Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48503 * 109.47298 * 264.98406 * 3 2 1 5 5 H 1.48497 * 109.47284 * 24.98364 * 3 2 1 6 6 H 1.48502 * 109.47402 * 144.98847 * 3 2 1 7 7 C 1.38949 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 206.12503 * 7 2 1 9 9 N 1.37095 * 120.00170 * 26.12965 * 7 2 1 10 10 C 1.46503 * 119.99635 * 8.07927 * 9 7 2 11 11 C 1.53007 * 109.47040 * 263.24562 * 10 9 7 12 12 C 1.50692 * 109.46869 * 180.02562 * 11 10 9 13 13 O 1.20831 * 120.00500 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00009 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00319 * 188.07860 * 9 7 2 16 16 O 1.21294 * 120.00529 * 179.97438 * 15 9 7 17 17 C 1.50704 * 119.99697 * 0.02562 * 15 9 7 18 18 O 1.42903 * 109.46931 * 179.97438 * 17 15 9 19 19 C 1.42902 * 113.99931 * 179.97438 * 18 17 15 20 20 C 1.54886 * 110.48527 * 93.24343 * 19 18 17 21 21 C 1.55231 * 102.58849 * 156.67765 * 20 19 18 22 22 C 1.54272 * 104.22981 * 322.08190 * 21 20 19 23 23 C 1.53874 * 106.59891 * 23.61133 * 22 21 20 24 24 H 0.97007 * 120.00296 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47426 * 23.25206 * 10 9 7 26 26 H 1.09007 * 109.46736 * 143.25186 * 10 9 7 27 27 H 1.08997 * 109.46812 * 300.00655 * 11 10 9 28 28 H 1.09000 * 109.46291 * 60.00303 * 11 10 9 29 29 H 0.96702 * 117.00562 * 179.97438 * 14 12 11 30 30 H 1.08998 * 109.47437 * 60.00051 * 17 15 9 31 31 H 1.08997 * 109.46820 * 299.99293 * 17 15 9 32 32 H 1.08995 * 110.43156 * 330.69657 * 19 18 17 33 33 H 1.09004 * 110.75537 * 275.06923 * 20 19 18 34 34 H 1.08996 * 110.76000 * 38.43763 * 20 19 18 35 35 H 1.09004 * 110.46888 * 203.39437 * 21 20 19 36 36 H 1.09002 * 110.58550 * 80.82875 * 21 20 19 37 37 H 1.09001 * 110.03123 * 264.32433 * 22 21 20 38 38 H 1.09000 * 110.06935 * 142.91913 * 22 21 20 39 39 H 1.08991 * 110.02955 * 240.71470 * 23 22 21 40 40 H 1.08997 * 110.06919 * 119.30383 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.6015 1.9853 -1.3947 5 1 1.3965 2.6810 0.5913 6 1 3.4886 1.4732 0.8033 7 6 2.0088 -1.2033 0.0005 8 1 3.0060 -1.2509 0.4124 9 7 1.4284 -2.3302 -0.5218 10 6 0.1541 -2.2330 -1.2380 11 6 -0.9937 -2.5726 -0.2849 12 6 -2.3045 -2.4733 -1.0217 13 8 -2.3192 -2.1631 -2.1894 14 8 -3.4558 -2.7293 -0.3808 15 6 2.0302 -3.5273 -0.3766 16 8 1.5165 -4.5244 -0.8383 17 6 3.3408 -3.6273 0.3606 18 8 3.7730 -4.9893 0.3812 19 6 5.0137 -5.1952 1.0598 20 6 4.7655 -5.5614 2.5441 21 6 6.0674 -6.3139 2.9292 22 6 6.4179 -7.1339 1.6703 23 6 5.7479 -6.4226 0.4817 24 1 -0.4851 0.8401 -0.0004 25 1 0.0254 -1.2183 -1.6147 26 1 0.1523 -2.9336 -2.0731 27 1 -0.8649 -3.5873 0.0918 28 1 -0.9918 -1.8721 0.5502 29 1 -4.2711 -2.6522 -0.8949 30 1 3.2108 -3.2723 1.3828 31 1 4.0890 -3.0161 -0.1441 32 1 5.6400 -4.3062 0.9856 33 1 4.6427 -4.6625 3.1484 34 1 3.8984 -6.2147 2.6411 35 1 5.8890 -6.9748 3.7775 36 1 6.8650 -5.6072 3.1584 37 1 6.0301 -8.1481 1.7654 38 1 7.4985 -7.1594 1.5294 39 1 5.0349 -7.0916 0.0000 40 1 6.5028 -6.1022 -0.2363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = -193.481579 kcal Electronic energy + Delta-G solvation = -23055.939124 eV Core-core repulsion = 19449.018688 eV Total energy + Delta-G solvation = -3606.920436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29528 -40.57233 -39.53471 -37.32474 -36.93561 -36.48981 -33.58373 -32.69236 -29.73016 -29.43267 -27.76334 -27.03933 -25.12829 -22.06660 -21.63127 -21.25695 -21.00444 -19.34911 -18.72367 -18.25278 -17.62577 -17.26381 -16.87162 -16.62118 -16.47502 -16.05876 -15.97397 -15.24491 -14.95840 -14.58403 -14.25685 -14.18580 -13.97011 -13.54523 -13.34158 -13.11484 -12.96444 -12.81448 -12.50551 -12.40715 -12.29659 -12.08097 -12.05684 -11.94372 -11.84945 -11.57089 -11.49805 -11.28351 -10.96773 -10.42069 -10.33266 -9.88276 -8.38760 -5.87833 1.28562 1.42415 1.53447 1.62073 1.87129 2.10503 2.33172 2.51910 3.06101 3.36731 3.70627 3.74632 4.06401 4.11079 4.18966 4.28557 4.38952 4.46022 4.47963 4.56471 4.61223 4.63008 4.71466 4.80563 4.82753 4.97213 5.09498 5.19744 5.21714 5.22985 5.25872 5.31326 5.49086 5.49728 5.62978 5.70676 6.28936 6.46025 7.05923 7.09312 7.51172 7.92523 8.63990 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.004693 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.638238 B = 5964.861875 C = 7317.531773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.367 4.367 8 H 0.118 0.882 9 N -0.445 5.445 10 C 0.159 3.841 11 C -0.102 4.102 12 C 0.502 3.498 13 O -0.554 6.554 14 O -0.511 6.511 15 C 0.439 3.561 16 O -0.629 6.629 17 C 0.077 3.923 18 O -0.387 6.387 19 C 0.067 3.933 20 C -0.149 4.149 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.124 4.124 24 H 0.274 0.726 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.424 0.576 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -4.134 6.256 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.493 4.493 8 H 0.136 0.864 9 N -0.163 5.163 10 C 0.035 3.965 11 C -0.140 4.140 12 C 0.346 3.654 13 O -0.445 6.445 14 O -0.324 6.324 15 C 0.229 3.771 16 O -0.517 6.517 17 C -0.002 4.002 18 O -0.307 6.307 19 C 0.010 3.990 20 C -0.187 4.187 21 C -0.153 4.153 22 C -0.154 4.154 23 C -0.162 4.162 24 H 0.084 0.916 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.285 0.715 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.589 -4.573 5.874 10.630 hybrid contribution -0.636 1.112 -0.487 1.370 sum 6.953 -3.461 5.387 9.452 Atomic orbital electron populations 1.70061 1.07409 1.28811 1.45025 1.25962 0.95890 1.02456 0.95414 0.85059 0.78697 0.76950 0.78377 1.20693 1.21042 1.17902 1.20063 1.01291 0.86036 1.41883 0.86414 1.43926 1.18973 1.06229 1.47215 1.20810 0.82159 1.01649 0.91898 1.21532 0.87723 1.03346 1.01411 1.23423 0.86336 0.70643 0.85011 1.90627 1.88389 1.46198 1.19295 1.84522 1.17703 1.82100 1.48094 1.20512 0.88999 0.82644 0.84935 1.90524 1.68975 1.36998 1.55196 1.21933 0.93976 0.84043 1.00256 1.87996 1.39808 1.25311 1.77536 1.23378 0.84538 0.99021 0.92098 1.23057 0.99224 1.00912 0.95535 1.22324 0.96105 0.98996 0.97871 1.22078 1.01089 0.98987 0.93232 1.22215 0.98855 0.96057 0.99042 0.91564 0.88878 0.95240 0.90400 0.85444 0.71506 0.90104 0.89965 0.90331 0.90995 0.92282 0.90340 0.90060 0.91397 0.89680 0.92552 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.03 8.73 21.66 0.19 -41.84 16 2 C 0.01 0.31 4.88 84.93 0.41 0.72 16 3 Si 0.99 36.73 29.63 68.60 2.03 38.76 16 4 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -10.61 7.11 99.48 0.71 -9.91 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 7 C -0.37 -17.25 9.25 84.04 0.78 -16.47 16 8 H 0.12 5.03 6.47 -2.91 -0.02 5.01 16 9 N -0.44 -22.15 2.64 -635.52 -1.68 -23.83 16 10 C 0.16 7.99 3.81 86.38 0.33 8.32 16 11 C -0.10 -4.62 5.61 29.85 0.17 -4.45 16 12 C 0.50 20.67 8.33 71.23 0.59 21.27 16 13 O -0.55 -25.44 16.74 21.95 0.37 -25.07 16 14 O -0.51 -16.22 13.42 -51.43 -0.69 -16.91 16 15 C 0.44 21.86 7.66 87.66 0.67 22.53 16 16 O -0.63 -35.60 16.19 15.96 0.26 -35.34 16 17 C 0.08 3.07 4.65 71.24 0.33 3.40 16 18 O -0.39 -15.33 9.59 -129.94 -1.25 -16.57 16 19 C 0.07 1.91 3.33 31.67 0.11 2.01 16 20 C -0.15 -3.69 6.65 32.00 0.21 -3.48 16 21 C -0.12 -2.05 6.84 31.79 0.22 -1.83 16 22 C -0.12 -2.09 6.80 31.32 0.21 -1.88 16 23 C -0.12 -3.02 6.56 31.32 0.21 -2.82 16 24 H 0.27 12.59 8.31 -92.70 -0.77 11.82 16 25 H 0.09 4.93 5.77 -2.39 -0.01 4.92 16 26 H 0.03 1.57 7.59 -2.38 -0.02 1.55 16 27 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 28 H 0.13 6.03 6.42 -2.39 -0.02 6.01 16 29 H 0.42 8.72 9.10 -74.06 -0.67 8.05 16 30 H 0.08 2.98 8.02 -2.39 -0.02 2.97 16 31 H 0.08 2.96 7.75 -2.39 -0.02 2.94 16 32 H 0.08 1.97 7.84 -2.39 -0.02 1.95 16 33 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.61 8.07 -2.39 -0.02 1.59 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.34 333.08 3.85 -61.49 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.38 Total: 31.99 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 4.24 Total: 27.32 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -1.49 Total: -65.67 kcal Atomic # 8 Polarization: -92.59 SS G_CDS: -1.31 Total: -93.90 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -65.34 3.85 -61.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.993 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds