Wall clock time and date at job start Tue Mar 31 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99458 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00392 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47397 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47504 * 305.00263 * 15 14 13 17 17 C 1.50706 * 109.46758 * 65.00552 * 15 14 13 18 18 O 1.20821 * 120.00159 * 359.97438 * 17 15 14 19 19 O 1.34233 * 119.99775 * 179.97438 * 17 15 14 20 20 C 1.53007 * 109.47244 * 184.99926 * 15 14 13 21 21 H 1.09002 * 110.80492 * 303.63216 * 20 15 14 22 22 C 1.54811 * 110.90880 * 180.02562 * 20 15 14 23 23 C 1.54087 * 104.19081 * 220.92556 * 22 20 15 24 24 O 1.43747 * 107.29368 * 357.97120 * 23 22 20 25 25 C 1.44380 * 106.97332 * 26.51347 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 0.97000 * 119.99567 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47133 * 300.00517 * 14 13 11 33 33 H 1.09008 * 109.47066 * 60.00321 * 14 13 11 34 34 H 0.96691 * 116.99969 * 179.97438 * 19 17 15 35 35 H 1.09002 * 110.48752 * 339.60717 * 22 20 15 36 36 H 1.09003 * 110.48433 * 102.10770 * 22 20 15 37 37 H 1.08996 * 109.88370 * 117.39470 * 23 22 20 38 38 H 1.09006 * 109.87993 * 238.39785 * 23 22 20 39 39 H 1.08997 * 110.61478 * 201.43707 * 25 24 23 40 40 H 1.08997 * 110.61690 * 78.44554 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 8 0.2788 -4.9671 -0.0149 13 7 2.1653 -6.1344 -0.0212 14 6 1.4329 -7.4031 -0.0258 15 6 2.4270 -8.5660 -0.0310 16 1 3.1106 -8.4559 -0.8727 17 6 3.2106 -8.5627 1.2564 18 8 2.9961 -7.7168 2.0919 19 8 4.1467 -9.4997 1.4746 20 6 1.6660 -9.8870 -0.1614 21 1 0.9296 -9.9899 0.6356 22 6 2.6422 -11.0885 -0.1695 23 6 2.0722 -12.0311 -1.2469 24 8 0.8666 -11.4288 -1.7471 25 6 0.9958 -10.0039 -1.5540 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 3.1354 -6.1344 -0.0215 32 1 0.8070 -7.4645 0.8646 33 1 0.8053 -7.4571 -0.9155 34 1 4.6234 -9.4566 2.3147 35 1 3.6464 -10.7624 -0.4405 36 1 2.6512 -11.5792 0.8038 37 1 2.7923 -12.1468 -2.0569 38 1 1.8488 -13.0036 -0.8080 39 1 0.0158 -9.5268 -1.5497 40 1 1.6323 -9.5684 -2.3242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:32 Heat of formation + Delta-G solvation = -191.717497 kcal Electronic energy + Delta-G solvation = -22556.813531 eV Core-core repulsion = 18949.969592 eV Total energy + Delta-G solvation = -3606.843939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12062 -39.53654 -39.00642 -36.59862 -35.55652 -33.43044 -33.34206 -31.09925 -30.42075 -28.36954 -26.18179 -24.75920 -22.84918 -22.23760 -21.27348 -20.75270 -19.49060 -18.57076 -17.34669 -16.91722 -16.80999 -16.40264 -15.68268 -15.47431 -15.38126 -15.29977 -14.90380 -14.38337 -14.09493 -13.61717 -13.32587 -13.18821 -12.89191 -12.45482 -12.18895 -12.01999 -11.95422 -11.77364 -11.65752 -11.42201 -11.16338 -11.11394 -10.92394 -10.68779 -10.55819 -10.06751 -9.92397 -9.63675 -9.14982 -8.98237 -8.78354 -8.29598 -5.93656 -3.97716 1.84896 2.59829 3.28828 3.34113 3.34753 3.41261 3.44683 3.61172 3.89137 4.22847 4.36031 4.49037 4.52052 4.66221 4.68344 4.84832 4.97755 5.00714 5.35098 5.36997 5.39709 5.41308 5.44478 5.58639 5.59003 5.69679 5.83135 6.16505 6.26346 6.29640 6.45283 6.67382 6.92947 7.55582 7.77610 7.86945 7.90231 8.10399 8.41810 8.80665 9.11134 9.65571 11.17392 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.002949 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.085982 B = 9491.114040 C =10054.826820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.739 5.739 14 C 0.132 3.868 15 C -0.081 4.081 16 H 0.118 0.882 17 C 0.476 3.524 18 O -0.492 6.492 19 O -0.515 6.515 20 C -0.114 4.114 21 H 0.097 0.903 22 C -0.146 4.146 23 C 0.044 3.956 24 O -0.376 6.376 25 C 0.053 3.947 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.394 0.606 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.409 0.591 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.512 -26.074 -0.977 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.410 6.410 13 N -0.393 5.393 14 C 0.008 3.992 15 C -0.101 4.101 16 H 0.136 0.864 17 C 0.317 3.683 18 O -0.377 6.377 19 O -0.328 6.328 20 C -0.133 4.133 21 H 0.115 0.885 22 C -0.183 4.183 23 C -0.032 4.032 24 O -0.295 6.295 25 C -0.024 4.024 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.228 0.772 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.268 0.732 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.994 -25.833 -1.204 27.069 hybrid contribution 1.541 1.017 0.776 2.003 sum 9.535 -24.816 -0.428 26.588 Atomic orbital electron populations 1.70013 1.06044 1.26429 1.50356 1.25033 0.94831 0.99230 0.95365 0.86535 0.79992 0.83857 0.77563 1.19778 1.21027 1.21031 1.21268 0.92954 0.91029 1.51149 0.92586 1.18902 0.93187 0.89361 0.98635 1.21857 1.00732 0.91909 1.02443 1.21506 0.88610 0.85488 0.74189 1.90668 1.14420 1.87601 1.48293 1.46057 1.09747 1.05283 1.78204 1.21161 0.93231 0.81305 1.03508 1.21396 0.97311 0.97056 0.94303 0.86387 1.23280 0.77978 0.78105 0.88963 1.90839 1.64577 1.36618 1.45681 1.84560 1.49841 1.53145 1.45236 1.22683 0.98014 0.92176 1.00426 0.88469 1.23030 0.99728 0.95175 1.00415 1.23195 0.87090 0.97212 0.95745 1.88912 1.38381 1.18805 1.83352 1.23673 1.02026 0.82682 0.94023 0.93026 0.95801 0.95794 0.90315 0.90245 0.77220 0.90637 0.90049 0.73193 0.89350 0.90054 0.92223 0.89843 0.88020 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.78 13.29 55.43 0.74 -27.05 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.71 5.64 -27.89 -0.16 -2.86 16 11 C 0.51 10.13 7.83 -10.99 -0.09 10.04 16 12 O -0.53 -12.80 15.98 5.55 0.09 -12.72 16 13 N -0.74 -10.53 4.81 -60.30 -0.29 -10.82 16 14 C 0.13 1.55 4.55 -4.05 -0.02 1.53 16 15 C -0.08 -0.63 1.79 -91.77 -0.16 -0.80 16 16 H 0.12 0.70 8.09 -51.93 -0.42 0.28 16 17 C 0.48 4.25 7.26 36.01 0.26 4.51 16 18 O -0.49 -6.49 16.05 -18.75 -0.30 -6.80 16 19 O -0.52 -2.95 11.10 -39.26 -0.44 -3.38 16 20 C -0.11 -0.78 2.65 -88.61 -0.23 -1.02 16 21 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 22 C -0.15 -0.83 5.09 -25.21 -0.13 -0.96 16 23 C 0.04 0.28 7.70 37.73 0.29 0.58 16 24 O -0.38 -3.48 11.52 -35.23 -0.41 -3.88 16 25 C 0.05 0.39 6.36 38.21 0.24 0.64 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.39 4.63 8.15 -40.82 -0.33 4.30 16 32 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 33 H 0.08 0.92 7.28 -51.92 -0.38 0.54 16 34 H 0.41 1.00 9.10 45.56 0.41 1.42 16 35 H 0.09 0.46 7.00 -51.93 -0.36 0.09 16 36 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.75 7.97 -51.93 -0.41 0.34 16 40 H 0.07 0.44 8.01 -51.93 -0.42 0.03 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -37.76 335.93 -6.33 -44.09 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.24 Total: -0.07 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.52 Total: -1.35 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.45 Total: -37.86 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.05 Total: -26.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.76 -6.33 -44.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.629 kcal (2) G-P(sol) polarization free energy of solvation -37.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds