Wall clock time and date at job start Tue Mar 31 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46924 * 120.63274 * 179.97438 * 14 12 11 16 16 C 1.53194 * 108.77871 * 126.36762 * 15 14 12 17 17 H 1.09004 * 109.49602 * 294.65422 * 16 15 14 18 18 C 1.50697 * 109.49855 * 174.58720 * 16 15 14 19 19 O 1.20828 * 119.99851 * 240.00128 * 18 16 15 20 20 O 1.34226 * 120.00012 * 59.99969 * 18 16 15 21 21 C 1.53046 * 109.30895 * 54.63246 * 16 15 14 22 22 C 1.53038 * 109.54065 * 298.63525 * 21 16 15 23 23 H 1.08993 * 109.49577 * 301.38312 * 22 21 16 24 24 O 1.42900 * 109.49319 * 181.31619 * 22 21 16 25 25 C 1.46935 * 120.63062 * 359.71975 * 14 12 11 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 32 32 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 33 33 H 1.08999 * 109.58779 * 246.15227 * 15 14 12 34 34 H 1.09001 * 109.58663 * 6.43692 * 15 14 12 35 35 H 0.96700 * 116.99640 * 180.02562 * 20 18 16 36 36 H 1.09000 * 109.45684 * 58.65998 * 21 16 15 37 37 H 1.09001 * 109.45513 * 178.62330 * 21 16 15 38 38 H 0.96703 * 113.99522 * 179.97438 * 24 22 21 39 39 H 1.09000 * 109.58572 * 353.41668 * 25 14 12 40 40 H 1.08992 * 109.58559 * 113.84498 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 6 6.0538 -4.0574 0.0221 13 8 5.2657 -4.9792 0.0202 14 7 7.3788 -4.3037 0.0280 15 6 7.8838 -5.6835 0.0328 16 6 8.8657 -5.8533 -1.1307 17 1 8.3328 -5.7442 -2.0753 18 6 9.4943 -7.2212 -1.0629 19 8 10.6924 -7.3306 -0.9507 20 8 8.7232 -8.3180 -1.1270 21 6 9.9565 -4.7843 -1.0325 22 6 9.3226 -3.3951 -1.1343 23 1 8.7860 -3.3085 -2.0791 24 8 10.3450 -2.3987 -1.0732 25 6 8.3459 -3.1975 0.0242 26 1 -0.4849 0.8400 0.0004 27 1 3.8786 -0.6821 -0.8838 28 1 3.8711 -0.6785 0.8962 29 1 3.6545 -3.1486 0.9003 30 1 3.6618 -3.1522 -0.8796 31 1 5.9188 -2.1245 -0.8715 32 1 5.9108 -2.1211 0.9084 33 1 8.3954 -5.8821 0.9746 34 1 7.0516 -6.3776 -0.0843 35 1 9.1718 -9.1734 -1.0791 36 1 10.4726 -4.8789 -0.0770 37 1 10.6702 -4.9181 -1.8454 38 1 10.0144 -1.4919 -1.1325 39 1 7.8188 -2.2518 -0.1013 40 1 8.8958 -3.1897 0.9652 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:42 Heat of formation + Delta-G solvation = -220.633079 kcal Electronic energy + Delta-G solvation = -22722.038782 eV Core-core repulsion = 19113.940969 eV Total energy + Delta-G solvation = -3608.097813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.92588 -40.94193 -39.08852 -37.22932 -36.78147 -36.10946 -34.41492 -33.83677 -31.23492 -30.20046 -26.91980 -26.34749 -24.72584 -23.06661 -22.05970 -21.30249 -20.11951 -19.16450 -18.83993 -18.55121 -18.00295 -17.46536 -17.18648 -16.89067 -16.57667 -16.19690 -15.66980 -15.26725 -15.00642 -14.89283 -14.65036 -14.37653 -14.11086 -13.79205 -13.65808 -13.42522 -13.19786 -12.67180 -12.62190 -12.48057 -12.41742 -12.30068 -11.88569 -11.75867 -11.74404 -11.64290 -11.46406 -11.27973 -11.21017 -10.76377 -10.72374 -9.77782 -8.25161 -6.30873 1.00874 1.41048 1.44939 1.56686 1.57269 1.69012 2.10960 2.41722 3.09668 3.10324 3.53185 3.64283 3.65964 3.74210 3.84684 4.08086 4.12274 4.25751 4.29625 4.38952 4.49478 4.59770 4.67215 4.73344 4.80017 4.93255 4.97176 4.99025 5.06930 5.11489 5.34507 5.52076 5.59534 5.63651 5.70807 6.23624 6.34284 6.78562 6.88074 6.90589 7.11985 7.33624 8.92631 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.003348 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.169018 B = 8361.980348 C = 9265.846818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.005 4.005 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.232 1.232 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.518 3.482 13 O -0.578 6.578 14 N -0.607 5.607 15 C 0.120 3.880 16 C -0.086 4.086 17 H 0.125 0.875 18 C 0.498 3.502 19 O -0.539 6.539 20 O -0.510 6.510 21 C -0.097 4.097 22 C 0.102 3.898 23 H 0.073 0.927 24 O -0.571 6.571 25 C 0.069 3.931 26 H 0.266 0.734 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.431 0.569 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.403 0.597 39 H 0.118 0.882 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.243 -7.618 -2.247 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.201 4.201 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.155 1.155 7 C -0.578 4.578 8 H 0.036 0.964 9 C -0.046 4.046 10 C -0.120 4.120 11 C -0.169 4.169 12 C 0.308 3.692 13 O -0.457 6.457 14 N -0.342 5.342 15 C -0.003 4.003 16 C -0.106 4.106 17 H 0.142 0.858 18 C 0.340 3.660 19 O -0.429 6.429 20 O -0.324 6.324 21 C -0.135 4.135 22 C 0.042 3.958 23 H 0.091 0.909 24 O -0.379 6.379 25 C -0.053 4.053 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.293 0.707 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.254 0.746 39 H 0.136 0.864 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 26.201 -8.180 -2.178 27.535 hybrid contribution -0.621 0.098 -0.023 0.630 sum 25.579 -8.083 -2.201 26.916 Atomic orbital electron populations 1.70115 1.08806 1.28258 1.52830 1.26231 0.95727 1.04237 0.93908 0.85489 0.79771 0.76908 0.79398 1.18856 1.21576 1.15454 1.21589 0.92885 0.92753 1.50552 0.96350 1.19543 0.93283 0.94317 0.97443 1.21061 0.93434 0.97176 1.00343 1.21784 0.96270 0.92301 1.06574 1.21252 0.81414 0.92387 0.74126 1.90702 1.55963 1.48019 1.51010 1.48006 1.05293 1.07033 1.73829 1.21440 0.97303 0.84416 0.97135 1.21258 0.97660 0.88430 1.03220 0.85762 1.23078 0.84675 0.87350 0.70862 1.90740 1.17569 1.87954 1.46605 1.84540 1.44912 1.18703 1.84242 1.21299 0.96283 0.91278 1.04629 1.21820 0.88012 0.88321 0.97646 0.90900 1.86504 1.34828 1.19715 1.96845 1.22730 0.91176 0.90681 1.00711 0.92578 0.94996 0.95042 0.94630 0.94401 0.85952 0.86335 0.89838 0.89013 0.70676 0.90546 0.90317 0.74606 0.86396 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.28 13.96 21.45 0.30 -60.98 16 2 C -0.01 -0.32 5.47 84.66 0.46 0.15 16 3 Si 0.96 42.56 27.47 68.60 1.88 44.44 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.23 -8.93 6.54 99.48 0.65 -8.28 16 7 C -0.54 -31.67 9.66 25.60 0.25 -31.42 16 8 H 0.02 1.22 7.99 -2.91 -0.02 1.19 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.08 -3.21 4.44 30.59 0.14 -3.07 16 11 C -0.13 -3.28 4.05 29.85 0.12 -3.16 16 12 C 0.52 14.03 7.70 87.66 0.67 14.71 16 13 O -0.58 -21.52 15.39 -3.02 -0.05 -21.57 16 14 N -0.61 -11.38 2.98 -819.64 -2.44 -13.82 16 15 C 0.12 2.15 5.65 86.36 0.49 2.64 16 16 C -0.09 -1.28 2.78 -11.46 -0.03 -1.31 16 17 H 0.12 1.71 8.14 -2.39 -0.02 1.70 16 18 C 0.50 8.24 7.63 71.23 0.54 8.78 16 19 O -0.54 -11.85 16.74 21.96 0.37 -11.48 16 20 O -0.51 -6.60 13.35 -51.38 -0.69 -7.28 16 21 C -0.10 -1.41 4.11 30.62 0.13 -1.28 16 22 C 0.10 1.17 3.61 30.54 0.11 1.28 16 23 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 24 O -0.57 -6.42 13.32 -148.98 -1.98 -8.41 16 25 C 0.07 0.80 5.94 86.23 0.51 1.32 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.03 1.29 7.58 -2.38 -0.02 1.27 16 28 H 0.03 1.30 7.19 -2.39 -0.02 1.28 16 29 H 0.03 1.54 8.10 -2.38 -0.02 1.52 16 30 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 31 H 0.12 2.31 7.68 -2.39 -0.02 2.30 16 32 H 0.12 2.38 7.95 -2.39 -0.02 2.36 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 2.06 7.00 -2.39 -0.02 2.04 16 35 H 0.43 1.80 9.10 -74.06 -0.67 1.13 16 36 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 37 H 0.08 1.26 8.07 -2.39 -0.02 1.24 16 38 H 0.40 1.07 9.08 -74.05 -0.67 0.40 16 39 H 0.12 0.93 5.93 -2.39 -0.01 0.91 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -83.94 331.83 0.57 -83.37 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -0.33 Total: 7.37 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 3.51 Total: -11.64 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.14 Total: -74.80 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -2.35 Total: -48.74 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.88 Total: 44.44 kcal Total: -83.94 0.57 -83.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.263 kcal (2) G-P(sol) polarization free energy of solvation -83.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds