Wall clock time and date at job start Tue Mar 31 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99458 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00392 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47397 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47504 * 305.00263 * 15 14 13 17 17 C 1.50706 * 109.46758 * 65.00552 * 15 14 13 18 18 O 1.20821 * 120.00159 * 359.97438 * 17 15 14 19 19 O 1.34233 * 119.99775 * 179.97438 * 17 15 14 20 20 C 1.53007 * 109.47244 * 184.99926 * 15 14 13 21 21 H 1.09002 * 110.80492 * 303.63216 * 20 15 14 22 22 C 1.54811 * 110.90880 * 180.02562 * 20 15 14 23 23 C 1.54087 * 104.19081 * 220.92556 * 22 20 15 24 24 O 1.43747 * 107.29368 * 357.97120 * 23 22 20 25 25 C 1.44380 * 106.97332 * 26.51347 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 0.97000 * 119.99567 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47133 * 300.00517 * 14 13 11 33 33 H 1.09008 * 109.47066 * 60.00321 * 14 13 11 34 34 H 0.96691 * 116.99969 * 179.97438 * 19 17 15 35 35 H 1.09002 * 110.48752 * 339.60717 * 22 20 15 36 36 H 1.09003 * 110.48433 * 102.10770 * 22 20 15 37 37 H 1.08996 * 109.88370 * 117.39470 * 23 22 20 38 38 H 1.09006 * 109.87993 * 238.39785 * 23 22 20 39 39 H 1.08997 * 110.61478 * 201.43707 * 25 24 23 40 40 H 1.08997 * 110.61690 * 78.44554 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 8 0.2788 -4.9671 -0.0149 13 7 2.1653 -6.1344 -0.0212 14 6 1.4329 -7.4031 -0.0258 15 6 2.4270 -8.5660 -0.0310 16 1 3.1106 -8.4559 -0.8727 17 6 3.2106 -8.5627 1.2564 18 8 2.9961 -7.7168 2.0919 19 8 4.1467 -9.4997 1.4746 20 6 1.6660 -9.8870 -0.1614 21 1 0.9296 -9.9899 0.6356 22 6 2.6422 -11.0885 -0.1695 23 6 2.0722 -12.0311 -1.2469 24 8 0.8666 -11.4288 -1.7471 25 6 0.9958 -10.0039 -1.5540 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 3.1354 -6.1344 -0.0215 32 1 0.8070 -7.4645 0.8646 33 1 0.8053 -7.4571 -0.9155 34 1 4.6234 -9.4566 2.3147 35 1 3.6464 -10.7624 -0.4405 36 1 2.6512 -11.5792 0.8038 37 1 2.7923 -12.1468 -2.0569 38 1 1.8488 -13.0036 -0.8080 39 1 0.0158 -9.5268 -1.5497 40 1 1.6323 -9.5684 -2.3242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:32 Heat of formation + Delta-G solvation = -221.430815 kcal Electronic energy + Delta-G solvation = -22558.101997 eV Core-core repulsion = 18949.969592 eV Total energy + Delta-G solvation = -3608.132405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86266 -40.49640 -40.13512 -37.32445 -36.51530 -35.55057 -34.40814 -32.97807 -31.20827 -29.16953 -27.81501 -26.04382 -23.64623 -23.40881 -22.42594 -21.64863 -20.80684 -19.24717 -18.80718 -18.00784 -17.58637 -17.52104 -16.96907 -16.70507 -16.46206 -16.32491 -16.07824 -15.88543 -14.83754 -14.81192 -14.55517 -14.18596 -14.06351 -13.80621 -13.60684 -13.23123 -12.95933 -12.82595 -12.69652 -12.53618 -12.44216 -12.24502 -12.03384 -11.92851 -11.68000 -11.63798 -11.39793 -11.28585 -10.74381 -10.61684 -10.58006 -10.08873 -8.18096 -6.32124 1.15151 1.41884 1.43642 1.56911 1.71918 2.00016 2.19199 2.44185 2.97154 3.14816 3.20638 3.63332 3.76615 3.88454 4.03479 4.09653 4.21512 4.30677 4.39408 4.42742 4.50031 4.54712 4.66132 4.74058 4.83697 4.91077 4.93242 5.07966 5.14091 5.20973 5.41064 5.51004 5.62626 5.63507 5.85612 5.93496 6.17848 6.54953 6.86408 6.98961 7.32845 7.38145 8.94902 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.002949 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.085982 B = 9491.114040 C =10054.826820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.120 4.120 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.714 5.714 14 C 0.129 3.871 15 C -0.069 4.069 16 H 0.149 0.851 17 C 0.486 3.514 18 O -0.541 6.541 19 O -0.499 6.499 20 C -0.109 4.109 21 H 0.087 0.913 22 C -0.137 4.137 23 C 0.039 3.961 24 O -0.402 6.402 25 C 0.049 3.951 26 H 0.263 0.737 27 H -0.021 1.021 28 H -0.014 1.014 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.411 0.589 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.427 0.573 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.755 -27.007 -1.455 29.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.366 5.366 14 C 0.005 3.995 15 C -0.088 4.088 16 H 0.167 0.833 17 C 0.329 3.671 18 O -0.430 6.430 19 O -0.313 6.313 20 C -0.128 4.128 21 H 0.106 0.894 22 C -0.174 4.174 23 C -0.038 4.038 24 O -0.322 6.322 25 C -0.027 4.027 26 H 0.072 0.928 27 H -0.002 1.002 28 H 0.004 0.996 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.247 0.753 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.289 0.711 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.325 -26.844 -1.680 29.184 hybrid contribution 0.536 1.172 0.937 1.593 sum 11.861 -25.673 -0.743 28.290 Atomic orbital electron populations 1.70190 1.08317 1.27749 1.51529 1.26161 0.95758 1.04003 0.94649 0.85252 0.79268 0.78002 0.77579 1.17621 1.20453 1.20704 1.21747 0.93979 0.91626 1.50682 0.90656 1.18689 0.93704 0.92452 0.94715 1.21628 0.99362 0.90295 1.04657 1.21250 0.87794 0.86691 0.74102 1.90653 1.16560 1.88378 1.51198 1.45742 1.10576 1.04701 1.75616 1.21284 0.94167 0.81333 1.02715 1.21294 0.96847 0.95526 0.95110 0.83314 1.23331 0.77810 0.77565 0.88418 1.90842 1.66178 1.38758 1.47240 1.84509 1.48851 1.51494 1.46424 1.22601 0.98126 0.92158 0.99911 0.89420 1.22994 0.99736 0.94162 1.00540 1.23368 0.86513 0.97517 0.96361 1.88887 1.39940 1.19614 1.83759 1.23746 1.02130 0.82219 0.94655 0.92844 1.00230 0.99596 0.87400 0.88477 0.75260 0.93037 0.89439 0.71143 0.88041 0.89511 0.91066 0.89186 0.88743 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.37 13.29 21.45 0.28 -60.08 16 2 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 3 Si 0.98 44.89 29.54 68.60 2.03 46.92 16 4 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.40 4.26 29.85 0.13 2.53 16 10 C -0.12 -4.97 5.64 29.85 0.17 -4.80 16 11 C 0.51 20.46 7.83 87.66 0.69 21.15 16 12 O -0.59 -29.50 15.98 -3.04 -0.05 -29.55 16 13 N -0.71 -19.55 4.81 -463.08 -2.23 -21.77 16 14 C 0.13 2.93 4.55 86.38 0.39 3.32 16 15 C -0.07 -0.91 1.79 -11.54 -0.02 -0.93 16 16 H 0.15 1.14 8.09 -2.39 -0.02 1.12 16 17 C 0.49 7.54 7.26 71.24 0.52 8.06 16 18 O -0.54 -13.67 16.05 21.98 0.35 -13.31 16 19 O -0.50 -4.00 11.10 -51.44 -0.57 -4.57 16 20 C -0.11 -1.30 2.65 -9.49 -0.03 -1.32 16 21 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 22 C -0.14 -1.15 5.09 31.58 0.16 -0.99 16 23 C 0.04 0.41 7.70 72.35 0.56 0.97 16 24 O -0.40 -6.94 11.52 -148.98 -1.72 -8.65 16 25 C 0.05 0.66 6.36 72.66 0.46 1.13 16 26 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 27 H -0.02 -1.35 8.10 -2.38 -0.02 -1.37 16 28 H -0.01 -0.92 8.10 -2.39 -0.02 -0.94 16 29 H 0.11 3.83 8.14 -2.38 -0.02 3.81 16 30 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 31 H 0.41 8.63 8.15 -92.71 -0.76 7.87 16 32 H 0.05 1.46 7.95 -2.38 -0.02 1.44 16 33 H 0.09 1.93 7.28 -2.38 -0.02 1.91 16 34 H 0.43 0.69 9.10 -74.06 -0.67 0.01 16 35 H 0.10 0.62 7.00 -2.39 -0.02 0.61 16 36 H 0.09 0.67 8.13 -2.39 -0.02 0.65 16 37 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.09 1.38 7.97 -2.39 -0.02 1.36 16 40 H 0.08 0.87 8.01 -2.39 -0.02 0.85 16 Total: -1.00 -85.96 335.93 1.46 -84.50 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -0.37 Total: 8.69 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 3.72 Total: -2.17 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -1.94 Total: -81.85 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -1.98 Total: -56.09 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -85.96 1.46 -84.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.927 kcal (2) G-P(sol) polarization free energy of solvation -85.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds