Wall clock time and date at job start Tue Mar 31 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47476 * 269.99909 * 3 2 1 5 5 H 1.48499 * 109.47227 * 30.00114 * 3 2 1 6 6 H 1.48502 * 109.47081 * 150.00007 * 3 2 1 7 7 C 1.37878 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00032 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46966 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46992 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00324 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99864 * 180.02562 * 13 12 11 16 16 C 1.47148 * 120.98143 * 0.02562 * 15 13 12 17 17 C 1.53296 * 108.38391 * 230.55505 * 16 15 13 18 18 O 1.42965 * 109.22220 * 307.69831 * 17 16 15 19 19 C 1.42962 * 114.16745 * 62.58386 * 18 17 16 20 20 H 1.09000 * 109.51132 * 57.33867 * 19 18 17 21 21 C 1.50699 * 109.51209 * 177.49603 * 19 18 17 22 22 O 1.20818 * 120.00200 * 4.99608 * 21 19 18 23 23 O 1.34229 * 119.99489 * 184.99696 * 21 19 18 24 24 C 1.47158 * 120.97980 * 180.02562 * 15 13 12 25 25 H 0.97002 * 120.00133 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47527 * 59.99548 * 9 7 2 27 27 H 1.09001 * 109.46701 * 299.99568 * 9 7 2 28 28 H 1.08998 * 109.47501 * 59.99950 * 10 9 7 29 29 H 1.09001 * 109.47104 * 299.99418 * 10 9 7 30 30 H 1.08998 * 109.46878 * 59.99787 * 11 10 9 31 31 H 1.09001 * 109.46918 * 299.99751 * 11 10 9 32 32 H 1.09008 * 109.46698 * 60.00150 * 12 11 10 33 33 H 1.08993 * 109.47488 * 300.00126 * 12 11 10 34 34 H 1.09007 * 109.68058 * 110.83778 * 16 15 13 35 35 H 1.08991 * 109.68388 * 350.27962 * 16 15 13 36 36 H 1.09001 * 109.51592 * 187.77795 * 17 16 15 37 37 H 1.09000 * 109.51290 * 67.62109 * 17 16 15 38 38 H 0.96698 * 116.99940 * 179.97438 * 23 21 19 39 39 H 1.08995 * 109.68247 * 249.16639 * 24 15 13 40 40 H 1.09001 * 109.68235 * 9.68340 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 6 6.0615 -4.0791 0.0004 13 6 7.5685 -4.0791 -0.0003 14 8 8.1750 -3.0288 -0.0006 15 7 8.2423 -5.2463 -0.0005 16 6 7.5285 -6.5331 -0.0007 17 6 8.1023 -7.4044 1.1226 18 8 9.5243 -7.4672 0.9898 19 6 10.1810 -6.2043 1.1231 20 1 9.9318 -5.7645 2.0888 21 6 11.6722 -6.3997 1.0273 22 8 12.1233 -7.4911 0.7722 23 8 12.4992 -5.3612 1.2256 24 6 9.7137 -5.2715 -0.0006 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8751 -0.6797 -0.8895 28 1 3.6585 -3.1503 -0.8903 29 1 3.6579 -3.1506 0.8897 30 1 5.9148 -2.1228 0.8899 31 1 5.9148 -2.1227 -0.8901 32 1 5.6981 -4.5932 -0.8895 33 1 5.6982 -4.5926 0.8905 34 1 7.6696 -7.0311 -0.9600 35 1 6.4659 -6.3634 0.1727 36 1 7.6854 -8.4091 1.0530 37 1 7.8457 -6.9689 2.0883 38 1 13.4476 -5.5355 1.1542 39 1 10.0744 -5.6426 -0.9599 40 1 10.0981 -4.2663 0.1721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:54 Heat of formation + Delta-G solvation = -178.131553 kcal Electronic energy + Delta-G solvation = -22281.217487 eV Core-core repulsion = 18674.962679 eV Total energy + Delta-G solvation = -3606.254809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23799 -40.20135 -38.67773 -36.60010 -35.23951 -35.07424 -32.84828 -32.31756 -30.26321 -28.65803 -26.60069 -25.01272 -23.60537 -22.13387 -21.46268 -20.09402 -19.41893 -18.64361 -17.72201 -17.14010 -16.83579 -16.74551 -16.52202 -16.05974 -15.80812 -15.14589 -14.75160 -14.68467 -14.23029 -13.95918 -13.57332 -13.27853 -12.86701 -12.58818 -12.46193 -12.27639 -12.01779 -11.99898 -11.77341 -11.50119 -11.16436 -10.95669 -10.78879 -10.75937 -10.58418 -10.05258 -9.86246 -9.68302 -9.48322 -9.14578 -9.03951 -8.51290 -6.02472 -4.00143 1.59330 1.98400 2.44592 2.46689 3.33824 3.41031 3.46563 3.49599 3.98241 4.23104 4.33641 4.44951 4.48279 4.55993 4.62878 4.79220 4.98564 5.05877 5.14029 5.20048 5.22894 5.32283 5.32977 5.66288 5.89606 5.94994 5.95954 6.08991 6.33682 6.35462 6.62785 6.75820 6.93797 6.99684 7.34830 7.36723 7.47706 7.82468 7.93888 8.55960 9.02304 9.60839 11.10987 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036811 B = 0.002680 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.462515 B =10444.226703 C =11036.679597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.137 4.137 13 C 0.519 3.481 14 O -0.528 6.528 15 N -0.625 5.625 16 C 0.068 3.932 17 C 0.049 3.951 18 O -0.356 6.356 19 C 0.088 3.912 20 H 0.105 0.895 21 C 0.490 3.510 22 O -0.490 6.490 23 O -0.508 6.508 24 C 0.092 3.908 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.080 0.920 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.287 -16.054 2.279 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.177 4.177 13 C 0.309 3.691 14 O -0.403 6.403 15 N -0.361 5.361 16 C -0.055 4.055 17 C -0.028 4.028 18 O -0.275 6.275 19 C 0.028 3.972 20 H 0.122 0.878 21 C 0.330 3.670 22 O -0.376 6.376 23 O -0.321 6.321 24 C -0.032 4.032 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.278 0.722 39 H 0.098 0.902 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.249 -15.747 2.200 27.347 hybrid contribution 0.802 0.816 -0.028 1.144 sum 23.051 -14.931 2.171 27.549 Atomic orbital electron populations 1.69920 1.06312 1.26853 1.51407 1.25045 0.94736 0.99240 0.94597 0.86772 0.80418 0.83545 0.78547 1.20312 1.21458 1.18903 1.21174 0.89641 0.94379 1.50597 0.91109 1.19574 0.96934 0.92439 0.96334 1.21476 0.91533 1.00018 1.00954 1.21515 0.97355 0.92625 1.03020 1.21825 0.89646 1.02009 1.04214 1.21200 0.91049 0.82307 0.74575 1.90715 1.70407 1.30662 1.48522 1.48244 1.05625 1.06604 1.75661 1.22545 0.98356 0.84069 1.00491 1.23172 0.79652 1.02035 0.97987 1.88035 1.19583 1.26394 1.93471 1.21693 0.86873 0.86977 1.01620 0.87780 1.22550 0.89295 0.81945 0.73229 1.90764 1.77807 1.26465 1.42521 1.84490 1.23461 1.40645 1.83519 1.22032 0.81567 1.01744 0.97810 0.92797 0.96618 0.97046 0.92824 0.92806 0.91709 0.91694 0.88729 0.88796 0.89910 0.87509 0.86322 0.91713 0.72189 0.90180 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.92 5.15 -26.73 -0.14 -2.06 16 11 C -0.11 -1.70 4.50 -26.73 -0.12 -1.82 16 12 C -0.14 -1.58 4.07 -27.88 -0.11 -1.69 16 13 C 0.52 6.46 7.71 -10.99 -0.08 6.37 16 14 O -0.53 -8.64 15.45 5.55 0.09 -8.56 16 15 N -0.62 -5.90 3.02 -172.25 -0.52 -6.42 16 16 C 0.07 0.43 6.54 -3.54 -0.02 0.41 16 17 C 0.05 0.29 6.99 37.31 0.26 0.55 16 18 O -0.36 -3.24 9.92 -55.11 -0.55 -3.79 16 19 C 0.09 0.74 3.30 -27.71 -0.09 0.65 16 20 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 21 C 0.49 4.31 7.66 36.01 0.28 4.59 16 22 O -0.49 -5.92 17.27 -25.45 -0.44 -6.36 16 23 O -0.51 -3.08 13.42 -39.25 -0.53 -3.61 16 24 C 0.09 0.83 5.91 -3.51 -0.02 0.81 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.09 0.92 8.01 -51.92 -0.42 0.51 16 33 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.51 6.05 -51.93 -0.31 0.20 16 36 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.42 0.69 9.10 45.56 0.41 1.11 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.12 1.16 7.08 -51.93 -0.37 0.79 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -37.30 334.43 -6.64 -43.94 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -5.23 Total: -4.22 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.60 Total: -6.10 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.25 Total: -33.77 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.43 Total: -22.31 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.30 -6.64 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.195 kcal (2) G-P(sol) polarization free energy of solvation -37.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds