Wall clock time and date at job start Tue Mar 31 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46998 * 239.99733 * 3 2 1 5 5 H 1.48501 * 109.47350 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47134 * 119.99678 * 3 2 1 7 7 C 1.38946 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00171 * 158.41469 * 7 2 1 9 9 N 1.37095 * 120.00056 * 338.41942 * 7 2 1 10 10 C 1.46503 * 119.99852 * 325.66575 * 9 7 2 11 11 C 1.53003 * 109.47039 * 265.56101 * 10 9 7 12 12 C 1.50707 * 109.46817 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99979 * 0.02562 * 12 11 10 14 14 O 1.34225 * 119.99737 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00436 * 145.66871 * 9 7 2 16 16 O 1.21287 * 120.00332 * 179.97438 * 15 9 7 17 17 C 1.50704 * 119.99590 * 0.02562 * 15 9 7 18 18 C 1.53009 * 109.46764 * 180.02562 * 17 15 9 19 19 C 1.52997 * 109.46662 * 179.97438 * 18 17 15 20 20 O 1.42894 * 112.85265 * 53.80465 * 19 18 17 21 21 C 1.53786 * 113.61507 * 282.49236 * 19 18 17 22 22 C 1.53774 * 87.08419 * 220.02489 * 21 19 18 23 23 C 1.53777 * 87.08292 * 25.43339 * 22 21 19 24 24 H 0.97007 * 119.99720 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46850 * 25.56382 * 10 9 7 26 26 H 1.08998 * 109.47184 * 145.56449 * 10 9 7 27 27 H 1.08992 * 109.47171 * 299.99761 * 11 10 9 28 28 H 1.09006 * 109.46907 * 60.00475 * 11 10 9 29 29 H 0.96701 * 117.00299 * 180.02562 * 14 12 11 30 30 H 1.09000 * 109.47480 * 59.99884 * 17 15 9 31 31 H 1.08995 * 109.46833 * 299.99654 * 17 15 9 32 32 H 1.09000 * 109.47221 * 59.99720 * 18 17 15 33 33 H 1.08995 * 109.47158 * 299.99449 * 18 17 15 34 34 H 0.96703 * 113.99890 * 309.66471 * 20 19 18 35 35 H 1.09001 * 113.61726 * 334.57423 * 21 19 18 36 36 H 1.08998 * 113.61073 * 105.47103 * 21 19 18 37 37 H 1.09003 * 113.61209 * 270.88536 * 22 21 19 38 38 H 1.08998 * 113.61706 * 139.98731 * 22 21 19 39 39 H 1.09003 * 113.61430 * 220.02289 * 23 22 21 40 40 H 1.08996 * 113.61519 * 89.11952 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0320 -1.2363 -0.3435 9 7 1.3954 -2.3488 0.4377 10 6 0.4201 -2.2866 1.5292 11 6 1.1220 -2.5764 2.8575 12 6 0.1188 -2.5118 3.9802 13 8 -1.0388 -2.2603 3.7423 14 8 0.5113 -2.7336 5.2445 15 6 1.6897 -3.5321 -0.1364 16 8 1.1473 -4.5455 0.2507 17 6 2.6934 -3.5961 -1.2587 18 6 2.8416 -5.0448 -1.7283 19 6 3.8601 -5.1097 -2.8681 20 8 5.1130 -4.5130 -2.5273 21 6 3.3005 -4.6414 -4.2218 22 6 4.0858 -5.8001 -4.8584 23 6 3.9938 -6.5072 -3.4959 24 1 -0.4850 0.8401 -0.0004 25 1 -0.0247 -1.2921 1.5626 26 1 -0.3606 -3.0285 1.3614 27 1 1.5668 -3.5708 2.8240 28 1 1.9028 -1.8344 3.0252 29 1 -0.1681 -2.6817 5.9307 30 1 3.6568 -3.2277 -0.9060 31 1 2.3501 -2.9788 -2.0888 32 1 1.8781 -5.4127 -2.0811 33 1 3.1847 -5.6625 -0.8984 34 1 5.0368 -3.6244 -2.1536 35 1 2.2191 -4.7477 -4.3076 36 1 3.6551 -3.6558 -4.5234 37 1 5.1033 -5.5331 -5.1439 38 1 3.5425 -6.3112 -5.6532 39 1 4.9082 -7.0279 -3.2116 40 1 3.1020 -7.1236 -3.3832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:41 Heat of formation + Delta-G solvation = -165.052039 kcal Electronic energy + Delta-G solvation = -23161.287982 eV Core-core repulsion = 19555.600343 eV Total energy + Delta-G solvation = -3605.687638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87003 -39.64466 -38.44478 -35.82711 -35.04085 -34.47848 -32.22304 -31.81499 -30.44754 -26.17722 -25.51724 -25.22945 -23.64144 -21.60909 -20.35227 -19.49574 -19.11220 -17.78442 -17.05812 -16.45702 -15.96271 -15.84682 -15.49118 -15.01223 -14.87242 -14.69956 -14.38534 -14.05479 -13.34134 -13.20409 -12.76128 -12.65335 -12.42124 -12.31987 -11.90870 -11.50430 -11.39902 -11.27936 -11.16483 -11.08637 -10.96461 -10.80358 -10.72217 -10.49747 -10.42223 -10.16232 -10.08522 -9.89306 -9.39261 -9.21265 -8.53437 -7.68471 -6.47145 -4.17503 2.65889 3.05312 3.15972 3.16352 3.40336 3.80809 4.04452 4.21209 4.58473 4.71262 4.85367 4.88829 4.97466 5.15511 5.56843 5.62040 5.67502 5.76998 5.79487 5.81026 5.84472 5.96878 5.99174 6.06511 6.18590 6.27383 6.34021 6.39492 6.49028 6.62289 6.72337 6.81105 6.87538 7.25581 7.40218 7.78468 7.83449 8.24082 8.30207 8.96819 9.39394 9.82574 10.53972 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.005056 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.311425 B = 5536.828216 C = 6889.323863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.349 4.349 8 H 0.093 0.907 9 N -0.438 5.438 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.470 3.530 16 O -0.605 6.605 17 C -0.121 4.121 18 C -0.117 4.117 19 C 0.109 3.891 20 O -0.548 6.548 21 C -0.165 4.165 22 C -0.136 4.136 23 C -0.127 4.127 24 H 0.273 0.727 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.401 0.599 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.380 0.620 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -4.371 -1.413 7.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.163 4.163 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.476 4.476 8 H 0.110 0.890 9 N -0.156 5.156 10 C 0.000 4.000 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.260 3.740 16 O -0.491 6.491 17 C -0.161 4.161 18 C -0.156 4.156 19 C 0.068 3.932 20 O -0.356 6.356 21 C -0.203 4.203 22 C -0.174 4.174 23 C -0.165 4.165 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.259 0.741 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.887 -5.211 -1.836 8.074 hybrid contribution -0.292 1.635 0.740 1.818 sum 5.596 -3.576 -1.097 6.731 Atomic orbital electron populations 1.69914 1.06276 1.28220 1.44279 1.25378 0.95064 0.99993 0.95865 0.86225 0.79410 0.81222 0.79221 1.19597 1.20855 1.19716 1.19387 0.96940 0.85210 1.46088 0.88959 1.43432 1.37929 1.05944 1.28322 1.21209 0.90818 1.05764 0.82172 1.21868 0.97676 1.04995 0.91850 1.23792 0.89226 0.71633 0.82836 1.90703 1.20743 1.44466 1.84247 1.84591 1.46598 1.84011 1.18436 1.20438 0.85403 0.83918 0.84267 1.90534 1.56629 1.35230 1.66702 1.21322 0.99231 0.96806 0.98711 1.21848 0.98814 0.97184 0.97704 1.22245 0.84105 0.94334 0.92546 1.86389 1.28903 1.35401 1.84864 1.23617 1.00556 0.99032 0.97112 1.22755 1.00634 0.97540 0.96430 1.23013 1.02625 0.95238 0.95602 0.91680 0.86387 0.91865 0.88434 0.87871 0.74141 0.90524 0.89371 0.90538 0.91086 0.77054 0.89338 0.91060 0.90172 0.91762 0.90983 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.94 11.31 55.50 0.63 -21.31 16 2 C 0.04 1.06 4.94 -17.47 -0.09 0.97 16 3 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.35 -8.19 8.70 -14.94 -0.13 -8.32 16 8 H 0.09 2.01 6.98 -52.49 -0.37 1.64 16 9 N -0.44 -10.40 2.55 -114.81 -0.29 -10.70 16 10 C 0.12 2.94 4.21 -4.04 -0.02 2.92 16 11 C -0.12 -2.45 6.11 -27.88 -0.17 -2.62 16 12 C 0.48 8.90 8.33 36.01 0.30 9.20 16 13 O -0.51 -11.01 16.74 -18.75 -0.31 -11.33 16 14 O -0.52 -7.52 13.42 -39.24 -0.53 -8.05 16 15 C 0.47 10.74 7.61 -10.98 -0.08 10.66 16 16 O -0.60 -15.19 15.64 5.55 0.09 -15.10 16 17 C -0.12 -2.18 3.92 -27.88 -0.11 -2.29 16 18 C -0.12 -1.91 4.14 -26.73 -0.11 -2.02 16 19 C 0.11 1.51 1.38 -89.80 -0.12 1.39 16 20 O -0.55 -7.80 13.39 -35.23 -0.47 -8.27 16 21 C -0.17 -2.11 7.32 -25.92 -0.19 -2.30 16 22 C -0.14 -1.56 8.02 -25.92 -0.21 -1.77 16 23 C -0.13 -1.58 7.47 -25.92 -0.19 -1.77 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.12 3.03 5.29 -51.93 -0.27 2.76 16 26 H 0.06 1.61 7.52 -51.93 -0.39 1.22 16 27 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 28 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 29 H 0.40 3.79 9.10 45.56 0.41 4.20 16 30 H 0.08 1.25 6.26 -51.93 -0.32 0.92 16 31 H 0.09 1.60 8.00 -51.93 -0.42 1.19 16 32 H 0.08 1.30 8.01 -51.93 -0.42 0.89 16 33 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.38 4.58 7.18 45.56 0.33 4.90 16 35 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.06 8.10 -51.93 -0.42 0.63 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -30.43 335.86 -6.36 -36.79 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -4.38 Total: 15.44 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.12 Total: 4.04 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.33 Total: -32.01 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.23 Total: -42.75 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.43 -6.36 -36.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.259 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds