Wall clock time and date at job start Tue Mar 31 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00078 * 2 1 4 4 H 1.48506 * 109.46972 * 269.99912 * 3 2 1 5 5 H 1.48492 * 109.47150 * 29.99797 * 3 2 1 6 6 H 1.48497 * 109.47146 * 150.00503 * 3 2 1 7 7 C 1.37882 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99771 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46821 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46821 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00505 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00072 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00209 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47058 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.47121 * 55.00233 * 15 14 13 17 17 C 1.50700 * 109.47029 * 294.99814 * 15 14 13 18 18 O 1.20822 * 119.99780 * 239.99903 * 17 15 14 19 19 O 1.34233 * 119.99729 * 60.00306 * 17 15 14 20 20 C 1.52997 * 109.46825 * 175.00166 * 15 14 13 21 21 H 1.08999 * 110.91189 * 62.12995 * 20 15 14 22 22 C 1.55312 * 110.84666 * 185.71562 * 20 15 14 23 23 C 1.54951 * 100.94225 * 152.32045 * 22 20 15 24 24 O 1.43641 * 105.13632 * 323.55537 * 23 22 20 25 25 C 1.43245 * 109.97171 * 24.42677 * 24 23 22 26 26 H 0.97001 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47185 * 59.99828 * 9 7 2 28 28 H 1.09003 * 109.46940 * 299.99895 * 9 7 2 29 29 H 1.08993 * 109.47548 * 60.00089 * 10 9 7 30 30 H 1.09003 * 109.47102 * 299.99581 * 10 9 7 31 31 H 0.97004 * 119.99708 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47021 * 60.00354 * 14 13 11 33 33 H 1.08994 * 109.47022 * 299.99899 * 14 13 11 34 34 H 0.96704 * 116.99607 * 179.97438 * 19 17 15 35 35 H 1.09000 * 111.12606 * 34.40076 * 22 20 15 36 36 H 1.09000 * 111.15931 * 270.25397 * 22 20 15 37 37 H 1.08996 * 110.30651 * 204.63910 * 23 22 20 38 38 H 1.09000 * 110.39126 * 82.51038 * 23 22 20 39 39 H 1.08996 * 109.82744 * 117.80426 * 25 24 23 40 40 H 1.09002 * 109.82692 * 238.77298 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0010 13 7 2.1656 -6.1344 -0.0003 14 6 1.4331 -7.4031 0.0009 15 6 2.4274 -8.5661 0.0007 16 1 3.1121 -8.4588 0.8420 17 6 3.2092 -8.5583 -1.2875 18 8 3.1628 -9.5119 -2.0281 19 8 3.9573 -7.4921 -1.6122 20 6 1.6666 -9.8874 0.1277 21 1 1.0012 -10.0364 -0.7227 22 6 2.6508 -11.0798 0.2750 23 6 1.7814 -12.0814 1.0764 24 8 1.0118 -11.2714 1.9791 25 6 0.8820 -9.9442 1.4560 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 3.1356 -6.1344 -0.0014 32 1 0.8055 -7.4611 -0.8885 33 1 0.8075 -7.4606 0.8915 34 1 4.4412 -7.5336 -2.4484 35 1 3.5373 -10.7902 0.8392 36 1 2.9234 -11.4876 -0.6984 37 1 2.4154 -12.7710 1.6336 38 1 1.1215 -12.6324 0.4062 39 1 -0.1690 -9.7195 1.2745 40 1 1.2982 -9.2260 2.1624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:34 Heat of formation + Delta-G solvation = -193.539234 kcal Electronic energy + Delta-G solvation = -22580.304389 eV Core-core repulsion = 18973.381453 eV Total energy + Delta-G solvation = -3606.922936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14523 -39.50902 -39.07218 -36.51859 -35.76145 -33.45317 -33.25394 -31.15404 -30.46978 -28.46964 -26.13692 -24.64358 -22.84762 -22.41124 -21.36369 -20.55766 -19.59627 -18.42858 -17.75141 -16.90833 -16.56006 -16.30713 -16.02449 -15.49924 -15.28025 -15.07854 -14.99030 -14.41074 -14.12526 -13.61175 -13.56755 -13.22411 -12.77414 -12.49090 -12.19799 -12.04507 -11.95095 -11.82568 -11.63654 -11.42826 -11.20931 -11.15352 -10.93260 -10.75912 -10.59811 -9.95693 -9.86009 -9.67363 -9.19896 -9.03097 -8.86439 -8.32132 -5.96261 -4.00631 1.82028 2.57512 3.22369 3.29978 3.33073 3.39425 3.41937 3.55306 3.95790 4.19032 4.38708 4.46995 4.48117 4.66890 4.78473 4.85205 4.92893 5.05719 5.34538 5.38718 5.40607 5.42526 5.45108 5.51472 5.58826 5.74635 5.77608 6.16824 6.23090 6.25059 6.60757 6.64186 6.89516 7.52128 7.74271 7.86242 7.86659 8.07121 8.38503 8.75083 9.08043 9.62908 11.14696 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031257 B = 0.002980 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.583566 B = 9395.148196 C = 9978.021563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.535 6.535 13 N -0.742 5.742 14 C 0.125 3.875 15 C -0.082 4.082 16 H 0.120 0.880 17 C 0.487 3.513 18 O -0.511 6.511 19 O -0.509 6.509 20 C -0.105 4.105 21 H 0.100 0.900 22 C -0.150 4.150 23 C 0.051 3.949 24 O -0.383 6.383 25 C 0.055 3.945 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.403 0.597 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.766 -23.152 -0.019 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.410 6.410 13 N -0.398 5.398 14 C 0.001 3.999 15 C -0.102 4.102 16 H 0.138 0.862 17 C 0.328 3.672 18 O -0.399 6.399 19 O -0.322 6.322 20 C -0.125 4.125 21 H 0.119 0.881 22 C -0.188 4.188 23 C -0.026 4.026 24 O -0.302 6.302 25 C -0.022 4.022 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.239 0.761 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.274 0.726 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.392 -23.328 0.342 24.473 hybrid contribution 1.389 0.950 -0.887 1.902 sum 8.780 -22.378 -0.545 24.045 Atomic orbital electron populations 1.69998 1.06057 1.26580 1.50207 1.25030 0.94827 0.99233 0.95326 0.86591 0.79772 0.83527 0.78049 1.20698 1.21230 1.19887 1.21225 0.92931 0.91016 1.51359 0.92597 1.18903 0.93190 0.89393 0.98615 1.21854 1.00695 0.91745 1.02564 1.21586 0.88616 0.85592 0.74256 1.90677 1.14489 1.87644 1.48203 1.46244 1.10469 1.04906 1.78226 1.21214 0.93314 0.81639 1.03743 1.21367 0.97476 0.96970 0.94350 0.86223 1.23201 0.76748 0.79437 0.87770 1.90711 1.61839 1.35582 1.51737 1.84488 1.58663 1.43480 1.45531 1.22565 0.97532 0.92439 0.99926 0.88129 1.23373 0.98152 0.95089 1.02135 1.23386 0.93227 0.93804 0.92161 1.88430 1.74412 1.21574 1.45796 1.23253 1.00408 0.85115 0.93423 0.92950 0.95861 0.95806 0.90195 0.90170 0.76077 0.91067 0.89801 0.72648 0.90442 0.88655 0.89628 0.91939 0.90436 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 11 C 0.51 9.45 7.83 -10.98 -0.09 9.37 16 12 O -0.53 -12.26 15.98 5.56 0.09 -12.17 16 13 N -0.74 -9.60 5.06 -60.29 -0.31 -9.90 16 14 C 0.13 1.37 4.93 -4.04 -0.02 1.35 16 15 C -0.08 -0.66 1.74 -91.77 -0.16 -0.82 16 16 H 0.12 0.76 8.12 -51.93 -0.42 0.34 16 17 C 0.49 4.36 7.41 36.01 0.27 4.63 16 18 O -0.51 -5.70 15.39 -18.75 -0.29 -5.99 16 19 O -0.51 -3.76 11.42 -39.27 -0.45 -4.21 16 20 C -0.11 -0.83 2.09 -88.67 -0.19 -1.01 16 21 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 22 C -0.15 -1.08 5.78 -24.48 -0.14 -1.22 16 23 C 0.05 0.38 7.78 38.19 0.30 0.67 16 24 O -0.38 -3.84 11.36 -35.23 -0.40 -4.24 16 25 C 0.05 0.46 6.36 37.88 0.24 0.70 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.40 4.24 6.94 -40.82 -0.28 3.96 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.92 6.98 -51.93 -0.36 0.55 16 34 H 0.41 1.57 9.10 45.56 0.41 1.98 16 35 H 0.08 0.51 8.03 -51.93 -0.42 0.09 16 36 H 0.09 0.74 7.28 -51.93 -0.38 0.36 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -36.31 334.90 -6.24 -42.55 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.18 Total: 0.76 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.47 Total: -1.76 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.43 Total: -36.52 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -1.05 Total: -26.60 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.31 -6.24 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.988 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds