Wall clock time and date at job start Tue Mar 31 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47476 * 269.99909 * 3 2 1 5 5 H 1.48499 * 109.47227 * 30.00114 * 3 2 1 6 6 H 1.48502 * 109.47081 * 150.00007 * 3 2 1 7 7 C 1.37878 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99957 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00032 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46955 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46966 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46992 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00324 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99864 * 180.02562 * 13 12 11 16 16 C 1.47148 * 120.98143 * 0.02562 * 15 13 12 17 17 C 1.53296 * 108.38391 * 230.55505 * 16 15 13 18 18 O 1.42965 * 109.22220 * 307.69831 * 17 16 15 19 19 C 1.42962 * 114.16745 * 62.58386 * 18 17 16 20 20 H 1.09000 * 109.51132 * 57.33867 * 19 18 17 21 21 C 1.50699 * 109.51209 * 177.49603 * 19 18 17 22 22 O 1.20818 * 120.00200 * 4.99608 * 21 19 18 23 23 O 1.34229 * 119.99489 * 184.99696 * 21 19 18 24 24 C 1.47158 * 120.97980 * 180.02562 * 15 13 12 25 25 H 0.97002 * 120.00133 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47527 * 59.99548 * 9 7 2 27 27 H 1.09001 * 109.46701 * 299.99568 * 9 7 2 28 28 H 1.08998 * 109.47501 * 59.99950 * 10 9 7 29 29 H 1.09001 * 109.47104 * 299.99418 * 10 9 7 30 30 H 1.08998 * 109.46878 * 59.99787 * 11 10 9 31 31 H 1.09001 * 109.46918 * 299.99751 * 11 10 9 32 32 H 1.09008 * 109.46698 * 60.00150 * 12 11 10 33 33 H 1.08993 * 109.47488 * 300.00126 * 12 11 10 34 34 H 1.09007 * 109.68058 * 110.83778 * 16 15 13 35 35 H 1.08991 * 109.68388 * 350.27962 * 16 15 13 36 36 H 1.09001 * 109.51592 * 187.77795 * 17 16 15 37 37 H 1.09000 * 109.51290 * 67.62109 * 17 16 15 38 38 H 0.96698 * 116.99940 * 179.97438 * 23 21 19 39 39 H 1.08995 * 109.68247 * 249.16639 * 24 15 13 40 40 H 1.09001 * 109.68235 * 9.68340 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 6 6.0615 -4.0791 0.0004 13 6 7.5685 -4.0791 -0.0003 14 8 8.1750 -3.0288 -0.0006 15 7 8.2423 -5.2463 -0.0005 16 6 7.5285 -6.5331 -0.0007 17 6 8.1023 -7.4044 1.1226 18 8 9.5243 -7.4672 0.9898 19 6 10.1810 -6.2043 1.1231 20 1 9.9318 -5.7645 2.0888 21 6 11.6722 -6.3997 1.0273 22 8 12.1233 -7.4911 0.7722 23 8 12.4992 -5.3612 1.2256 24 6 9.7137 -5.2715 -0.0006 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8751 -0.6797 -0.8895 28 1 3.6585 -3.1503 -0.8903 29 1 3.6579 -3.1506 0.8897 30 1 5.9148 -2.1228 0.8899 31 1 5.9148 -2.1227 -0.8901 32 1 5.6981 -4.5932 -0.8895 33 1 5.6982 -4.5926 0.8905 34 1 7.6696 -7.0311 -0.9600 35 1 6.4659 -6.3634 0.1727 36 1 7.6854 -8.4091 1.0530 37 1 7.8457 -6.9689 2.0883 38 1 13.4476 -5.5355 1.1542 39 1 10.0744 -5.6426 -0.9599 40 1 10.0981 -4.2663 0.1721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:53 Heat of formation + Delta-G solvation = -205.362220 kcal Electronic energy + Delta-G solvation = -22282.398298 eV Core-core repulsion = 18674.962679 eV Total energy + Delta-G solvation = -3607.435619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.92637 -40.98399 -39.42654 -37.24941 -36.69022 -35.92099 -34.62721 -33.20213 -31.78128 -29.40477 -27.90897 -26.06415 -24.32082 -23.45839 -22.23608 -21.70578 -20.20851 -19.30249 -18.86374 -18.46164 -17.81722 -17.47242 -17.36210 -16.94888 -16.60769 -16.27580 -15.88076 -15.72072 -15.35108 -14.93229 -14.64148 -14.60065 -13.92782 -13.77349 -13.63927 -13.62361 -13.15607 -12.86998 -12.77366 -12.66899 -12.29326 -12.07023 -12.04622 -11.74376 -11.68684 -11.46286 -11.40161 -11.31343 -11.24241 -10.81148 -10.74621 -9.77204 -8.28393 -6.31192 0.91291 1.35946 1.37458 1.44592 1.49968 1.54617 1.73936 2.37001 2.94770 3.07295 3.32526 3.51878 3.70458 3.90836 3.98446 4.03719 4.14389 4.19946 4.26476 4.36238 4.52055 4.60305 4.65867 4.75678 4.76860 4.85271 4.90946 5.15650 5.18925 5.26104 5.30978 5.43551 5.62767 5.68237 5.70552 5.82689 6.19075 6.31196 6.77196 6.84671 7.04739 7.33754 8.88129 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036811 B = 0.002680 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.462515 B =10444.226703 C =11036.679597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.018 4.018 10 C -0.093 4.093 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.518 3.482 14 O -0.577 6.577 15 N -0.618 5.618 16 C 0.063 3.937 17 C 0.045 3.955 18 O -0.376 6.376 19 C 0.092 3.908 20 H 0.115 0.885 21 C 0.498 3.502 22 O -0.528 6.528 23 O -0.502 6.502 24 C 0.093 3.907 25 H 0.266 0.734 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.437 0.563 39 H 0.083 0.917 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.476 -16.716 2.507 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.567 4.567 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.169 4.169 13 C 0.309 3.691 14 O -0.456 6.456 15 N -0.353 5.353 16 C -0.058 4.058 17 C -0.031 4.031 18 O -0.295 6.295 19 C 0.032 3.968 20 H 0.133 0.867 21 C 0.339 3.661 22 O -0.416 6.416 23 O -0.317 6.317 24 C -0.030 4.030 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.300 0.700 39 H 0.101 0.899 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 23.463 -16.447 2.432 28.757 hybrid contribution 0.404 0.948 -0.097 1.035 sum 23.867 -15.499 2.335 28.554 Atomic orbital electron populations 1.70061 1.08131 1.28040 1.52989 1.25992 0.95595 1.03386 0.94380 0.85706 0.79432 0.78692 0.79120 1.19332 1.20890 1.17484 1.21556 0.92159 0.93187 1.49777 0.94355 1.19585 0.93833 0.96055 0.96066 1.21333 0.93613 0.96628 1.01493 1.21302 0.94880 0.95632 1.01841 1.21742 0.89039 0.99336 1.06769 1.21295 0.91358 0.82366 0.74072 1.90701 1.71256 1.32521 1.51106 1.48252 1.05911 1.07013 1.74107 1.22839 0.99202 0.82481 1.01307 1.23415 0.78142 1.03420 0.98138 1.88029 1.21292 1.26644 1.93571 1.21680 0.86647 0.86795 1.01703 0.86709 1.22650 0.89731 0.81614 0.72109 1.90750 1.78472 1.27910 1.44509 1.84464 1.24960 1.39570 1.82709 1.21997 0.81431 1.01271 0.98327 0.92566 0.96790 0.97004 0.92368 0.92198 0.92887 0.93046 0.86339 0.85971 0.89004 0.85407 0.83961 0.90912 0.69973 0.89915 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 2 C 0.00 0.18 5.47 84.65 0.46 0.64 16 3 Si 0.95 45.33 27.47 68.60 1.88 47.22 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 7 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.36 5.15 30.60 0.16 -3.20 16 11 C -0.10 -2.95 4.50 30.60 0.14 -2.81 16 12 C -0.13 -2.58 4.07 29.85 0.12 -2.46 16 13 C 0.52 11.91 7.71 87.66 0.68 12.58 16 14 O -0.58 -18.52 15.45 -3.05 -0.05 -18.57 16 15 N -0.62 -10.31 3.02 -817.27 -2.47 -12.78 16 16 C 0.06 0.59 6.54 86.35 0.56 1.15 16 17 C 0.04 0.39 6.99 72.08 0.50 0.90 16 18 O -0.38 -6.12 9.92 -129.98 -1.29 -7.41 16 19 C 0.09 1.40 3.30 29.96 0.10 1.50 16 20 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 21 C 0.50 8.28 7.66 71.24 0.55 8.83 16 22 O -0.53 -12.47 17.27 28.40 0.49 -11.98 16 23 O -0.50 -5.46 13.42 -51.40 -0.69 -6.15 16 24 C 0.09 1.56 5.91 86.37 0.51 2.07 16 25 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 26 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 27 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 32 H 0.12 1.84 8.01 -2.38 -0.02 1.82 16 33 H 0.12 1.78 7.66 -2.39 -0.02 1.76 16 34 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.13 0.66 6.05 -2.39 -0.01 0.65 16 36 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.44 0.84 9.10 -74.06 -0.67 0.17 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 2.03 7.08 -2.39 -0.02 2.01 16 Total: -1.00 -81.94 334.43 2.64 -79.29 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: 0.32 Total: 1.87 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.15 Total: -11.81 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -2.17 Total: -72.45 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.54 Total: -44.12 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.22 kcal Total: -81.94 2.64 -79.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.071 kcal (2) G-P(sol) polarization free energy of solvation -81.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds