Wall clock time and date at job start Tue Mar 31 2020 05:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86811 * 119.99734 * 2 1 4 4 H 1.48501 * 109.46955 * 269.99787 * 3 2 1 5 5 H 1.48503 * 109.46788 * 29.99762 * 3 2 1 6 6 H 1.48498 * 109.46843 * 149.99866 * 3 2 1 7 7 C 1.37869 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99590 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00372 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46849 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00087 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99846 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99998 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47243 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47120 * 54.99832 * 15 14 13 17 17 C 1.50693 * 109.46923 * 294.99873 * 15 14 13 18 18 O 1.20825 * 120.00136 * 239.99881 * 17 15 14 19 19 O 1.34235 * 120.00200 * 60.00022 * 17 15 14 20 20 C 1.53002 * 109.47079 * 174.99871 * 15 14 13 21 21 H 1.09002 * 110.80543 * 60.70118 * 20 15 14 22 22 C 1.54813 * 110.90937 * 297.07155 * 20 15 14 23 23 C 1.54097 * 104.18879 * 220.88659 * 22 20 15 24 24 O 1.43744 * 107.29232 * 357.97414 * 23 22 20 25 25 C 1.44377 * 106.98032 * 26.50972 * 24 23 22 26 26 H 0.97005 * 120.00138 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46675 * 60.00070 * 9 7 2 28 28 H 1.08996 * 109.47129 * 300.00234 * 9 7 2 29 29 H 1.08999 * 109.46651 * 60.00310 * 10 9 7 30 30 H 1.08996 * 109.47052 * 300.00479 * 10 9 7 31 31 H 0.96997 * 119.99833 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47551 * 59.99508 * 14 13 11 33 33 H 1.09006 * 109.47137 * 299.99934 * 14 13 11 34 34 H 0.96698 * 117.00349 * 179.97438 * 19 17 15 35 35 H 1.09004 * 110.48713 * 339.56712 * 22 20 15 36 36 H 1.09002 * 110.48733 * 102.20727 * 22 20 15 37 37 H 1.09005 * 109.87484 * 117.39532 * 23 22 20 38 38 H 1.08995 * 109.87930 * 238.39512 * 23 22 20 39 39 H 1.08996 * 110.62453 * 201.44103 * 25 24 23 40 40 H 1.09000 * 110.61716 * 78.44093 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5286 -2.6363 0.0035 12 8 6.1349 -1.5859 0.0030 13 7 6.2025 -3.8035 0.0041 14 6 7.6675 -3.8035 0.0059 15 6 8.1776 -5.2460 0.0069 16 1 7.7440 -5.7853 -0.8352 17 6 7.7774 -5.9193 1.2943 18 8 8.6249 -6.3558 2.0366 19 8 6.4794 -6.0341 1.6165 20 6 9.7026 -5.2477 -0.1170 21 1 10.1598 -4.7237 0.7223 22 6 10.1481 -4.6283 -1.4640 23 6 11.3028 -5.5346 -1.9330 24 8 11.5073 -6.5278 -0.9141 25 6 10.2475 -6.6944 -0.2289 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6798 0.8912 28 1 3.8752 -0.6802 -0.8888 29 1 3.6586 -3.1508 -0.8875 30 1 3.6579 -3.1497 0.8924 31 1 5.7175 -4.6436 0.0042 32 1 8.0298 -3.2897 0.8963 33 1 8.0319 -3.2895 -0.8836 34 1 6.2717 -6.4739 2.4522 35 1 9.3295 -4.6502 -2.1834 36 1 10.5003 -3.6073 -1.3165 37 1 11.0364 -6.0176 -2.8732 38 1 12.2087 -4.9429 -2.0641 39 1 10.4026 -7.1237 0.7609 40 1 9.5705 -7.3152 -0.8158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601066275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:39 Heat of formation + Delta-G solvation = -191.010503 kcal Electronic energy + Delta-G solvation = -22642.598262 eV Core-core repulsion = 19035.784981 eV Total energy + Delta-G solvation = -3606.813282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18943 -39.52077 -39.21871 -36.54456 -35.88550 -33.49298 -33.32809 -31.34084 -30.48587 -28.73793 -26.34273 -24.69739 -23.12862 -22.26331 -21.16343 -20.55383 -19.64975 -18.44037 -17.72286 -17.23526 -16.58585 -16.43126 -16.13214 -15.65825 -15.33530 -15.24452 -15.19529 -14.19441 -14.10302 -13.85288 -13.48056 -13.22615 -12.79422 -12.55568 -12.50785 -12.22917 -12.06916 -11.90771 -11.74134 -11.47671 -11.39336 -11.11796 -10.97449 -10.78918 -10.18109 -10.06411 -10.06133 -9.79990 -9.29285 -9.18663 -8.97623 -8.51971 -6.04203 -4.03041 1.77581 2.53267 3.07326 3.23312 3.36754 3.43524 3.54212 3.55197 4.04219 4.14796 4.22540 4.49731 4.56311 4.61072 4.65775 4.80795 4.90268 5.01399 5.28140 5.31294 5.32538 5.37550 5.38855 5.44273 5.60475 5.63769 5.71073 6.06807 6.08690 6.13953 6.46233 6.50475 6.68332 7.34854 7.42102 7.47896 7.72992 7.78309 8.48297 8.60892 8.98862 9.58879 11.08607 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.003177 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.228964 B = 8811.818733 C = 9429.544606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.511 3.489 12 O -0.541 6.541 13 N -0.740 5.740 14 C 0.128 3.872 15 C -0.083 4.083 16 H 0.119 0.881 17 C 0.484 3.516 18 O -0.510 6.510 19 O -0.509 6.509 20 C -0.104 4.104 21 H 0.101 0.899 22 C -0.154 4.154 23 C 0.046 3.954 24 O -0.377 6.377 25 C 0.053 3.947 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.405 0.595 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.807 -15.442 -1.677 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.300 3.700 12 O -0.418 6.418 13 N -0.396 5.396 14 C 0.003 3.997 15 C -0.103 4.103 16 H 0.137 0.863 17 C 0.326 3.674 18 O -0.398 6.398 19 O -0.322 6.322 20 C -0.123 4.123 21 H 0.119 0.881 22 C -0.192 4.192 23 C -0.031 4.031 24 O -0.295 6.295 25 C -0.023 4.023 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.241 0.759 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.275 0.725 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.609 -14.582 -1.796 25.310 hybrid contribution -0.282 0.270 0.500 0.634 sum 20.327 -14.313 -1.296 24.894 Atomic orbital electron populations 1.69910 1.06302 1.26977 1.51074 1.24974 0.94707 0.99240 0.94340 0.86796 0.80612 0.83400 0.78735 1.20242 1.21454 1.18546 1.21115 0.89286 0.94559 1.51327 0.90923 1.19373 0.96407 0.90239 0.97643 1.21658 0.87773 1.03234 1.03431 1.21557 0.91652 0.82600 0.74175 1.90660 1.70833 1.31509 1.48750 1.46211 1.05641 1.09909 1.77846 1.21191 0.82226 0.92481 1.03753 1.21378 0.97025 0.97605 0.94268 0.86269 1.23251 0.80255 0.76063 0.87826 1.90723 1.51690 1.45783 1.51574 1.84478 1.27750 1.74267 1.45680 1.22569 0.91698 0.98417 0.99662 0.88095 1.23075 0.99114 1.00843 0.96145 1.23171 0.98688 0.89717 0.91528 1.88903 1.31618 1.59699 1.49318 1.23693 0.85470 0.94923 0.98251 0.92712 0.95865 0.96279 0.89571 0.89500 0.75890 0.91103 0.89745 0.72525 0.89822 0.89499 0.92186 0.89636 0.87576 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.74 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.26 5.64 -27.88 -0.16 -2.42 16 11 C 0.51 8.82 7.83 -10.99 -0.09 8.74 16 12 O -0.54 -11.52 15.98 5.55 0.09 -11.43 16 13 N -0.74 -8.90 5.06 -60.29 -0.31 -9.21 16 14 C 0.13 1.29 4.94 -4.04 -0.02 1.27 16 15 C -0.08 -0.62 1.77 -91.77 -0.16 -0.78 16 16 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 17 C 0.48 4.17 7.40 36.00 0.27 4.43 16 18 O -0.51 -5.61 15.21 -18.75 -0.29 -5.90 16 19 O -0.51 -3.56 11.42 -39.27 -0.45 -4.01 16 20 C -0.10 -0.79 2.21 -88.61 -0.20 -0.98 16 21 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 22 C -0.15 -0.98 5.57 -25.20 -0.14 -1.12 16 23 C 0.05 0.32 7.70 37.73 0.29 0.61 16 24 O -0.38 -3.72 11.52 -35.23 -0.41 -4.12 16 25 C 0.05 0.44 6.38 38.21 0.24 0.69 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.60 7.16 -51.93 -0.37 0.22 16 28 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.41 3.95 6.94 -40.82 -0.28 3.67 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.84 7.12 -51.93 -0.37 0.47 16 34 H 0.41 1.45 9.10 45.56 0.41 1.87 16 35 H 0.08 0.46 7.70 -51.93 -0.40 0.06 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.99 7.02 -51.93 -0.36 0.63 16 40 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -36.30 331.30 -5.89 -42.19 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.15 Total: -0.30 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.48 Total: -2.88 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.47 Total: -36.27 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -1.05 Total: -25.47 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.30 -5.89 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.817 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds