Wall clock time and date at job start Tue Mar 31 2020 05:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00153 * 3 2 1 5 5 H 1.48508 * 109.46868 * 30.00286 * 3 2 1 6 6 H 1.48502 * 109.47066 * 149.99642 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00271 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46912 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 12 17 17 H 1.09004 * 110.27448 * 307.08626 * 16 15 14 18 18 C 1.54945 * 110.30782 * 185.00091 * 16 15 14 19 19 C 1.55314 * 100.94185 * 204.63638 * 18 16 15 20 20 H 1.08994 * 110.84532 * 275.94476 * 19 18 16 21 21 C 1.50700 * 110.84836 * 152.32195 * 19 18 16 22 22 O 1.20816 * 120.00153 * 359.97438 * 21 19 18 23 23 O 1.34227 * 119.99800 * 180.02562 * 21 19 18 24 24 C 1.54380 * 102.24929 * 34.13122 * 19 18 16 25 25 O 1.43237 * 107.59011 * 338.64346 * 24 19 18 26 26 H 0.97000 * 120.00354 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47152 * 59.99933 * 9 7 2 28 28 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 29 29 H 1.09002 * 109.47045 * 60.00033 * 10 9 7 30 30 H 1.09001 * 109.47375 * 299.99958 * 10 9 7 31 31 H 0.97005 * 120.00266 * 0.02562 * 11 10 9 32 32 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 33 33 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 34 34 H 1.09001 * 109.47194 * 299.99742 * 15 14 12 35 35 H 1.08992 * 109.47399 * 59.99914 * 15 14 12 36 36 H 1.08996 * 111.12700 * 322.55265 * 18 16 15 37 37 H 1.08997 * 111.12762 * 86.71848 * 18 16 15 38 38 H 0.96696 * 117.00180 * 179.97438 * 23 21 19 39 39 H 1.09002 * 109.83456 * 98.15854 * 24 19 18 40 40 H 1.09002 * 109.82999 * 219.13366 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5129 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0027 13 8 3.3996 -6.0979 -0.0040 14 6 1.4333 -7.4031 -0.0026 15 6 2.4276 -8.5660 -0.0038 16 6 1.6626 -9.8910 -0.0044 17 1 0.9401 -9.9104 0.8116 18 6 2.6475 -11.0806 0.1211 19 6 1.8176 -12.2204 -0.5304 20 1 1.1375 -12.6679 0.1943 21 6 2.7214 -13.2634 -1.1355 22 8 3.9210 -13.1355 -1.0688 23 8 2.1938 -14.3341 -1.7494 24 6 1.0341 -11.4688 -1.6279 25 8 1.0002 -10.0838 -1.2642 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8727 -3.6047 0.8877 30 1 2.8713 -3.6039 -0.8923 31 1 0.5429 -4.9308 -0.0005 32 1 0.8057 -7.4604 -0.8920 33 1 0.8076 -7.4613 0.8880 34 1 3.0536 -8.5079 -0.8942 35 1 3.0549 -8.5086 0.8857 36 1 3.5638 -10.8927 -0.4384 37 1 2.8657 -11.3015 1.1659 38 1 2.8134 -14.9759 -2.1225 39 1 1.5368 -11.5868 -2.5879 40 1 0.0184 -11.8596 -1.6905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:45 Heat of formation + Delta-G solvation = -199.272892 kcal Electronic energy + Delta-G solvation = -21592.960486 eV Core-core repulsion = 17985.788920 eV Total energy + Delta-G solvation = -3607.171566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.16503 -39.62740 -38.99683 -36.66251 -34.90702 -33.66475 -32.90442 -32.80311 -30.04703 -28.78577 -25.30022 -24.76401 -23.82383 -21.43968 -21.12199 -20.77858 -19.81038 -18.56830 -17.75013 -17.24521 -16.58179 -16.20048 -15.92508 -15.77546 -15.21837 -15.05769 -14.73930 -14.43868 -13.90588 -13.68303 -13.56849 -13.24414 -12.73123 -12.44851 -12.28890 -12.17201 -12.01322 -11.91294 -11.49554 -11.26517 -11.17904 -11.10366 -11.02326 -10.92369 -10.62591 -10.30257 -9.87997 -9.76905 -9.42391 -9.13936 -8.51199 -8.31898 -6.08164 -4.10877 1.62618 2.40169 3.08496 3.30404 3.36323 3.37197 3.40479 3.66157 3.77612 4.31276 4.36985 4.42584 4.51775 4.74370 4.76592 4.93327 5.14549 5.17323 5.21040 5.26994 5.28770 5.41122 5.48492 5.66612 5.71018 5.95437 5.98521 6.18445 6.38042 6.38584 6.61483 6.77002 6.97932 7.33502 7.53786 7.63824 7.90264 8.07636 8.29791 8.72184 8.95281 9.53827 11.03410 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.056481 B = 0.002131 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.619704 B =13137.229185 C =13398.587181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.724 5.724 12 C 0.503 3.497 13 O -0.555 6.555 14 C -0.139 4.139 15 C -0.101 4.101 16 C 0.081 3.919 17 H 0.080 0.920 18 C -0.137 4.137 19 C -0.122 4.122 20 H 0.124 0.876 21 C 0.490 3.510 22 O -0.505 6.505 23 O -0.515 6.515 24 C 0.069 3.931 25 O -0.369 6.369 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.398 0.602 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.413 0.587 39 H 0.073 0.927 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -28.681 -0.693 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.374 5.374 12 C 0.289 3.711 13 O -0.434 6.434 14 C -0.179 4.179 15 C -0.139 4.139 16 C 0.024 3.976 17 H 0.098 0.902 18 C -0.175 4.175 19 C -0.141 4.141 20 H 0.142 0.858 21 C 0.331 3.669 22 O -0.392 6.392 23 O -0.327 6.327 24 C -0.008 4.008 25 O -0.288 6.288 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.231 0.769 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.272 0.728 39 H 0.091 0.909 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.453 -28.044 -0.627 28.055 hybrid contribution 0.361 0.264 -0.132 0.466 sum -0.092 -27.780 -0.758 27.791 Atomic orbital electron populations 1.69953 1.06076 1.26849 1.50438 1.25004 0.94907 0.99420 0.95027 0.86509 0.79830 0.82997 0.78195 1.20561 1.21176 1.19743 1.21064 0.93249 0.90431 1.51253 0.92269 1.19325 0.94215 0.91165 0.97822 1.21700 0.96041 0.81732 1.00678 1.46359 1.10534 1.06659 1.73838 1.20642 0.88278 0.85736 0.76421 1.90665 1.14183 1.87965 1.50574 1.21634 0.99322 0.92388 1.04575 1.21472 0.97240 0.90556 1.04637 1.23138 0.92992 0.95001 0.86498 0.90242 1.23363 0.99546 0.91726 1.02846 1.22642 0.97867 0.93929 0.99680 0.85784 1.22997 0.87933 0.81039 0.74893 1.90762 1.16814 1.76241 1.55423 1.84527 1.45865 1.33944 1.68376 1.22970 1.00036 0.81646 0.96168 1.88503 1.78270 1.23543 1.38533 0.92861 0.95949 0.95949 0.92677 0.92672 0.76881 0.88455 0.89189 0.90162 0.89604 0.88321 0.88729 0.72787 0.90918 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.62 5.61 -4.05 -0.02 2.60 16 11 N -0.72 -12.73 5.56 -60.30 -0.33 -13.06 16 12 C 0.50 8.45 7.83 -10.98 -0.09 8.36 16 13 O -0.55 -11.44 15.98 5.56 0.09 -11.35 16 14 C -0.14 -1.63 5.63 -27.88 -0.16 -1.78 16 15 C -0.10 -1.11 4.23 -26.73 -0.11 -1.22 16 16 C 0.08 0.68 3.40 -25.70 -0.09 0.59 16 17 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 18 C -0.14 -1.04 5.70 -24.48 -0.14 -1.18 16 19 C -0.12 -0.76 3.50 -89.82 -0.31 -1.08 16 20 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 21 C 0.49 3.66 7.50 36.01 0.27 3.93 16 22 O -0.51 -5.53 16.45 -18.74 -0.31 -5.84 16 23 O -0.51 -2.56 13.42 -39.25 -0.53 -3.09 16 24 C 0.07 0.49 7.39 37.88 0.28 0.77 16 25 O -0.37 -3.60 10.81 -35.23 -0.38 -3.98 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 6.00 8.47 -40.82 -0.35 5.65 16 32 H 0.10 1.08 7.99 -51.93 -0.42 0.66 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.09 0.95 8.10 -51.93 -0.42 0.52 16 36 H 0.10 0.94 7.29 -51.93 -0.38 0.56 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.41 0.46 9.10 45.56 0.41 0.88 16 39 H 0.07 0.53 7.81 -51.93 -0.41 0.12 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -35.33 343.01 -6.82 -42.14 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.32 Total: 1.25 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.92 Total: -2.23 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.40 Total: -38.59 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.13 Total: -24.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.33 -6.82 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.128 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds