Wall clock time and date at job start Tue Mar 31 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99458 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00392 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47397 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47504 * 305.00263 * 15 14 13 17 17 C 1.50706 * 109.46758 * 65.00552 * 15 14 13 18 18 O 1.20821 * 120.00159 * 359.97438 * 17 15 14 19 19 O 1.34233 * 119.99775 * 179.97438 * 17 15 14 20 20 C 1.53007 * 109.47244 * 184.99926 * 15 14 13 21 21 H 1.09000 * 110.45621 * 297.40021 * 20 15 14 22 22 C 1.54514 * 110.50885 * 60.00576 * 20 15 14 23 23 C 1.54471 * 104.06105 * 118.64171 * 22 20 15 24 24 O 1.44424 * 104.80799 * 23.98037 * 23 22 20 25 25 C 1.44431 * 105.27142 * 319.48535 * 24 23 22 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 0.97000 * 119.99567 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47133 * 300.00517 * 14 13 11 33 33 H 1.09008 * 109.47066 * 60.00321 * 14 13 11 34 34 H 0.96691 * 116.99969 * 179.97438 * 19 17 15 35 35 H 1.09003 * 110.50711 * 237.28965 * 22 20 15 36 36 H 1.09003 * 110.51023 * 359.97438 * 22 20 15 37 37 H 1.09006 * 110.36714 * 142.81199 * 23 22 20 38 38 H 1.09002 * 110.37448 * 265.14411 * 23 22 20 39 39 H 1.08993 * 110.37005 * 281.68024 * 25 24 23 40 40 H 1.09002 * 110.36796 * 159.33975 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 8 0.2788 -4.9671 -0.0149 13 7 2.1653 -6.1344 -0.0212 14 6 1.4329 -7.4031 -0.0258 15 6 2.4270 -8.5660 -0.0310 16 1 3.1106 -8.4559 -0.8727 17 6 3.2106 -8.5627 1.2564 18 8 2.9961 -7.7168 2.0919 19 8 4.1467 -9.4997 1.4746 20 6 1.6660 -9.8870 -0.1614 21 1 1.0105 -10.0353 0.6967 22 6 0.8532 -9.9160 -1.4752 23 6 1.4441 -11.1108 -2.2558 24 8 2.0202 -11.9646 -1.2433 25 6 2.6519 -11.0677 -0.3039 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 3.1354 -6.1344 -0.0215 32 1 0.8070 -7.4645 0.8646 33 1 0.8053 -7.4571 -0.9155 34 1 4.6234 -9.4566 2.3147 35 1 -0.2039 -10.0812 -1.2666 36 1 0.9931 -8.9891 -2.0314 37 1 0.6570 -11.6387 -2.7943 38 1 2.2143 -10.7689 -2.9471 39 1 3.6073 -10.7192 -0.6958 40 1 2.7926 -11.5625 0.6571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:36 Heat of formation + Delta-G solvation = -220.600281 kcal Electronic energy + Delta-G solvation = -22600.487581 eV Core-core repulsion = 18992.391191 eV Total energy + Delta-G solvation = -3608.096391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.89432 -40.50139 -40.13853 -37.35419 -36.52656 -35.55216 -34.39460 -32.95927 -31.03411 -29.43437 -27.69545 -25.90874 -24.07894 -23.19734 -22.43313 -21.59145 -20.77122 -19.27115 -18.80116 -18.18597 -17.61550 -17.43528 -16.88172 -16.62493 -16.44494 -16.31091 -16.06905 -15.99733 -14.87970 -14.81331 -14.51883 -14.18477 -14.18168 -13.70650 -13.51754 -13.23445 -13.05429 -12.81085 -12.68093 -12.51130 -12.48146 -12.21483 -12.06279 -11.92264 -11.64187 -11.62386 -11.44156 -11.30918 -10.76366 -10.69939 -10.57037 -10.08216 -8.18078 -6.32187 1.13279 1.41776 1.44846 1.55779 1.71319 1.99148 2.18714 2.44188 3.02190 3.14723 3.25293 3.59861 3.67693 3.99771 4.02491 4.10050 4.16168 4.30540 4.39296 4.42682 4.49527 4.54717 4.66075 4.72254 4.87150 4.92888 4.96102 5.07598 5.08966 5.12593 5.40624 5.50586 5.60730 5.63266 5.85326 5.87926 6.17708 6.54274 6.86052 6.97233 7.32206 7.38026 8.94682 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031026 B = 0.002975 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.250392 B = 9408.245266 C = 9942.257017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.588 6.588 13 N -0.714 5.714 14 C 0.130 3.870 15 C -0.071 4.071 16 H 0.147 0.853 17 C 0.484 3.516 18 O -0.539 6.539 19 O -0.502 6.502 20 C -0.107 4.107 21 H 0.087 0.913 22 C -0.155 4.155 23 C 0.041 3.959 24 O -0.400 6.400 25 C 0.058 3.942 26 H 0.263 0.737 27 H -0.021 1.021 28 H -0.014 1.014 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.411 0.589 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.429 0.571 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.047 -25.802 -2.720 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.160 4.160 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.367 5.367 14 C 0.007 3.993 15 C -0.091 4.091 16 H 0.165 0.835 17 C 0.327 3.673 18 O -0.429 6.429 19 O -0.316 6.316 20 C -0.127 4.127 21 H 0.106 0.894 22 C -0.192 4.192 23 C -0.035 4.035 24 O -0.319 6.319 25 C -0.018 4.018 26 H 0.072 0.928 27 H -0.002 1.002 28 H 0.004 0.996 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.247 0.753 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.291 0.709 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.778 -25.754 -2.837 27.693 hybrid contribution 0.417 1.308 0.870 1.626 sum 10.195 -24.445 -1.967 26.559 Atomic orbital electron populations 1.70182 1.08307 1.27816 1.51442 1.26155 0.95755 1.03980 0.94622 0.85303 0.78596 0.77634 0.78596 1.19497 1.21186 1.18037 1.21718 0.93973 0.91650 1.50838 0.90681 1.18682 0.93689 0.92416 0.94721 1.21631 0.99378 0.90326 1.04642 1.21240 0.87790 0.86667 0.74101 1.90651 1.16536 1.88376 1.51210 1.45758 1.10578 1.04740 1.75610 1.21302 0.94065 0.81158 1.02801 1.21345 0.96881 0.95948 0.94889 0.83505 1.23403 0.77800 0.77622 0.88523 1.90841 1.66100 1.38683 1.47226 1.84482 1.48907 1.51640 1.46588 1.22420 0.97600 0.92095 1.00557 0.89419 1.23130 1.00847 1.00400 0.94831 1.23583 0.98131 0.90677 0.91102 1.89130 1.73590 1.31218 1.37957 1.23541 0.95097 0.88937 0.94256 0.92835 1.00228 0.99572 0.87401 0.88520 0.75300 0.93134 0.89160 0.70927 0.89862 0.88817 0.88196 0.90721 0.90090 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.19 13.29 21.45 0.28 -59.90 16 2 C -0.01 -0.46 5.46 84.66 0.46 0.01 16 3 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.42 4.26 29.85 0.13 2.55 16 10 C -0.12 -4.98 5.64 29.85 0.17 -4.81 16 11 C 0.51 20.40 7.83 87.66 0.69 21.08 16 12 O -0.59 -29.33 15.98 -3.04 -0.05 -29.38 16 13 N -0.71 -19.53 4.81 -463.08 -2.23 -21.76 16 14 C 0.13 2.95 4.45 86.38 0.38 3.34 16 15 C -0.07 -0.97 1.70 -11.54 -0.02 -0.99 16 16 H 0.15 1.21 8.08 -2.39 -0.02 1.19 16 17 C 0.48 7.72 7.28 71.24 0.52 8.24 16 18 O -0.54 -13.74 16.05 21.98 0.35 -13.39 16 19 O -0.50 -4.44 11.55 -51.44 -0.59 -5.03 16 20 C -0.11 -1.30 2.67 -9.77 -0.03 -1.33 16 21 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 22 C -0.15 -1.75 6.13 31.61 0.19 -1.55 16 23 C 0.04 0.46 7.63 72.48 0.55 1.01 16 24 O -0.40 -6.39 11.65 -148.98 -1.74 -8.13 16 25 C 0.06 0.68 5.70 72.48 0.41 1.09 16 26 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 27 H -0.02 -1.34 8.10 -2.38 -0.02 -1.36 16 28 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 29 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 30 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 31 H 0.41 8.66 8.15 -92.71 -0.76 7.91 16 32 H 0.05 1.43 7.95 -2.38 -0.02 1.41 16 33 H 0.09 1.96 6.38 -2.38 -0.02 1.95 16 34 H 0.43 0.93 9.10 -74.06 -0.67 0.26 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.97 6.46 -2.39 -0.02 0.95 16 37 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.76 7.54 -2.39 -0.02 0.74 16 40 H 0.10 1.08 8.00 -2.39 -0.02 1.06 16 Total: -1.00 -85.25 334.83 1.39 -83.86 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -0.36 Total: 9.56 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 3.70 Total: -2.62 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.94 Total: -81.66 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -2.03 Total: -55.93 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -85.25 1.39 -83.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.743 kcal (2) G-P(sol) polarization free energy of solvation -85.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds