Wall clock time and date at job start Tue Mar 31 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47367 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47327 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00050 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00110 * 180.02562 * 13 12 11 16 16 C 1.47152 * 120.98018 * 359.71835 * 15 13 12 17 17 C 1.53718 * 108.16094 * 129.43324 * 16 15 13 18 18 O 1.42955 * 109.14681 * 52.53760 * 17 16 15 19 19 C 1.42966 * 114.17025 * 297.28749 * 18 17 16 20 20 H 1.08999 * 109.50747 * 302.66227 * 19 18 17 21 21 C 1.50694 * 109.51549 * 182.50164 * 19 18 17 22 22 O 1.20823 * 120.00359 * 355.25968 * 21 19 18 23 23 O 1.34235 * 119.99794 * 175.25430 * 21 19 18 24 24 C 1.47152 * 120.98435 * 180.02562 * 15 13 12 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 28 28 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 29 29 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 30 30 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 31 31 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 32 32 H 1.08998 * 109.47065 * 300.00398 * 12 11 10 33 33 H 1.09001 * 109.46892 * 60.00134 * 12 11 10 34 34 H 1.09004 * 109.68519 * 249.21230 * 16 15 13 35 35 H 1.09004 * 109.68473 * 9.76674 * 16 15 13 36 36 H 1.08997 * 109.65410 * 292.56802 * 17 16 15 37 37 H 1.09002 * 109.44085 * 172.37520 * 17 16 15 38 38 H 0.96698 * 116.99692 * 180.02562 * 23 21 19 39 39 H 1.08997 * 109.67892 * 350.23247 * 24 15 13 40 40 H 1.08994 * 109.68043 * 110.78553 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 6 5.5515 -2.6365 -0.0089 12 6 6.0616 -4.0790 -0.0056 13 6 7.5686 -4.0790 -0.0119 14 8 8.1750 -3.0287 -0.0179 15 7 8.2425 -5.2462 -0.0109 16 6 7.5287 -6.5329 0.0026 17 6 8.0981 -7.4085 -1.1253 18 8 9.5206 -7.4708 -0.9980 19 6 10.1767 -6.2084 -1.1385 20 1 9.9237 -5.7722 -2.1048 21 6 11.6682 -6.4034 -1.0478 22 8 12.1206 -7.4948 -0.7949 23 8 12.4943 -5.3645 -1.2482 24 6 9.7138 -5.2714 -0.0164 25 1 -0.4850 0.8401 0.0004 26 1 3.8712 -0.6827 -0.8987 27 1 3.8785 -0.6777 0.8813 28 1 3.6619 -3.1474 0.8900 29 1 3.6545 -3.1533 -0.8899 30 1 5.9115 -2.1255 -0.9018 31 1 5.9182 -2.1199 0.8781 32 1 5.7016 -4.5897 0.8875 33 1 5.6949 -4.5960 -0.8924 34 1 7.6772 -7.0252 0.9638 35 1 6.4647 -6.3643 -0.1635 36 1 7.8376 -6.9767 -2.0916 37 1 7.6814 -8.4129 -1.0504 38 1 13.4431 -5.5386 -1.1800 39 1 10.0975 -4.2670 -0.1950 40 1 10.0782 -5.6389 0.9429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:51 Heat of formation + Delta-G solvation = -178.133639 kcal Electronic energy + Delta-G solvation = -22280.354720 eV Core-core repulsion = 18674.099821 eV Total energy + Delta-G solvation = -3606.254899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.23313 -40.19828 -38.67276 -36.59876 -35.23987 -35.07329 -32.84231 -32.30849 -30.25968 -28.63953 -26.60023 -25.01330 -23.61128 -22.13289 -21.46505 -20.09371 -19.41620 -18.64362 -17.72024 -17.13479 -16.83224 -16.74754 -16.52275 -16.05810 -15.80433 -15.14403 -14.74913 -14.68295 -14.23004 -13.95855 -13.57284 -13.27060 -12.86824 -12.58965 -12.45962 -12.27739 -12.01713 -12.00104 -11.77365 -11.50122 -11.16479 -10.95658 -10.79028 -10.75783 -10.58347 -10.05110 -9.86539 -9.67964 -9.48310 -9.14586 -9.03729 -8.51333 -6.02491 -4.00131 1.59354 1.98483 2.44630 2.46923 3.33759 3.41026 3.46646 3.49715 3.98160 4.22383 4.33790 4.44621 4.48271 4.56040 4.63268 4.79289 4.98612 5.05973 5.14057 5.20043 5.22970 5.32270 5.32979 5.66309 5.89641 5.94999 5.95957 6.09056 6.33818 6.35480 6.62793 6.75844 6.93827 6.99758 7.34861 7.36710 7.47725 7.82486 7.93972 8.55983 9.02345 9.60832 11.10971 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036815 B = 0.002680 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.367843 B =10444.930974 C =11037.554862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.137 4.137 13 C 0.519 3.481 14 O -0.528 6.528 15 N -0.625 5.625 16 C 0.069 3.931 17 C 0.049 3.951 18 O -0.356 6.356 19 C 0.089 3.911 20 H 0.105 0.895 21 C 0.490 3.510 22 O -0.490 6.490 23 O -0.508 6.508 24 C 0.092 3.908 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.016 0.984 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.418 0.582 39 H 0.116 0.884 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.279 -16.061 -2.232 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.177 4.177 13 C 0.309 3.691 14 O -0.403 6.403 15 N -0.362 5.362 16 C -0.054 4.054 17 C -0.028 4.028 18 O -0.275 6.275 19 C 0.028 3.972 20 H 0.122 0.878 21 C 0.330 3.670 22 O -0.376 6.376 23 O -0.321 6.321 24 C -0.031 4.031 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.278 0.722 39 H 0.134 0.866 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.241 -15.753 -2.152 27.340 hybrid contribution 0.801 0.817 -0.022 1.145 sum 23.043 -14.936 -2.173 27.546 Atomic orbital electron populations 1.69919 1.06314 1.26851 1.51403 1.25048 0.94734 0.99239 0.94595 0.86772 0.80429 0.83548 0.78538 1.20317 1.21454 1.18899 1.21174 0.89641 0.94377 1.50600 0.91108 1.19575 0.96936 0.92442 0.96335 1.21475 0.91533 1.00019 1.00955 1.21512 0.97353 0.92628 1.03019 1.21826 0.89648 1.02007 1.04213 1.21199 0.91048 0.82313 0.74578 1.90714 1.70410 1.30667 1.48519 1.48248 1.05634 1.06624 1.75649 1.22635 0.98372 0.84015 1.00427 1.23246 0.79627 1.02003 0.97964 1.88032 1.19559 1.26465 1.93433 1.21694 0.86875 0.86970 1.01614 0.87775 1.22554 0.89309 0.81946 0.73214 1.90765 1.77762 1.26474 1.42559 1.84492 1.23471 1.40624 1.83528 1.22032 0.81579 1.01702 0.97832 0.92797 0.97058 0.96603 0.92794 0.92838 0.91708 0.91697 0.88726 0.88804 0.89892 0.87512 0.91675 0.86356 0.72191 0.86576 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.93 5.15 -26.73 -0.14 -2.06 16 11 C -0.11 -1.70 4.50 -26.73 -0.12 -1.82 16 12 C -0.14 -1.58 4.07 -27.88 -0.11 -1.69 16 13 C 0.52 6.46 7.71 -10.99 -0.08 6.37 16 14 O -0.53 -8.65 15.45 5.56 0.09 -8.56 16 15 N -0.62 -5.90 3.01 -171.99 -0.52 -6.42 16 16 C 0.07 0.43 6.57 -3.31 -0.02 0.41 16 17 C 0.05 0.29 7.00 37.53 0.26 0.55 16 18 O -0.36 -3.24 9.92 -55.11 -0.55 -3.79 16 19 C 0.09 0.74 3.30 -27.71 -0.09 0.65 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 21 C 0.49 4.31 7.66 36.00 0.28 4.59 16 22 O -0.49 -5.92 17.27 -25.45 -0.44 -6.36 16 23 O -0.51 -3.08 13.42 -39.27 -0.53 -3.61 16 24 C 0.09 0.83 5.91 -3.51 -0.02 0.81 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.01 0.27 7.58 -51.93 -0.39 -0.13 16 27 H 0.02 0.38 7.19 -51.93 -0.37 0.01 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.09 0.92 8.01 -51.93 -0.42 0.51 16 33 H 0.09 0.88 7.67 -51.93 -0.40 0.48 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.51 6.05 -51.93 -0.31 0.20 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.42 0.69 9.10 45.56 0.41 1.11 16 39 H 0.12 1.16 7.08 -51.93 -0.37 0.79 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -37.30 334.46 -6.63 -43.93 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -5.23 Total: -4.22 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.59 Total: -6.10 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.26 Total: -33.77 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.43 Total: -22.31 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.30 -6.63 -43.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.202 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds