Wall clock time and date at job start Tue Mar 31 2020 05:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48503 * 109.47298 * 264.98406 * 3 2 1 5 5 H 1.48497 * 109.47284 * 24.98364 * 3 2 1 6 6 H 1.48502 * 109.47402 * 144.98847 * 3 2 1 7 7 C 1.38949 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 206.12503 * 7 2 1 9 9 N 1.37095 * 120.00170 * 26.12965 * 7 2 1 10 10 C 1.46503 * 119.99635 * 8.07927 * 9 7 2 11 11 C 1.53007 * 109.47040 * 263.24562 * 10 9 7 12 12 C 1.50692 * 109.46869 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00500 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00319 * 188.07860 * 9 7 2 16 16 O 1.21294 * 120.00529 * 179.97438 * 15 9 7 17 17 C 1.50704 * 119.99697 * 0.02562 * 15 9 7 18 18 O 1.42903 * 109.46931 * 179.97438 * 17 15 9 19 19 C 1.42902 * 113.99931 * 179.97438 * 18 17 15 20 20 C 1.54886 * 110.48527 * 93.24343 * 19 18 17 21 21 C 1.55231 * 102.58849 * 156.67765 * 20 19 18 22 22 C 1.54272 * 104.22981 * 322.08190 * 21 20 19 23 23 C 1.53874 * 106.59891 * 23.61133 * 22 21 20 24 24 H 0.97007 * 120.00296 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47426 * 23.25206 * 10 9 7 26 26 H 1.09007 * 109.46736 * 143.25186 * 10 9 7 27 27 H 1.08997 * 109.46812 * 300.00655 * 11 10 9 28 28 H 1.09000 * 109.46291 * 60.00303 * 11 10 9 29 29 H 0.96702 * 117.00562 * 179.97438 * 14 12 11 30 30 H 1.08998 * 109.47437 * 60.00051 * 17 15 9 31 31 H 1.08997 * 109.46820 * 299.99293 * 17 15 9 32 32 H 1.08995 * 110.43156 * 330.69657 * 19 18 17 33 33 H 1.09004 * 110.75537 * 275.06923 * 20 19 18 34 34 H 1.08996 * 110.76000 * 38.43763 * 20 19 18 35 35 H 1.09004 * 110.46888 * 203.39437 * 21 20 19 36 36 H 1.09002 * 110.58550 * 80.82875 * 21 20 19 37 37 H 1.09001 * 110.03123 * 264.32433 * 22 21 20 38 38 H 1.09000 * 110.06935 * 142.91913 * 22 21 20 39 39 H 1.08991 * 110.02955 * 240.71470 * 23 22 21 40 40 H 1.08997 * 110.06919 * 119.30383 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.6015 1.9853 -1.3947 5 1 1.3965 2.6810 0.5913 6 1 3.4886 1.4732 0.8033 7 6 2.0088 -1.2033 0.0005 8 1 3.0060 -1.2509 0.4124 9 7 1.4284 -2.3302 -0.5218 10 6 0.1541 -2.2330 -1.2380 11 6 -0.9937 -2.5726 -0.2849 12 6 -2.3045 -2.4733 -1.0217 13 8 -2.3192 -2.1631 -2.1894 14 8 -3.4558 -2.7293 -0.3808 15 6 2.0302 -3.5273 -0.3766 16 8 1.5165 -4.5244 -0.8383 17 6 3.3408 -3.6273 0.3606 18 8 3.7730 -4.9893 0.3812 19 6 5.0137 -5.1952 1.0598 20 6 4.7655 -5.5614 2.5441 21 6 6.0674 -6.3139 2.9292 22 6 6.4179 -7.1339 1.6703 23 6 5.7479 -6.4226 0.4817 24 1 -0.4851 0.8401 -0.0004 25 1 0.0254 -1.2183 -1.6147 26 1 0.1523 -2.9336 -2.0731 27 1 -0.8649 -3.5873 0.0918 28 1 -0.9918 -1.8721 0.5502 29 1 -4.2711 -2.6522 -0.8949 30 1 3.2108 -3.2723 1.3828 31 1 4.0890 -3.0161 -0.1441 32 1 5.6400 -4.3062 0.9856 33 1 4.6427 -4.6625 3.1484 34 1 3.8984 -6.2147 2.6411 35 1 5.8890 -6.9748 3.7775 36 1 6.8650 -5.6072 3.1584 37 1 6.0301 -8.1481 1.7654 38 1 7.4985 -7.1594 1.5294 39 1 5.0349 -7.0916 0.0000 40 1 6.5028 -6.1022 -0.2363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:19 Heat of formation + Delta-G solvation = -175.495367 kcal Electronic energy + Delta-G solvation = -23055.159183 eV Core-core repulsion = 19449.018688 eV Total energy + Delta-G solvation = -3606.140495 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.60676 -38.96707 -38.15527 -35.78862 -35.43406 -34.81540 -31.72250 -30.86580 -28.69371 -28.19952 -26.40768 -25.19860 -23.37166 -20.63209 -20.36952 -20.21207 -19.22793 -17.65331 -17.09043 -16.70731 -16.08581 -15.56690 -15.43670 -15.09104 -15.08039 -14.52082 -14.34918 -13.82587 -13.42858 -13.16376 -12.93941 -12.42936 -12.38842 -12.06529 -11.93487 -11.53360 -11.37849 -11.25511 -11.14413 -11.07324 -10.93263 -10.88177 -10.60622 -10.51997 -10.50038 -10.31259 -9.96141 -9.83607 -9.11752 -9.05877 -8.43453 -7.99223 -6.58110 -4.00798 2.96790 3.04092 3.16034 3.17067 3.56315 3.79811 3.92964 4.05723 4.63433 4.68493 4.83552 4.89556 5.10717 5.33232 5.49406 5.53783 5.63616 5.73252 5.83228 5.88146 5.91972 5.96086 6.02144 6.04767 6.06549 6.26290 6.29393 6.31502 6.33999 6.41966 6.64389 6.99581 7.12110 7.22494 7.36789 7.56343 7.68073 8.26086 8.56758 8.93293 9.37812 9.79087 10.44451 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.004693 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.638238 B = 5964.861875 C = 7317.531773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.043 3.957 3 Si 0.918 3.082 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.346 4.346 8 H 0.102 0.898 9 N -0.441 5.441 10 C 0.154 3.846 11 C -0.111 4.111 12 C 0.492 3.508 13 O -0.529 6.529 14 O -0.526 6.526 15 C 0.458 3.542 16 O -0.588 6.588 17 C 0.063 3.937 18 O -0.357 6.357 19 C 0.081 3.919 20 C -0.148 4.148 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.123 4.123 24 H 0.273 0.727 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.397 0.603 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 -4.834 4.949 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.163 4.163 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.473 4.473 8 H 0.119 0.881 9 N -0.161 5.161 10 C 0.031 3.969 11 C -0.150 4.150 12 C 0.336 3.664 13 O -0.418 6.418 14 O -0.337 6.337 15 C 0.246 3.754 16 O -0.472 6.472 17 C -0.016 4.016 18 O -0.275 6.275 19 C 0.022 3.978 20 C -0.186 4.186 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.160 4.160 24 H 0.084 0.916 25 H 0.125 0.875 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.153 0.847 29 H 0.253 0.747 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.103 -5.273 4.541 9.256 hybrid contribution -0.067 1.338 -0.084 1.343 sum 6.036 -3.934 4.457 8.472 Atomic orbital electron populations 1.69981 1.06229 1.28100 1.45156 1.25141 0.95186 0.99774 0.96209 0.86091 0.79510 0.81163 0.78793 1.20100 1.20932 1.19503 1.19643 1.00445 0.86069 1.41093 0.88054 1.43711 1.19038 1.05592 1.47739 1.20983 0.80855 1.03315 0.91783 1.21807 0.86955 1.04084 1.02138 1.23916 0.85748 0.71071 0.85706 1.90631 1.87855 1.44925 1.18374 1.84614 1.17546 1.83119 1.48380 1.19719 0.87517 0.83343 0.84846 1.90569 1.67555 1.35802 1.53311 1.22124 0.96003 0.83140 1.00329 1.88025 1.37367 1.25729 1.76418 1.22978 0.86016 0.97547 0.91239 1.23065 0.98273 1.00668 0.96566 1.22324 0.97399 0.98805 0.97535 1.22075 1.00009 0.99242 0.94559 1.22164 0.99124 0.97015 0.97734 0.91646 0.87467 0.93163 0.89844 0.84673 0.74656 0.91288 0.91618 0.91839 0.91428 0.90378 0.91651 0.91695 0.91698 0.91903 0.90348 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.61 8.73 55.50 0.48 -20.12 16 2 C 0.04 0.99 4.88 -17.47 -0.09 0.91 16 3 Si 0.92 18.40 29.63 -169.99 -5.04 13.36 16 4 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.35 -8.20 9.25 -14.93 -0.14 -8.34 16 8 H 0.10 2.24 6.47 -52.49 -0.34 1.90 16 9 N -0.44 -10.78 2.64 -114.80 -0.30 -11.08 16 10 C 0.15 3.76 3.81 -4.04 -0.02 3.74 16 11 C -0.11 -2.48 5.61 -27.88 -0.16 -2.64 16 12 C 0.49 10.15 8.33 36.00 0.30 10.45 16 13 O -0.53 -12.07 16.74 -18.75 -0.31 -12.39 16 14 O -0.53 -8.74 13.42 -39.26 -0.53 -9.27 16 15 C 0.46 11.13 7.66 -10.98 -0.08 11.04 16 16 O -0.59 -16.00 16.19 -14.36 -0.23 -16.24 16 17 C 0.06 1.27 4.65 36.01 0.17 1.44 16 18 O -0.36 -7.01 9.59 -55.14 -0.53 -7.54 16 19 C 0.08 1.19 3.33 -25.07 -0.08 1.10 16 20 C -0.15 -1.91 6.65 -24.55 -0.16 -2.08 16 21 C -0.12 -1.26 6.84 -24.88 -0.17 -1.43 16 22 C -0.12 -1.24 6.80 -25.61 -0.17 -1.41 16 23 C -0.12 -1.56 6.56 -25.61 -0.17 -1.73 16 24 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 25 H 0.11 2.76 5.77 -51.93 -0.30 2.46 16 26 H 0.05 1.27 7.59 -51.93 -0.39 0.88 16 27 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 28 H 0.14 3.15 6.42 -51.93 -0.33 2.81 16 29 H 0.40 4.54 9.10 45.56 0.41 4.96 16 30 H 0.07 1.30 8.02 -51.93 -0.42 0.88 16 31 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 32 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -29.91 333.08 -7.32 -37.24 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.11 Total: 9.96 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.77 Total: 11.06 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.18 Total: -31.20 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.60 Total: -45.43 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.04 Total: 13.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.91 -7.32 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.260 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds