.15054 * 22 20 19 24 24 O 1.34226 * 120.00349 * 180.14427 * 22 20 19 25 25 C 1.46923 * 120.63207 * 180.02562 * 14 12 11 26 26 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09001 * 109.59036 * 246.19971 * 15 14 12 34 34 H 1.09001 * 109.58801 * 6.63134 * 15 14 12 35 35 H 0.96699 * 114.00391 * 299.85170 * 18 16 15 36 36 H 1.09001 * 109.46244 * 178.48880 * 19 16 15 37 37 H 1.09006 * 109.45170 * 58.52498 * 19 16 15 38 38 H 0.96700 * 117.00406 * 180.02562 * 24 22 20 39 39 H 1.08998 * 109.58421 * 353.36666 * 25 14 12 40 40 H 1.08995 * 109.58927 * 113.65523 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 6 6.0538 -4.0574 -0.0027 13 8 5.2657 -4.9793 -0.0026 14 7 7.3788 -4.3038 -0.0033 15 6 8.3458 -3.1976 -0.0097 16 6 9.3192 -3.3929 1.1628 17 1 10.0992 -2.6328 1.1171 18 8 8.6120 -3.2767 2.3991 19 6 9.9534 -4.7822 1.0658 20 6 8.8622 -5.8509 1.1629 21 1 8.3267 -5.7394 2.1057 22 6 9.4904 -7.2193 1.1001 23 8 10.6887 -7.3295 0.9917 24 8 8.7188 -8.3157 1.1647 25 6 7.8838 -5.6835 -0.0044 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6584 -3.1503 0.8892 30 1 3.6578 -3.1506 -0.8907 31 1 5.9141 -2.1231 -0.8927 32 1 5.9156 -2.1225 0.8872 33 1 8.8972 -3.1995 -0.9500 34 1 7.8185 -2.2506 0.1052 35 1 8.1837 -2.4194 2.5283 36 1 10.6648 -4.9145 1.8810 37 1 10.4722 -4.8786 0.1119 38 1 9.1671 -9.1713 1.1208 39 1 7.0514 -6.3773 0.1140 40 1 8.3960 -5.8845 -0.9453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:38 Heat of formation + Delta-G solvation = -190.107229 kcal Electronic energy + Delta-G solvation = -22949.889253 eV Core-core repulsion = 19343.115140 eV Total energy + Delta-G solvation = -3606.774113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.10073 -39.98419 -38.20075 -36.48947 -35.60894 -34.38193 -33.25516 -32.03112 -30.68025 -28.58681 -25.91370 -25.31890 -23.23835 -22.39952 -20.61096 -20.12258 -19.27825 -18.39931 -17.53435 -17.15543 -16.65377 -16.62457 -16.37585 -15.57308 -15.41443 -14.90594 -14.63210 -14.25345 -14.09054 -13.67330 -13.51227 -13.23662 -12.93857 -12.65495 -12.38131 -11.98747 -11.89798 -11.79120 -11.63017 -11.48024 -11.34737 -10.94475 -10.88698 -10.81153 -10.50222 -10.02102 -9.84469 -9.72031 -9.45738 -9.15206 -8.77897 -8.52522 -6.01843 -3.99782 1.80224 2.54758 2.76568 2.92918 3.29662 3.36724 3.38894 3.82993 4.16001 4.30037 4.40334 4.45324 4.49521 4.71340 4.85658 4.92220 5.14376 5.16650 5.23326 5.31206 5.33185 5.46390 5.50186 5.51652 5.66452 5.72423 6.01656 6.14169 6.26522 6.52943 6.66096 6.89067 7.26146 7.30179 7.36751 7.43031 7.53352 7.81080 8.26609 8.58047 9.05138 9.59945 11.11934 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030937 B = 0.003352 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.855374 B = 8350.356986 C = 8958.178387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.088 4.088 11 C -0.139 4.139 12 C 0.519 3.481 13 O -0.529 6.529 14 N -0.614 5.614 15 C 0.071 3.929 16 C 0.091 3.909 17 H 0.075 0.925 18 O -0.559 6.559 19 C -0.096 4.096 20 C -0.092 4.092 21 H 0.124 0.876 22 C 0.489 3.511 23 O -0.516 6.516 24 O -0.511 6.511 25 C 0.123 3.877 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.010 0.990 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.383 0.617 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.107 0.893 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.390 -8.862 1.356 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.178 4.178 12 C 0.309 3.691 13 O -0.403 6.403 14 N -0.349 5.349 15 C -0.053 4.053 16 C 0.031 3.969 17 H 0.093 0.907 18 O -0.365 6.365 19 C -0.134 4.134 20 C -0.112 4.112 21 H 0.142 0.858 22 C 0.331 3.669 23 O -0.405 6.405 24 O -0.322 6.322 25 C 0.000 4.000 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.231 0.769 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.112 -9.501 1.412 25.955 hybrid contribution 0.634 0.953 -0.119 1.151 sum 24.745 -8.548 1.293 26.212 Atomic orbital electron populations 1.69923 1.06322 1.26802 1.51282 1.25060 0.94743 0.99152 0.94714 0.86754 0.80281 0.83669 0.78374 1.20376 1.21452 1.19080 1.21163 0.89526 0.94559 1.50469 0.90924 1.19596 0.97362 0.92091 0.96018 1.21287 0.89080 0.99606 1.02646 1.21890 1.00783 0.91814 1.03346 1.21186 0.80669 0.92764 0.74512 1.90702 1.54416 1.46732 1.48496 1.48005 1.05944 1.05711 1.75241 1.22661 0.92140 0.91196 0.99285 1.22256 0.93124 0.97348 0.84132 0.90682 1.86526 1.71738 1.40731 1.37519 1.21459 0.96345 0.91297 1.04296 1.21363 0.98292 0.87630 1.03902 0.85802 1.23340 0.85201 0.87052 0.71348 1.90717 1.16519 1.87615 1.45616 1.84588 1.44876 1.17873 1.84861 1.21381 0.97717 0.85253 0.95645 0.92776 0.96695 0.97156 0.91974 0.92071 0.89440 0.89407 0.90179 0.88373 0.76942 0.89867 0.89440 0.73056 0.87465 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.09 -1.77 4.44 -26.73 -0.12 -1.89 16 11 C -0.14 -2.01 4.05 -27.89 -0.11 -2.12 16 12 C 0.52 7.76 7.70 -10.99 -0.08 7.67 16 13 O -0.53 -10.15 15.39 5.56 0.09 -10.06 16 14 N -0.61 -6.76 2.91 -172.48 -0.50 -7.26 16 15 C 0.07 0.52 6.03 -3.48 -0.02 0.50 16 16 C 0.09 0.62 3.81 -26.38 -0.10 0.51 16 17 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 18 O -0.56 -4.68 12.52 -35.23 -0.44 -5.12 16 19 C -0.10 -0.75 4.21 -26.69 -0.11 -0.87 16 20 C -0.09 -0.85 2.64 -91.63 -0.24 -1.09 16 21 H 0.12 1.31 7.61 -51.93 -0.40 0.92 16 22 C 0.49 4.67 7.63 36.00 0.27 4.95 16 23 O -0.52 -6.04 16.74 -18.75 -0.31 -6.36 16 24 O -0.51 -4.04 13.35 -39.25 -0.52 -4.57 16 25 C 0.12 1.28 5.64 -3.69 -0.02 1.25 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 28 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 29 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 30 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 31 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 32 H 0.09 1.07 7.70 -51.93 -0.40 0.67 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.63 5.93 -51.93 -0.31 0.32 16 35 H 0.38 2.04 9.09 45.56 0.41 2.45 16 36 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.09 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.41 1.42 9.10 45.56 0.41 1.83 16 39 H 0.11 1.33 7.00 -51.93 -0.36 0.97 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -37.25 330.68 -6.04 -43.29 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.35 Total: 0.81 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.08 Total: -5.03 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.27 Total: -34.64 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -1.19 Total: -26.11 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.25 -6.04 -43.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.815 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds