Wall clock time and date at job start Tue Mar 31 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86811 * 119.99734 * 2 1 4 4 H 1.48501 * 109.46955 * 269.99787 * 3 2 1 5 5 H 1.48503 * 109.46788 * 29.99762 * 3 2 1 6 6 H 1.48498 * 109.46843 * 149.99866 * 3 2 1 7 7 C 1.37869 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99590 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00372 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46849 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00087 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99846 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99998 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47243 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.47120 * 54.99832 * 15 14 13 17 17 C 1.50693 * 109.46923 * 294.99873 * 15 14 13 18 18 O 1.20825 * 120.00136 * 239.99881 * 17 15 14 19 19 O 1.34235 * 120.00200 * 60.00022 * 17 15 14 20 20 C 1.53002 * 109.47079 * 174.99871 * 15 14 13 21 21 H 1.09002 * 110.80543 * 60.70118 * 20 15 14 22 22 C 1.54813 * 110.90937 * 297.07155 * 20 15 14 23 23 C 1.54097 * 104.18879 * 220.88659 * 22 20 15 24 24 O 1.43744 * 107.29232 * 357.97414 * 23 22 20 25 25 C 1.44377 * 106.98032 * 26.50972 * 24 23 22 26 26 H 0.97005 * 120.00138 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46675 * 60.00070 * 9 7 2 28 28 H 1.08996 * 109.47129 * 300.00234 * 9 7 2 29 29 H 1.08999 * 109.46651 * 60.00310 * 10 9 7 30 30 H 1.08996 * 109.47052 * 300.00479 * 10 9 7 31 31 H 0.96997 * 119.99833 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47551 * 59.99508 * 14 13 11 33 33 H 1.09006 * 109.47137 * 299.99934 * 14 13 11 34 34 H 0.96698 * 117.00349 * 179.97438 * 19 17 15 35 35 H 1.09004 * 110.48713 * 339.56712 * 22 20 15 36 36 H 1.09002 * 110.48733 * 102.20727 * 22 20 15 37 37 H 1.09005 * 109.87484 * 117.39532 * 23 22 20 38 38 H 1.08995 * 109.87930 * 238.39512 * 23 22 20 39 39 H 1.08996 * 110.62453 * 201.44103 * 25 24 23 40 40 H 1.09000 * 110.61716 * 78.44093 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5286 -2.6363 0.0035 12 8 6.1349 -1.5859 0.0030 13 7 6.2025 -3.8035 0.0041 14 6 7.6675 -3.8035 0.0059 15 6 8.1776 -5.2460 0.0069 16 1 7.7440 -5.7853 -0.8352 17 6 7.7774 -5.9193 1.2943 18 8 8.6249 -6.3558 2.0366 19 8 6.4794 -6.0341 1.6165 20 6 9.7026 -5.2477 -0.1170 21 1 10.1598 -4.7237 0.7223 22 6 10.1481 -4.6283 -1.4640 23 6 11.3028 -5.5346 -1.9330 24 8 11.5073 -6.5278 -0.9141 25 6 10.2475 -6.6944 -0.2289 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6798 0.8912 28 1 3.8752 -0.6802 -0.8888 29 1 3.6586 -3.1508 -0.8875 30 1 3.6579 -3.1497 0.8924 31 1 5.7175 -4.6436 0.0042 32 1 8.0298 -3.2897 0.8963 33 1 8.0319 -3.2895 -0.8836 34 1 6.2717 -6.4739 2.4522 35 1 9.3295 -4.6502 -2.1834 36 1 10.5003 -3.6073 -1.3165 37 1 11.0364 -6.0176 -2.8732 38 1 12.2087 -4.9429 -2.0641 39 1 10.4026 -7.1237 0.7609 40 1 9.5705 -7.3152 -0.8158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601066275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:38 Heat of formation + Delta-G solvation = -219.124516 kcal Electronic energy + Delta-G solvation = -22643.817377 eV Core-core repulsion = 19035.784981 eV Total energy + Delta-G solvation = -3608.032397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.88412 -40.52423 -40.13093 -37.17970 -36.83390 -35.50367 -34.28133 -33.23769 -31.15641 -29.59617 -27.92886 -25.67384 -23.95594 -22.94098 -22.68860 -21.42789 -20.79846 -19.26673 -19.01265 -18.35295 -17.58513 -17.41772 -17.06759 -16.54571 -16.44305 -16.25192 -16.16649 -15.87223 -15.04084 -14.84601 -14.63650 -14.54331 -14.19919 -13.84210 -13.46360 -13.32272 -12.98616 -12.85670 -12.74646 -12.55585 -12.28419 -12.16244 -12.03385 -11.93819 -11.73767 -11.65361 -11.49572 -11.37090 -10.76524 -10.76224 -10.64591 -10.08055 -8.29628 -6.32285 1.10847 1.34793 1.37072 1.51735 1.72384 1.95712 2.19704 2.36670 2.95210 3.06384 3.36231 3.49947 3.65134 3.95249 4.00097 4.11430 4.16176 4.24171 4.33098 4.39622 4.45036 4.54262 4.64313 4.71166 4.82781 4.85623 4.89178 5.04899 5.06779 5.16455 5.35299 5.46985 5.48796 5.60085 5.63997 5.89418 6.25801 6.60285 6.74751 6.94821 7.33197 7.34285 8.86022 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029244 B = 0.003177 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.228964 B = 8811.818733 C = 9429.544606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.004 3.996 10 C -0.117 4.117 11 C 0.517 3.483 12 O -0.586 6.586 13 N -0.715 5.715 14 C 0.129 3.871 15 C -0.071 4.071 16 H 0.149 0.851 17 C 0.486 3.514 18 O -0.538 6.538 19 O -0.508 6.508 20 C -0.101 4.101 21 H 0.086 0.914 22 C -0.150 4.150 23 C 0.040 3.960 24 O -0.403 6.403 25 C 0.054 3.946 26 H 0.267 0.733 27 H 0.008 0.992 28 H 0.010 0.990 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.419 0.581 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.430 0.570 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.762 -16.058 -2.492 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.566 4.566 8 H 0.069 0.931 9 C -0.034 4.034 10 C -0.157 4.157 11 C 0.305 3.695 12 O -0.466 6.466 13 N -0.370 5.370 14 C 0.005 3.995 15 C -0.090 4.090 16 H 0.166 0.834 17 C 0.329 3.671 18 O -0.428 6.428 19 O -0.322 6.322 20 C -0.120 4.120 21 H 0.104 0.896 22 C -0.187 4.187 23 C -0.036 4.036 24 O -0.323 6.323 25 C -0.022 4.022 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.258 0.742 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.293 0.707 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.560 -15.262 -2.607 26.544 hybrid contribution -0.600 0.347 0.780 1.043 sum 20.960 -14.915 -1.827 25.790 Atomic orbital electron populations 1.70025 1.07813 1.28049 1.52674 1.25810 0.95474 1.02873 0.94366 0.85831 0.79217 0.79512 0.79158 1.19278 1.20597 1.18543 1.21455 0.91352 0.93674 1.50075 0.93099 1.19232 0.93822 0.93982 0.96368 1.21487 0.89317 0.99702 1.05151 1.21134 0.90966 0.83244 0.74154 1.90651 1.71343 1.33326 1.51303 1.45913 1.06659 1.08949 1.75508 1.21273 0.80484 0.94220 1.03561 1.21322 0.96906 0.95965 0.94847 0.83396 1.23438 0.80369 0.75542 0.87791 1.90729 1.52498 1.47098 1.52428 1.84430 1.26781 1.74211 1.46818 1.22479 0.91587 0.98017 0.99935 0.89586 1.23087 0.99373 1.00694 0.95590 1.23340 0.99360 0.89534 0.91373 1.88874 1.32571 1.60602 1.50213 1.23680 0.85393 0.95438 0.97736 0.92438 0.97345 0.97152 0.87705 0.88046 0.74181 0.92491 0.88918 0.70718 0.88228 0.89207 0.90915 0.89087 0.89157 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.66 13.96 21.44 0.30 -58.36 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.94 46.17 27.47 68.60 1.88 48.05 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.26 -12.76 6.54 99.48 0.65 -12.11 16 7 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 8 H 0.05 3.03 7.99 -2.91 -0.02 3.00 16 9 C 0.00 0.19 3.33 29.85 0.10 0.29 16 10 C -0.12 -4.15 5.64 29.85 0.17 -3.98 16 11 C 0.52 16.78 7.83 87.65 0.69 17.46 16 12 O -0.59 -24.24 15.98 -3.04 -0.05 -24.29 16 13 N -0.72 -15.16 5.06 -463.06 -2.34 -17.51 16 14 C 0.13 2.27 4.94 86.38 0.43 2.70 16 15 C -0.07 -0.86 1.77 -11.54 -0.02 -0.88 16 16 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 17 C 0.49 7.35 7.40 71.23 0.53 7.87 16 18 O -0.54 -11.26 15.21 21.97 0.33 -10.93 16 19 O -0.51 -5.76 11.42 -51.46 -0.59 -6.35 16 20 C -0.10 -1.35 2.21 -9.49 -0.02 -1.37 16 21 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 22 C -0.15 -1.55 5.57 31.58 0.18 -1.37 16 23 C 0.04 0.49 7.70 72.35 0.56 1.05 16 24 O -0.40 -7.53 11.52 -148.98 -1.72 -9.25 16 25 C 0.05 0.83 6.38 72.67 0.46 1.29 16 26 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 27 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 28 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 29 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.42 6.65 6.94 -92.71 -0.64 6.01 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.58 7.12 -2.38 -0.02 1.57 16 34 H 0.43 2.02 9.10 -74.06 -0.67 1.35 16 35 H 0.10 0.73 7.70 -2.38 -0.02 0.71 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.66 7.02 -2.39 -0.02 1.65 16 40 H 0.07 0.88 8.05 -2.39 -0.02 0.86 16 Total: -1.00 -78.58 331.30 1.29 -77.29 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -0.31 Total: 6.71 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 3.77 Total: -5.38 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.04 Total: -75.87 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.02 Total: -50.82 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.88 Total: 48.05 kcal Total: -78.58 1.29 -77.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601066275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.832 kcal (2) G-P(sol) polarization free energy of solvation -78.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds