Wall clock time and date at job start Tue Mar 31 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46924 * 120.63274 * 179.97438 * 14 12 11 16 16 C 1.53194 * 108.77871 * 126.36762 * 15 14 12 17 17 H 1.09004 * 109.49602 * 294.65422 * 16 15 14 18 18 C 1.50697 * 109.49855 * 174.58720 * 16 15 14 19 19 O 1.20828 * 119.99851 * 240.00128 * 18 16 15 20 20 O 1.34226 * 120.00012 * 59.99969 * 18 16 15 21 21 C 1.53046 * 109.30895 * 54.63246 * 16 15 14 22 22 C 1.53038 * 109.54065 * 298.63525 * 21 16 15 23 23 H 1.08993 * 109.49577 * 301.38312 * 22 21 16 24 24 O 1.42900 * 109.49319 * 181.31619 * 22 21 16 25 25 C 1.46935 * 120.63062 * 359.71975 * 14 12 11 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 32 32 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 33 33 H 1.08999 * 109.58779 * 246.15227 * 15 14 12 34 34 H 1.09001 * 109.58663 * 6.43692 * 15 14 12 35 35 H 0.96700 * 116.99640 * 180.02562 * 20 18 16 36 36 H 1.09000 * 109.45684 * 58.65998 * 21 16 15 37 37 H 1.09001 * 109.45513 * 178.62330 * 21 16 15 38 38 H 0.96703 * 113.99522 * 179.97438 * 24 22 21 39 39 H 1.09000 * 109.58572 * 353.41668 * 25 14 12 40 40 H 1.08992 * 109.58559 * 113.84498 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 6 6.0538 -4.0574 0.0221 13 8 5.2657 -4.9792 0.0202 14 7 7.3788 -4.3037 0.0280 15 6 7.8838 -5.6835 0.0328 16 6 8.8657 -5.8533 -1.1307 17 1 8.3328 -5.7442 -2.0753 18 6 9.4943 -7.2212 -1.0629 19 8 10.6924 -7.3306 -0.9507 20 8 8.7232 -8.3180 -1.1270 21 6 9.9565 -4.7843 -1.0325 22 6 9.3226 -3.3951 -1.1343 23 1 8.7860 -3.3085 -2.0791 24 8 10.3450 -2.3987 -1.0732 25 6 8.3459 -3.1975 0.0242 26 1 -0.4849 0.8400 0.0004 27 1 3.8786 -0.6821 -0.8838 28 1 3.8711 -0.6785 0.8962 29 1 3.6545 -3.1486 0.9003 30 1 3.6618 -3.1522 -0.8796 31 1 5.9188 -2.1245 -0.8715 32 1 5.9108 -2.1211 0.9084 33 1 8.3954 -5.8821 0.9746 34 1 7.0516 -6.3776 -0.0843 35 1 9.1718 -9.1734 -1.0791 36 1 10.4726 -4.8789 -0.0770 37 1 10.6702 -4.9181 -1.8454 38 1 10.0144 -1.4919 -1.1325 39 1 7.8188 -2.2518 -0.1013 40 1 8.8958 -3.1897 0.9652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:42 Heat of formation + Delta-G solvation = -190.821421 kcal Electronic energy + Delta-G solvation = -22720.746051 eV Core-core repulsion = 19113.940969 eV Total energy + Delta-G solvation = -3606.805083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.17006 -40.05066 -38.28458 -36.57303 -36.02849 -34.43210 -33.35099 -32.06306 -30.52983 -28.61595 -25.97240 -25.37386 -23.27505 -22.42005 -20.77896 -20.15785 -19.16708 -18.46707 -17.88888 -17.16734 -16.83518 -16.65146 -16.36313 -15.97653 -15.52226 -14.90090 -14.41447 -14.31031 -14.04424 -13.84606 -13.62605 -13.06998 -13.00440 -12.74521 -12.65079 -12.06084 -11.94821 -11.79497 -11.70009 -11.56274 -11.22866 -10.99768 -10.97256 -10.83183 -10.64636 -10.05714 -9.88238 -9.74318 -9.51327 -9.17456 -8.92253 -8.53988 -6.03420 -4.01510 1.71666 2.37572 2.65877 2.84139 3.28637 3.36033 3.38119 3.67328 4.21824 4.25111 4.35304 4.43694 4.44079 4.62692 4.69904 4.86692 5.01533 5.13892 5.26819 5.29602 5.32015 5.42543 5.45177 5.48676 5.60709 5.72359 5.97872 6.07146 6.15605 6.49491 6.62592 6.86385 7.13999 7.20879 7.33160 7.40601 7.45922 7.79266 8.16191 8.56094 9.03323 9.58339 11.10301 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.003348 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.169018 B = 8361.980348 C = 9265.846818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.518 3.482 13 O -0.525 6.525 14 N -0.618 5.618 15 C 0.120 3.880 16 C -0.093 4.093 17 H 0.118 0.882 18 C 0.491 3.509 19 O -0.510 6.510 20 O -0.510 6.510 21 C -0.099 4.099 22 C 0.094 3.906 23 H 0.066 0.934 24 O -0.559 6.559 25 C 0.073 3.927 26 H 0.263 0.737 27 H 0.010 0.990 28 H 0.015 0.985 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.413 0.587 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.385 0.615 39 H 0.097 0.903 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.069 -9.647 -2.094 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.051 4.051 10 C -0.126 4.126 11 C -0.180 4.180 12 C 0.308 3.692 13 O -0.399 6.399 14 N -0.355 5.355 15 C -0.003 4.003 16 C -0.114 4.114 17 H 0.136 0.864 18 C 0.332 3.668 19 O -0.398 6.398 20 O -0.322 6.322 21 C -0.137 4.137 22 C 0.034 3.966 23 H 0.084 0.916 24 O -0.364 6.364 25 C -0.051 4.051 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.272 0.728 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.233 0.767 39 H 0.116 0.884 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.970 -10.194 -2.022 25.211 hybrid contribution 0.422 0.864 -0.073 0.964 sum 23.392 -9.330 -2.095 25.271 Atomic orbital electron populations 1.69920 1.06325 1.26833 1.51214 1.25060 0.94743 0.99163 0.94682 0.86759 0.80305 0.83657 0.78395 1.20347 1.21433 1.19062 1.21157 0.89495 0.94564 1.50570 0.90918 1.19599 0.97384 0.92047 0.96070 1.21295 0.88974 0.99697 1.02674 1.21921 1.00855 0.91654 1.03577 1.21261 0.80545 0.92893 0.74507 1.90709 1.54297 1.46719 1.48220 1.48083 1.06032 1.05772 1.75630 1.21436 0.97701 0.85207 0.95974 1.21338 0.97998 0.88430 1.03587 0.86431 1.23052 0.85158 0.86842 0.71722 1.90747 1.16427 1.87523 1.45107 1.84567 1.44855 1.17879 1.84860 1.21330 0.96530 0.90531 1.05277 1.21958 0.88255 0.88830 0.97568 0.91607 1.86525 1.34575 1.18442 1.96868 1.22474 0.91572 0.91100 0.99929 0.92755 0.97128 0.96665 0.91966 0.91996 0.89326 0.89191 0.90917 0.87102 0.72818 0.89827 0.89710 0.76719 0.88434 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.09 -1.75 4.44 -26.74 -0.12 -1.86 16 11 C -0.14 -2.00 4.05 -27.88 -0.11 -2.11 16 12 C 0.52 7.43 7.70 -10.98 -0.08 7.35 16 13 O -0.52 -9.63 15.39 5.56 0.09 -9.55 16 14 N -0.62 -6.54 2.98 -173.00 -0.52 -7.05 16 15 C 0.12 1.15 5.65 -3.71 -0.02 1.13 16 16 C -0.09 -0.77 2.78 -91.65 -0.25 -1.02 16 17 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 18 C 0.49 4.32 7.63 36.00 0.27 4.60 16 19 O -0.51 -5.83 16.74 -18.75 -0.31 -6.15 16 20 O -0.51 -3.57 13.35 -39.25 -0.52 -4.09 16 21 C -0.10 -0.82 4.11 -26.69 -0.11 -0.93 16 22 C 0.09 0.70 3.61 -26.81 -0.10 0.60 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 O -0.56 -4.14 13.32 -35.23 -0.47 -4.61 16 25 C 0.07 0.57 5.94 -3.91 -0.02 0.54 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.01 0.23 7.58 -51.93 -0.39 -0.16 16 28 H 0.02 0.34 7.19 -51.93 -0.37 -0.03 16 29 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 30 H 0.06 1.30 8.10 -51.93 -0.42 0.87 16 31 H 0.09 1.07 7.68 -51.93 -0.40 0.67 16 32 H 0.09 1.12 7.95 -51.93 -0.41 0.71 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.25 7.00 -51.93 -0.36 0.88 16 35 H 0.41 1.11 9.10 45.56 0.41 1.52 16 36 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 37 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.38 1.32 9.08 45.56 0.41 1.73 16 39 H 0.10 0.65 5.93 -51.93 -0.31 0.34 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -36.80 331.83 -6.10 -42.90 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.38 Total: -0.26 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.09 Total: -5.57 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.26 Total: -34.29 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.22 Total: -24.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.80 -6.10 -42.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.917 kcal (2) G-P(sol) polarization free energy of solvation -36.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds