Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48492 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46867 * 300.00025 * 3 2 1 6 6 H 1.48500 * 109.47136 * 59.99324 * 3 2 1 7 7 C 1.37877 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47072 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99810 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99638 * 179.97438 * 12 11 10 15 15 C 1.46927 * 120.63516 * 359.97438 * 14 12 11 16 16 C 1.53192 * 108.77318 * 126.41107 * 15 14 12 17 17 H 1.09002 * 109.49733 * 294.68295 * 16 15 14 18 18 O 1.42901 * 109.49413 * 174.58742 * 16 15 14 19 19 C 1.53041 * 109.31320 * 54.63839 * 16 15 14 20 20 C 1.53033 * 109.53898 * 298.63305 * 19 16 15 21 21 H 1.09000 * 109.49457 * 301.41562 * 20 19 16 22 22 C 1.50701 * 109.50179 * 181.31603 * 20 19 16 23 23 O 1.20830 * 119.99656 * 0.16308 * 22 20 19 24 24 O 1.34221 * 120.00395 * 180.16222 * 22 20 19 25 25 C 1.46926 * 120.62904 * 180.02562 * 14 12 11 26 26 H 0.97002 * 120.00066 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47290 * 60.00005 * 9 7 2 28 28 H 1.09009 * 109.46835 * 300.00177 * 9 7 2 29 29 H 1.08997 * 109.47385 * 59.99595 * 10 9 7 30 30 H 1.09002 * 109.46581 * 300.00133 * 10 9 7 31 31 H 1.08998 * 109.46894 * 59.99785 * 11 10 9 32 32 H 1.09009 * 109.46754 * 299.99682 * 11 10 9 33 33 H 1.08997 * 109.58859 * 246.20187 * 15 14 12 34 34 H 1.09001 * 109.58530 * 6.48424 * 15 14 12 35 35 H 0.96703 * 114.00135 * 60.00453 * 18 16 15 36 36 H 1.09002 * 109.46121 * 58.65084 * 19 16 15 37 37 H 1.09004 * 109.46035 * 178.62071 * 19 16 15 38 38 H 0.96699 * 117.00143 * 179.97438 * 24 22 20 39 39 H 1.09006 * 109.58406 * 353.37631 * 25 14 12 40 40 H 1.09002 * 109.59019 * 113.79619 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4598 -6.1325 0.0037 13 8 3.6521 -5.9108 0.0040 14 7 2.0105 -7.4032 0.0047 15 6 0.5690 -7.6876 0.0060 16 6 0.2510 -8.6283 -1.1605 17 1 0.4440 -8.1166 -2.1035 18 8 -1.1231 -9.0157 -1.0998 19 6 1.1372 -9.8723 -1.0636 20 6 2.6082 -9.4617 -1.1614 21 1 2.7789 -8.9422 -2.1044 22 6 3.4787 -10.6902 -1.0984 23 8 2.9745 -11.7829 -0.9896 24 8 4.8140 -10.5707 -1.1631 25 6 2.9529 -8.5303 0.0057 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5562 0.8920 29 1 2.8721 -3.6035 0.8926 30 1 2.8720 -3.6050 -0.8873 31 1 0.8540 -5.0453 -0.8869 32 1 0.8535 -5.0443 0.8932 33 1 0.2915 -8.1644 0.9461 34 1 0.0129 -6.7573 -0.1100 35 1 -1.7432 -8.2756 -1.1533 36 1 0.9618 -10.3697 -0.1097 37 1 0.8958 -10.5545 -1.8787 38 1 5.3305 -11.3869 -1.1182 39 1 3.9699 -8.1564 -0.1131 40 1 2.8694 -9.0757 0.9457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -222.668054 kcal Electronic energy + Delta-G solvation = -22659.220196 eV Core-core repulsion = 19051.034140 eV Total energy + Delta-G solvation = -3608.186056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92038 -40.93750 -39.07755 -37.22094 -36.77809 -36.09776 -34.40269 -33.73148 -31.19591 -29.80354 -26.88784 -26.35662 -24.93268 -23.07663 -22.21711 -21.28866 -20.09721 -19.14963 -18.63871 -18.42000 -17.95437 -17.45295 -17.18480 -16.87272 -16.57386 -16.40508 -15.67681 -15.21878 -15.02757 -14.87137 -14.45949 -14.21579 -14.07590 -13.72459 -13.66022 -13.41972 -13.09855 -12.63974 -12.61350 -12.51041 -12.47342 -12.38696 -12.21292 -11.85497 -11.74014 -11.53913 -11.43274 -11.23134 -11.18407 -10.73623 -10.52597 -9.78150 -8.18929 -6.28044 1.01505 1.40296 1.41373 1.54435 1.56109 1.68609 2.10864 2.42963 3.09345 3.14515 3.53357 3.63841 3.66317 3.72269 3.84445 4.07651 4.17553 4.26339 4.28570 4.39440 4.49922 4.59764 4.67450 4.72771 4.81118 4.97810 4.98686 5.10859 5.11177 5.21483 5.35506 5.52710 5.56877 5.78577 5.89143 6.21133 6.31516 6.85803 6.87756 6.91175 7.10466 7.40649 8.92564 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.027325 B = 0.003119 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.455702 B = 8973.945578 C = 9822.333021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.083 4.083 11 C -0.129 4.129 12 C 0.521 3.479 13 O -0.574 6.574 14 N -0.607 5.607 15 C 0.070 3.930 16 C 0.102 3.898 17 H 0.072 0.928 18 O -0.571 6.571 19 C -0.096 4.096 20 C -0.086 4.086 21 H 0.125 0.875 22 C 0.499 3.501 23 O -0.539 6.539 24 O -0.509 6.509 25 C 0.121 3.879 26 H 0.264 0.736 27 H 0.004 0.996 28 H 0.002 0.998 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.402 0.598 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.431 0.569 39 H 0.094 0.906 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -22.346 -2.351 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.168 4.168 12 C 0.311 3.689 13 O -0.453 6.453 14 N -0.342 5.342 15 C -0.053 4.053 16 C 0.042 3.958 17 H 0.090 0.910 18 O -0.379 6.379 19 C -0.134 4.134 20 C -0.106 4.106 21 H 0.143 0.857 22 C 0.341 3.659 23 O -0.429 6.429 24 O -0.323 6.323 25 C -0.002 4.002 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.293 0.707 39 H 0.112 0.888 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.360 -22.650 -2.290 22.806 hybrid contribution 0.472 0.910 0.007 1.025 sum 1.831 -21.740 -2.283 21.936 Atomic orbital electron populations 1.70058 1.07389 1.27662 1.51735 1.25861 0.95800 1.02914 0.94798 0.85494 0.78952 0.79251 0.77943 1.19276 1.20148 1.20200 1.21731 0.93334 0.92884 1.50452 0.93158 1.19016 0.94177 0.92203 0.95658 1.21182 0.97676 0.92959 1.00353 1.21730 0.97931 0.91376 1.05779 1.21146 0.89439 0.84167 0.74114 1.90678 1.18906 1.84737 1.51002 1.48000 1.07612 1.04739 1.73826 1.22785 0.79696 1.02107 1.00710 1.21904 0.82527 0.93907 0.97436 0.90986 1.86489 1.15326 1.39196 1.96890 1.21292 0.89987 0.97437 1.04686 1.21264 0.93860 0.92254 1.03225 0.85726 1.23037 0.81746 0.90225 0.70853 1.90742 1.75520 1.29977 1.46621 1.84534 1.19033 1.44497 1.84256 1.21476 0.95073 0.86556 0.97137 0.92701 0.97803 0.97988 0.94186 0.93990 0.86927 0.87255 0.89171 0.86997 0.74656 0.90492 0.90221 0.70658 0.88770 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 2 C 0.00 0.24 5.46 84.65 0.46 0.71 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.08 -3.48 4.44 30.60 0.14 -3.34 16 11 C -0.13 -3.77 4.05 29.85 0.12 -3.65 16 12 C 0.52 15.12 7.70 87.66 0.67 15.79 16 13 O -0.57 -21.68 15.39 -3.02 -0.05 -21.73 16 14 N -0.61 -12.51 2.97 -818.81 -2.43 -14.95 16 15 C 0.07 0.99 5.97 86.36 0.52 1.51 16 16 C 0.10 1.40 3.62 30.67 0.11 1.51 16 17 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 18 O -0.57 -7.73 13.32 -148.98 -1.98 -9.72 16 19 C -0.10 -1.52 4.11 30.62 0.13 -1.39 16 20 C -0.09 -1.36 2.78 -11.45 -0.03 -1.39 16 21 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 22 C 0.50 8.46 7.63 71.24 0.54 9.01 16 23 O -0.54 -12.09 16.74 21.95 0.37 -11.72 16 24 O -0.51 -6.65 13.35 -51.33 -0.69 -7.34 16 25 C 0.12 2.26 5.65 86.38 0.49 2.75 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 29 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 30 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 31 H 0.11 2.77 7.70 -2.39 -0.02 2.76 16 32 H 0.11 2.80 7.94 -2.38 -0.02 2.78 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.35 5.93 -2.39 -0.01 1.33 16 35 H 0.40 2.22 9.08 -74.06 -0.67 1.54 16 36 H 0.08 1.32 8.13 -2.39 -0.02 1.31 16 37 H 0.08 1.36 8.07 -2.38 -0.02 1.34 16 38 H 0.43 1.82 9.10 -74.06 -0.67 1.15 16 39 H 0.09 2.14 7.01 -2.38 -0.02 2.12 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -77.37 335.46 0.77 -76.59 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -0.28 Total: 5.32 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 3.53 Total: -8.13 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -2.15 Total: -69.73 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -2.35 Total: -50.50 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -77.37 0.77 -76.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.073 kcal (2) G-P(sol) polarization free energy of solvation -77.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds