Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48492 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46867 * 300.00025 * 3 2 1 6 6 H 1.48500 * 109.47136 * 59.99324 * 3 2 1 7 7 C 1.37877 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47072 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99810 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99638 * 179.97438 * 12 11 10 15 15 C 1.46927 * 120.63516 * 359.97438 * 14 12 11 16 16 C 1.53192 * 108.77318 * 126.41107 * 15 14 12 17 17 H 1.09002 * 109.49733 * 294.68295 * 16 15 14 18 18 O 1.42901 * 109.49413 * 174.58742 * 16 15 14 19 19 C 1.53041 * 109.31320 * 54.63839 * 16 15 14 20 20 C 1.53033 * 109.53898 * 298.63305 * 19 16 15 21 21 H 1.09000 * 109.49457 * 301.41562 * 20 19 16 22 22 C 1.50701 * 109.50179 * 181.31603 * 20 19 16 23 23 O 1.20830 * 119.99656 * 0.16308 * 22 20 19 24 24 O 1.34221 * 120.00395 * 180.16222 * 22 20 19 25 25 C 1.46926 * 120.62904 * 180.02562 * 14 12 11 26 26 H 0.97002 * 120.00066 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47290 * 60.00005 * 9 7 2 28 28 H 1.09009 * 109.46835 * 300.00177 * 9 7 2 29 29 H 1.08997 * 109.47385 * 59.99595 * 10 9 7 30 30 H 1.09002 * 109.46581 * 300.00133 * 10 9 7 31 31 H 1.08998 * 109.46894 * 59.99785 * 11 10 9 32 32 H 1.09009 * 109.46754 * 299.99682 * 11 10 9 33 33 H 1.08997 * 109.58859 * 246.20187 * 15 14 12 34 34 H 1.09001 * 109.58530 * 6.48424 * 15 14 12 35 35 H 0.96703 * 114.00135 * 60.00453 * 18 16 15 36 36 H 1.09002 * 109.46121 * 58.65084 * 19 16 15 37 37 H 1.09004 * 109.46035 * 178.62071 * 19 16 15 38 38 H 0.96699 * 117.00143 * 179.97438 * 24 22 20 39 39 H 1.09006 * 109.58406 * 353.37631 * 25 14 12 40 40 H 1.09002 * 109.59019 * 113.79619 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4598 -6.1325 0.0037 13 8 3.6521 -5.9108 0.0040 14 7 2.0105 -7.4032 0.0047 15 6 0.5690 -7.6876 0.0060 16 6 0.2510 -8.6283 -1.1605 17 1 0.4440 -8.1166 -2.1035 18 8 -1.1231 -9.0157 -1.0998 19 6 1.1372 -9.8723 -1.0636 20 6 2.6082 -9.4617 -1.1614 21 1 2.7789 -8.9422 -2.1044 22 6 3.4787 -10.6902 -1.0984 23 8 2.9745 -11.7829 -0.9896 24 8 4.8140 -10.5707 -1.1631 25 6 2.9529 -8.5303 0.0057 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5562 0.8920 29 1 2.8721 -3.6035 0.8926 30 1 2.8720 -3.6050 -0.8873 31 1 0.8540 -5.0453 -0.8869 32 1 0.8535 -5.0443 0.8932 33 1 0.2915 -8.1644 0.9461 34 1 0.0129 -6.7573 -0.1100 35 1 -1.7432 -8.2756 -1.1533 36 1 0.9618 -10.3697 -0.1097 37 1 0.8958 -10.5545 -1.8787 38 1 5.3305 -11.3869 -1.1182 39 1 3.9699 -8.1564 -0.1131 40 1 2.8694 -9.0757 0.9457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = -195.046293 kcal Electronic energy + Delta-G solvation = -22658.022427 eV Core-core repulsion = 19051.034140 eV Total energy + Delta-G solvation = -3606.988287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12268 -39.99061 -38.20576 -36.54387 -35.96058 -34.30832 -33.30318 -31.99808 -30.43638 -28.13940 -25.88113 -25.26292 -23.39659 -22.37438 -20.82267 -20.20153 -19.06785 -18.43419 -17.82887 -17.11448 -16.74200 -16.37837 -16.26275 -15.83456 -15.41956 -14.83798 -14.45934 -14.34291 -13.98343 -13.80227 -13.62318 -13.01310 -12.87608 -12.71296 -12.26336 -11.92708 -11.91343 -11.69439 -11.55141 -11.40444 -11.15986 -10.95547 -10.85568 -10.62010 -10.57823 -10.53404 -9.75039 -9.72982 -9.32508 -9.05202 -8.85899 -8.35355 -6.00874 -4.02224 1.74705 2.41929 2.72883 2.90116 3.31801 3.39367 3.44977 3.73367 4.27658 4.29822 4.40829 4.46519 4.49465 4.70200 4.77045 4.93754 5.05252 5.21224 5.31913 5.35551 5.38845 5.50251 5.57491 5.60544 5.66253 5.77338 6.09698 6.11954 6.24178 6.66018 6.86656 7.10124 7.21893 7.28367 7.48631 7.66863 7.78759 7.99516 8.23250 8.43458 9.05026 9.62121 11.10635 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.003119 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.455702 B = 8973.945578 C = 9822.333021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.137 4.137 12 C 0.518 3.482 13 O -0.528 6.528 14 N -0.619 5.619 15 C 0.073 3.927 16 C 0.094 3.906 17 H 0.066 0.934 18 O -0.560 6.560 19 C -0.099 4.099 20 C -0.093 4.093 21 H 0.118 0.882 22 C 0.491 3.509 23 O -0.511 6.511 24 O -0.510 6.510 25 C 0.120 3.880 26 H 0.259 0.741 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.386 0.614 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.110 0.890 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 -21.924 -2.184 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.177 4.177 12 C 0.308 3.692 13 O -0.403 6.403 14 N -0.355 5.355 15 C -0.051 4.051 16 C 0.034 3.966 17 H 0.084 0.916 18 O -0.365 6.365 19 C -0.137 4.137 20 C -0.114 4.114 21 H 0.136 0.864 22 C 0.332 3.668 23 O -0.398 6.398 24 O -0.322 6.322 25 C -0.003 4.003 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.234 0.766 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.689 -22.193 -2.121 22.358 hybrid contribution 0.390 0.834 -0.049 0.922 sum 2.079 -21.358 -2.170 21.569 Atomic orbital electron populations 1.69966 1.06037 1.26471 1.51256 1.25018 0.94859 0.99279 0.95354 0.86540 0.80250 0.83735 0.77536 1.19664 1.21039 1.21030 1.21304 0.93244 0.90973 1.50084 0.92503 1.19132 0.93939 0.91470 0.97103 1.21477 0.98698 0.91413 1.01816 1.21897 0.98178 0.93993 1.03624 1.21360 0.90399 0.83112 0.74312 1.90689 1.17266 1.83903 1.48458 1.48100 1.06102 1.05721 1.75620 1.22559 0.81584 1.01151 0.99792 1.22033 0.82405 0.94595 0.97536 0.91580 1.86512 1.15203 1.37845 1.96926 1.21328 0.89935 0.97152 1.05237 1.21351 0.93759 0.92665 1.03581 0.86441 1.23071 0.81302 0.90709 0.71691 1.90746 1.74932 1.29005 1.45135 1.84566 1.19699 1.43025 1.84899 1.21442 0.96113 0.86868 0.95893 0.93103 0.96615 0.96605 0.92595 0.92617 0.89313 0.89200 0.90258 0.88279 0.76629 0.89854 0.89745 0.72861 0.87181 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -1.99 4.44 -26.73 -0.12 -2.10 16 11 C -0.14 -2.11 4.05 -27.88 -0.11 -2.22 16 12 C 0.52 7.79 7.70 -10.99 -0.08 7.71 16 13 O -0.53 -9.95 15.39 5.56 0.09 -9.86 16 14 N -0.62 -6.92 2.97 -172.74 -0.51 -7.44 16 15 C 0.07 0.62 5.97 -3.71 -0.02 0.60 16 16 C 0.09 0.76 3.62 -26.61 -0.10 0.66 16 17 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 18 O -0.56 -4.49 13.32 -35.23 -0.47 -4.96 16 19 C -0.10 -0.86 4.11 -26.69 -0.11 -0.97 16 20 C -0.09 -0.81 2.78 -91.63 -0.25 -1.06 16 21 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 22 C 0.49 4.46 7.63 36.01 0.27 4.74 16 23 O -0.51 -5.97 16.74 -18.75 -0.31 -6.29 16 24 O -0.51 -3.68 13.35 -39.23 -0.52 -4.21 16 25 C 0.12 1.21 5.65 -3.69 -0.02 1.19 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.09 1.20 7.70 -51.93 -0.40 0.80 16 32 H 0.09 1.25 7.94 -51.92 -0.41 0.84 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.76 5.93 -51.93 -0.31 0.45 16 35 H 0.39 1.59 9.08 45.56 0.41 2.01 16 36 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 37 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.41 1.19 9.10 45.56 0.41 1.60 16 39 H 0.11 1.28 7.01 -51.93 -0.36 0.92 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -35.97 335.46 -6.47 -42.45 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.41 Total: -0.95 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.09 Total: -4.61 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.22 Total: -33.31 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -1.22 Total: -25.31 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.97 -6.47 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.601 kcal (2) G-P(sol) polarization free energy of solvation -35.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds