Wall clock time and date at job start Tue Mar 31 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48500 * 109.46998 * 239.99733 * 3 2 1 5 5 H 1.48501 * 109.47350 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47134 * 119.99678 * 3 2 1 7 7 C 1.38946 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00171 * 158.41469 * 7 2 1 9 9 N 1.37095 * 120.00056 * 338.41942 * 7 2 1 10 10 C 1.46503 * 119.99852 * 325.66575 * 9 7 2 11 11 C 1.53003 * 109.47039 * 265.56101 * 10 9 7 12 12 C 1.50707 * 109.46817 * 179.97438 * 11 10 9 13 13 O 1.20826 * 119.99979 * 0.02562 * 12 11 10 14 14 O 1.34225 * 119.99737 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00436 * 145.66871 * 9 7 2 16 16 O 1.21287 * 120.00332 * 179.97438 * 15 9 7 17 17 C 1.50704 * 119.99590 * 0.02562 * 15 9 7 18 18 C 1.53009 * 109.46764 * 180.02562 * 17 15 9 19 19 C 1.52997 * 109.46662 * 179.97438 * 18 17 15 20 20 O 1.42894 * 112.85265 * 53.80465 * 19 18 17 21 21 C 1.53786 * 113.61507 * 282.49236 * 19 18 17 22 22 C 1.53774 * 87.08419 * 220.02489 * 21 19 18 23 23 C 1.53777 * 87.08292 * 25.43339 * 22 21 19 24 24 H 0.97007 * 119.99720 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46850 * 25.56382 * 10 9 7 26 26 H 1.08998 * 109.47184 * 145.56449 * 10 9 7 27 27 H 1.08992 * 109.47171 * 299.99761 * 11 10 9 28 28 H 1.09006 * 109.46907 * 60.00475 * 11 10 9 29 29 H 0.96701 * 117.00299 * 180.02562 * 14 12 11 30 30 H 1.09000 * 109.47480 * 59.99884 * 17 15 9 31 31 H 1.08995 * 109.46833 * 299.99654 * 17 15 9 32 32 H 1.09000 * 109.47221 * 59.99720 * 18 17 15 33 33 H 1.08995 * 109.47158 * 299.99449 * 18 17 15 34 34 H 0.96703 * 113.99890 * 309.66471 * 20 19 18 35 35 H 1.09001 * 113.61726 * 334.57423 * 21 19 18 36 36 H 1.08998 * 113.61073 * 105.47103 * 21 19 18 37 37 H 1.09003 * 113.61209 * 270.88536 * 22 21 19 38 38 H 1.08998 * 113.61706 * 139.98731 * 22 21 19 39 39 H 1.09003 * 113.61430 * 220.02289 * 23 22 21 40 40 H 1.08996 * 113.61519 * 89.11952 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 0.0005 8 1 3.0320 -1.2363 -0.3435 9 7 1.3954 -2.3488 0.4377 10 6 0.4201 -2.2866 1.5292 11 6 1.1220 -2.5764 2.8575 12 6 0.1188 -2.5118 3.9802 13 8 -1.0388 -2.2603 3.7423 14 8 0.5113 -2.7336 5.2445 15 6 1.6897 -3.5321 -0.1364 16 8 1.1473 -4.5455 0.2507 17 6 2.6934 -3.5961 -1.2587 18 6 2.8416 -5.0448 -1.7283 19 6 3.8601 -5.1097 -2.8681 20 8 5.1130 -4.5130 -2.5273 21 6 3.3005 -4.6414 -4.2218 22 6 4.0858 -5.8001 -4.8584 23 6 3.9938 -6.5072 -3.4959 24 1 -0.4850 0.8401 -0.0004 25 1 -0.0247 -1.2921 1.5626 26 1 -0.3606 -3.0285 1.3614 27 1 1.5668 -3.5708 2.8240 28 1 1.9028 -1.8344 3.0252 29 1 -0.1681 -2.6817 5.9307 30 1 3.6568 -3.2277 -0.9060 31 1 2.3501 -2.9788 -2.0888 32 1 1.8781 -5.4127 -2.0811 33 1 3.1847 -5.6625 -0.8984 34 1 5.0368 -3.6244 -2.1536 35 1 2.2191 -4.7477 -4.3076 36 1 3.6551 -3.6558 -4.5234 37 1 5.1033 -5.5331 -5.1439 38 1 3.5425 -6.3112 -5.6532 39 1 4.9082 -7.0279 -3.2116 40 1 3.1020 -7.1236 -3.3832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:40 Heat of formation + Delta-G solvation = -186.266636 kcal Electronic energy + Delta-G solvation = -23162.207916 eV Core-core repulsion = 19555.600343 eV Total energy + Delta-G solvation = -3606.607572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37525 -40.87676 -40.05487 -37.26798 -36.81855 -35.54218 -33.89324 -33.47159 -32.08981 -27.52137 -27.06368 -26.55885 -25.15577 -22.88009 -21.86118 -20.92452 -20.52534 -19.26865 -18.63949 -18.02579 -17.57311 -17.18867 -16.92700 -16.43432 -16.29729 -16.11857 -15.78008 -15.58693 -14.76805 -14.49125 -14.34019 -14.23341 -13.95829 -13.50993 -13.33354 -13.05577 -12.88357 -12.74208 -12.67516 -12.57933 -12.42468 -12.12178 -11.99457 -11.90559 -11.89296 -11.68552 -11.66780 -11.08602 -10.93657 -10.51765 -10.34230 -9.55791 -8.29603 -6.05643 1.16805 1.45915 1.52857 1.60771 1.93822 2.07788 2.37417 3.02465 3.08590 3.19335 3.64823 3.78296 3.94859 3.96656 3.99077 4.12093 4.32348 4.38817 4.42264 4.50991 4.71311 4.74593 4.82991 4.84876 4.88623 5.01996 5.05688 5.08596 5.17277 5.31973 5.36261 5.43248 5.50443 5.53018 5.58739 5.96607 6.40031 6.83001 6.98378 7.12794 7.57201 8.00534 8.72544 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.005056 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.311425 B = 5536.828216 C = 6889.323863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.001 3.999 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.356 4.356 8 H 0.113 0.887 9 N -0.449 5.449 10 C 0.128 3.872 11 C -0.116 4.116 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.456 3.544 16 O -0.635 6.635 17 C -0.110 4.110 18 C -0.107 4.107 19 C 0.107 3.893 20 O -0.555 6.555 21 C -0.167 4.167 22 C -0.126 4.126 23 C -0.129 4.129 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.030 0.970 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.427 0.573 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.388 0.612 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.228 -4.013 -1.645 9.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.202 4.202 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.131 0.869 9 N -0.166 5.166 10 C 0.003 3.997 11 C -0.155 4.155 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.320 6.320 15 C 0.247 3.753 16 O -0.523 6.523 17 C -0.149 4.149 18 C -0.146 4.146 19 C 0.065 3.935 20 O -0.363 6.363 21 C -0.204 4.204 22 C -0.163 4.163 23 C -0.166 4.166 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.048 0.952 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.288 0.712 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.015 -4.859 -2.040 9.592 hybrid contribution -0.987 1.473 0.888 1.983 sum 7.028 -3.386 -1.152 7.885 Atomic orbital electron populations 1.70053 1.08094 1.28805 1.46034 1.26243 0.95526 1.03171 0.95279 0.85177 0.77951 0.76617 0.79853 1.18163 1.21845 1.18859 1.19848 0.97684 0.85062 1.45669 0.86943 1.43683 1.37752 1.06570 1.28638 1.20973 0.90813 1.03354 0.84522 1.21621 0.97771 1.05512 0.90590 1.23396 0.88098 0.70876 0.83848 1.90704 1.22028 1.46303 1.85043 1.84503 1.47262 1.82906 1.17362 1.21290 0.85904 0.83213 0.84901 1.90505 1.57928 1.36132 1.67766 1.21282 0.98677 0.98191 0.96758 1.21754 0.99074 0.95565 0.98171 1.22280 0.83487 0.95807 0.91878 1.86384 1.28844 1.36122 1.84991 1.23624 1.00648 0.99776 0.96376 1.22712 1.00735 0.96558 0.96337 1.23077 1.03050 0.94511 0.95965 0.91967 0.88487 0.95162 0.88112 0.86414 0.71154 0.88317 0.89273 0.91775 0.92454 0.76099 0.89531 0.90826 0.89920 0.90049 0.90866 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.93 11.31 21.66 0.24 -46.69 16 2 C 0.00 0.05 4.94 84.93 0.42 0.47 16 3 Si 0.98 36.98 29.60 68.60 2.03 39.01 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.29 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 7 C -0.36 -16.45 8.70 84.04 0.73 -15.72 16 8 H 0.11 4.64 6.98 -2.91 -0.02 4.62 16 9 N -0.45 -21.52 2.55 -635.54 -1.62 -23.14 16 10 C 0.13 6.23 4.21 86.38 0.36 6.59 16 11 C -0.12 -4.55 6.11 29.85 0.18 -4.37 16 12 C 0.49 17.96 8.33 71.24 0.59 18.56 16 13 O -0.55 -23.88 16.74 21.96 0.37 -23.52 16 14 O -0.51 -13.41 13.42 -51.37 -0.69 -14.10 16 15 C 0.46 21.03 7.61 87.66 0.67 21.70 16 16 O -0.63 -32.70 15.64 -3.05 -0.05 -32.75 16 17 C -0.11 -3.87 3.92 29.85 0.12 -3.75 16 18 C -0.11 -3.44 4.14 30.60 0.13 -3.31 16 19 C 0.11 2.80 1.38 -10.26 -0.01 2.78 16 20 O -0.55 -14.62 13.39 -148.98 -1.99 -16.62 16 21 C -0.17 -3.94 7.32 31.12 0.23 -3.71 16 22 C -0.13 -2.58 8.02 31.12 0.25 -2.34 16 23 C -0.13 -2.95 7.47 31.12 0.23 -2.72 16 24 H 0.27 13.62 8.31 -92.70 -0.77 12.85 16 25 H 0.10 5.18 5.29 -2.39 -0.01 5.16 16 26 H 0.03 1.62 7.52 -2.39 -0.02 1.60 16 27 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 28 H 0.12 4.24 8.14 -2.38 -0.02 4.22 16 29 H 0.43 6.93 9.10 -74.06 -0.67 6.26 16 30 H 0.10 3.03 6.26 -2.39 -0.01 3.01 16 31 H 0.09 3.15 8.00 -2.39 -0.02 3.13 16 32 H 0.06 2.19 8.01 -2.39 -0.02 2.17 16 33 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.39 8.45 7.18 -74.06 -0.53 7.92 16 35 H 0.09 2.08 8.03 -2.39 -0.02 2.06 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 Total: -1.00 -66.31 335.86 2.05 -64.26 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.13 Total: 39.36 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 3.90 Total: 14.19 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -1.38 Total: -69.83 kcal Atomic # 8 Polarization: -84.62 SS G_CDS: -2.36 Total: -86.99 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -66.31 2.05 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.008 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds