Wall clock time and date at job start Tue Mar 31 2020 05:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99458 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00392 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47397 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47504 * 305.00263 * 15 14 13 17 17 C 1.50706 * 109.46758 * 65.00552 * 15 14 13 18 18 O 1.20821 * 120.00159 * 359.97438 * 17 15 14 19 19 O 1.34233 * 119.99775 * 179.97438 * 17 15 14 20 20 C 1.53007 * 109.47244 * 184.99926 * 15 14 13 21 21 H 1.09000 * 110.45621 * 297.40021 * 20 15 14 22 22 C 1.54514 * 110.50885 * 60.00576 * 20 15 14 23 23 C 1.54471 * 104.06105 * 118.64171 * 22 20 15 24 24 O 1.44424 * 104.80799 * 23.98037 * 23 22 20 25 25 C 1.44431 * 105.27142 * 319.48535 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 0.97000 * 119.99567 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47133 * 300.00517 * 14 13 11 33 33 H 1.09008 * 109.47066 * 60.00321 * 14 13 11 34 34 H 0.96691 * 116.99969 * 179.97438 * 19 17 15 35 35 H 1.09003 * 110.50711 * 237.28965 * 22 20 15 36 36 H 1.09003 * 110.51023 * 359.97438 * 22 20 15 37 37 H 1.09006 * 110.36714 * 142.81199 * 23 22 20 38 38 H 1.09002 * 110.37448 * 265.14411 * 23 22 20 39 39 H 1.08993 * 110.37005 * 281.68024 * 25 24 23 40 40 H 1.09002 * 110.36796 * 159.33975 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 8 0.2788 -4.9671 -0.0149 13 7 2.1653 -6.1344 -0.0212 14 6 1.4329 -7.4031 -0.0258 15 6 2.4270 -8.5660 -0.0310 16 1 3.1106 -8.4559 -0.8727 17 6 3.2106 -8.5627 1.2564 18 8 2.9961 -7.7168 2.0919 19 8 4.1467 -9.4997 1.4746 20 6 1.6660 -9.8870 -0.1614 21 1 1.0105 -10.0353 0.6967 22 6 0.8532 -9.9160 -1.4752 23 6 1.4441 -11.1108 -2.2558 24 8 2.0202 -11.9646 -1.2433 25 6 2.6519 -11.0677 -0.3039 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 3.1354 -6.1344 -0.0215 32 1 0.8070 -7.4645 0.8646 33 1 0.8053 -7.4571 -0.9155 34 1 4.6234 -9.4566 2.3147 35 1 -0.2039 -10.0812 -1.2666 36 1 0.9931 -8.9891 -2.0314 37 1 0.6570 -11.6387 -2.7943 38 1 2.2143 -10.7689 -2.9471 39 1 3.6073 -10.7192 -0.6958 40 1 2.7926 -11.5625 0.6571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:37 Heat of formation + Delta-G solvation = -190.994967 kcal Electronic energy + Delta-G solvation = -22599.203799 eV Core-core repulsion = 18992.391191 eV Total energy + Delta-G solvation = -3606.812608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14278 -39.54022 -39.01018 -36.61188 -35.57750 -33.42802 -33.30467 -31.01703 -30.37255 -28.52731 -26.01758 -24.77368 -23.19559 -21.98122 -21.34996 -20.64386 -19.47827 -18.58237 -17.52312 -16.88980 -16.79131 -16.18914 -15.74130 -15.49276 -15.42579 -15.26597 -14.92800 -14.38716 -14.02362 -13.73665 -13.25800 -13.10954 -12.91318 -12.44372 -12.20517 -12.13140 -11.84107 -11.80399 -11.61928 -11.41696 -11.12926 -11.07507 -10.91069 -10.70495 -10.57978 -10.17001 -9.92629 -9.64225 -9.16218 -8.99544 -8.78132 -8.29818 -5.94060 -3.98216 1.84227 2.59652 3.28819 3.34515 3.38024 3.41162 3.44202 3.58472 3.97152 4.23476 4.27629 4.49466 4.58483 4.66514 4.71328 4.84819 4.97882 5.04296 5.30069 5.37125 5.40808 5.42370 5.47080 5.55706 5.61860 5.69453 5.83413 6.16110 6.25565 6.29082 6.39481 6.66889 6.92258 7.55006 7.76697 7.86387 7.89523 8.09803 8.41237 8.79898 9.10387 9.65026 11.16948 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031026 B = 0.002975 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.250392 B = 9408.245266 C = 9942.257017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.739 5.739 14 C 0.133 3.867 15 C -0.083 4.083 16 H 0.118 0.882 17 C 0.474 3.526 18 O -0.491 6.491 19 O -0.517 6.517 20 C -0.112 4.112 21 H 0.094 0.906 22 C -0.155 4.155 23 C 0.044 3.956 24 O -0.376 6.376 25 C 0.056 3.944 26 H 0.261 0.739 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.394 0.606 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.411 0.589 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.190 -25.075 -2.027 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.302 3.698 12 O -0.410 6.410 13 N -0.393 5.393 14 C 0.009 3.991 15 C -0.103 4.103 16 H 0.136 0.864 17 C 0.315 3.685 18 O -0.376 6.376 19 O -0.330 6.330 20 C -0.132 4.132 21 H 0.112 0.888 22 C -0.192 4.192 23 C -0.033 4.033 24 O -0.295 6.295 25 C -0.021 4.021 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.228 0.772 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.270 0.730 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.837 -24.951 -2.143 25.959 hybrid contribution 1.301 1.208 0.640 1.887 sum 8.137 -23.743 -1.502 25.143 Atomic orbital electron populations 1.70002 1.06048 1.26545 1.50260 1.25030 0.94833 0.99221 0.95347 0.86586 0.79781 0.83519 0.78028 1.20692 1.21226 1.19902 1.21231 0.92923 0.91040 1.51290 0.92633 1.18896 0.93177 0.89348 0.98618 1.21859 1.00737 0.91913 1.02448 1.21506 0.88605 0.85492 0.74186 1.90666 1.14429 1.87611 1.48330 1.46068 1.09757 1.05309 1.78177 1.21187 0.93201 0.81201 1.03550 1.21440 0.97320 0.97369 0.94168 0.86437 1.23331 0.77980 0.78181 0.89013 1.90839 1.64527 1.36586 1.45671 1.84528 1.49849 1.53211 1.45393 1.22479 0.97591 0.92652 1.00438 0.88763 1.23122 1.00972 1.00046 0.95071 1.23452 0.97553 0.90959 0.91337 1.89148 1.73194 1.30012 1.37151 1.23498 0.94967 0.89401 0.94221 0.92970 0.95803 0.95819 0.90321 0.90232 0.77226 0.90727 0.89895 0.72975 0.89660 0.89354 0.88873 0.92004 0.91272 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.71 5.64 -27.89 -0.16 -2.87 16 11 C 0.51 10.12 7.83 -10.99 -0.09 10.04 16 12 O -0.54 -12.80 15.98 5.55 0.09 -12.71 16 13 N -0.74 -10.55 4.81 -60.30 -0.29 -10.84 16 14 C 0.13 1.56 4.45 -4.05 -0.02 1.54 16 15 C -0.08 -0.66 1.70 -91.77 -0.16 -0.82 16 16 H 0.12 0.72 8.08 -51.93 -0.42 0.30 16 17 C 0.47 4.28 7.28 36.01 0.26 4.54 16 18 O -0.49 -6.50 16.05 -18.75 -0.30 -6.80 16 19 O -0.52 -3.05 11.55 -39.26 -0.45 -3.50 16 20 C -0.11 -0.79 2.67 -89.05 -0.24 -1.02 16 21 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.15 -1.00 6.13 -25.16 -0.15 -1.16 16 23 C 0.04 0.29 7.63 37.93 0.29 0.58 16 24 O -0.38 -3.38 11.65 -35.23 -0.41 -3.79 16 25 C 0.06 0.39 5.70 37.93 0.22 0.61 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.39 4.65 8.15 -40.82 -0.33 4.32 16 32 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 33 H 0.08 0.94 6.38 -51.92 -0.33 0.61 16 34 H 0.41 1.03 9.10 45.56 0.41 1.45 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.55 6.46 -51.93 -0.34 0.21 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.44 7.54 -51.93 -0.39 0.05 16 40 H 0.10 0.63 8.00 -51.93 -0.42 0.22 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -37.66 334.83 -6.32 -43.98 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.14 Total: 0.30 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.57 Total: -1.55 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.45 Total: -37.85 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.08 Total: -26.80 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.66 -6.32 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.013 kcal (2) G-P(sol) polarization free energy of solvation -37.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds