Wall clock time and date at job start Tue Mar 31 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48505 * 109.46929 * 239.99882 * 3 2 1 5 5 H 1.48503 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47256 * 120.00050 * 3 2 1 7 7 C 1.38947 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99834 * 179.84750 * 7 2 1 9 9 N 1.37098 * 119.99888 * 359.84404 * 7 2 1 10 10 C 1.46504 * 120.00079 * 347.63521 * 9 7 2 11 11 C 1.50704 * 109.46569 * 83.14032 * 10 9 7 12 12 O 1.20825 * 120.00028 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99442 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99928 * 167.64099 * 9 7 2 15 15 O 1.21293 * 119.99602 * 4.84406 * 14 9 7 16 16 C 1.50700 * 120.00073 * 184.84205 * 14 9 7 17 17 H 1.08993 * 109.47201 * 318.25480 * 16 14 9 18 18 O 1.42894 * 109.47141 * 198.25070 * 16 14 9 19 19 C 1.53002 * 109.46593 * 78.25415 * 16 14 9 20 20 C 1.53003 * 109.46657 * 179.75807 * 19 16 14 21 21 C 1.53000 * 109.47127 * 179.97438 * 20 19 16 22 22 C 1.53007 * 109.47218 * 59.99753 * 21 20 19 23 23 C 1.53002 * 109.46920 * 300.00284 * 22 21 20 24 24 C 1.52995 * 109.47693 * 59.75899 * 19 16 14 25 25 H 0.97000 * 119.99928 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.46933 * 203.13807 * 10 9 7 27 27 H 1.08999 * 109.47159 * 323.14076 * 10 9 7 28 28 H 0.96700 * 116.99629 * 179.97438 * 13 11 10 29 29 H 0.96697 * 114.00370 * 300.00018 * 18 16 14 30 30 H 1.09000 * 109.47229 * 299.74950 * 19 16 14 31 31 H 1.08996 * 109.47315 * 59.99813 * 20 19 16 32 32 H 1.08994 * 109.47261 * 299.99364 * 20 19 16 33 33 H 1.09002 * 109.47273 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47301 * 300.00176 * 21 20 19 35 35 H 1.09002 * 109.46639 * 60.00018 * 22 21 20 36 36 H 1.08990 * 109.47203 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.47247 * 299.99362 * 23 22 21 38 38 H 1.08996 * 109.46962 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.46822 * 299.99775 * 24 19 16 40 40 H 1.08998 * 109.47072 * 59.99056 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0030 9 7 1.3234 -2.3906 0.0022 10 6 -0.1155 -2.4051 0.2773 11 6 -0.8719 -2.0915 -0.9880 12 8 -0.2707 -1.8784 -2.0141 13 8 -2.2134 -2.0501 -0.9749 14 6 1.9733 -3.5445 -0.2481 15 8 3.1781 -3.5438 -0.3888 16 6 1.2031 -4.8356 -0.3533 17 1 0.4429 -4.8697 0.4270 18 8 2.0980 -5.9383 -0.1949 19 6 0.5303 -4.9177 -1.7250 20 6 -0.2467 -6.2312 -1.8340 21 6 -0.9200 -6.3132 -3.2054 22 6 0.1463 -6.2589 -4.3013 23 6 0.9233 -4.9453 -4.1922 24 6 1.5970 -4.8638 -2.8204 25 1 -0.4850 0.8400 -0.0004 26 1 -0.4062 -3.3911 0.6395 27 1 -0.3482 -1.6566 1.0347 28 1 -2.6544 -1.8445 -1.8107 29 1 2.8023 -5.9715 -0.8567 30 1 -0.1556 -4.0790 -1.8440 31 1 -1.0066 -6.2697 -1.0536 32 1 0.4391 -7.0700 -1.7150 33 1 -1.4732 -7.2491 -3.2832 34 1 -1.6059 -5.4743 -3.3241 35 1 0.8322 -7.0977 -4.1825 36 1 -0.3333 -6.3177 -5.2782 37 1 0.2374 -4.1065 -4.3109 38 1 1.6833 -4.9069 -4.9725 39 1 2.1505 -3.9280 -2.7427 40 1 2.2829 -5.7025 -2.7013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:23 Heat of formation + Delta-G solvation = -181.160579 kcal Electronic energy + Delta-G solvation = -25161.070100 eV Core-core repulsion = 21554.683943 eV Total energy + Delta-G solvation = -3606.386157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.07111 -38.74923 -37.65612 -35.79901 -35.02623 -34.37658 -31.98521 -30.85954 -30.47449 -27.83935 -26.63984 -24.33268 -22.44083 -21.50958 -21.05470 -19.41859 -19.24055 -17.17072 -17.13230 -16.64887 -16.11315 -15.65710 -15.01808 -14.85051 -14.56909 -14.28801 -14.01009 -13.92971 -13.54327 -13.22447 -12.94307 -12.33937 -12.12689 -11.94978 -11.91463 -11.68657 -11.35446 -11.11815 -11.01195 -10.97474 -10.75568 -10.57211 -10.50596 -10.41317 -10.36416 -9.98925 -9.86072 -9.61821 -9.58316 -9.09766 -8.36774 -8.05386 -6.44583 -3.99903 3.10970 3.19811 3.23487 3.45231 3.67152 3.98351 4.22449 4.63482 4.81728 4.90253 4.95433 5.02581 5.11715 5.34726 5.43888 5.57498 5.62009 5.70119 5.77019 5.78409 5.86331 5.89156 6.03831 6.13007 6.22161 6.35727 6.39418 6.45190 6.51585 6.53768 6.74666 6.76399 6.80548 7.44380 7.56942 7.81506 8.03087 8.29127 8.99881 9.09749 9.23367 9.71117 10.57024 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.006990 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.073274 B = 4004.977451 C = 4487.191392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.028 3.972 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.284 4.284 8 H 0.108 0.892 9 N -0.430 5.430 10 C 0.143 3.857 11 C 0.501 3.499 12 O -0.515 6.515 13 O -0.535 6.535 14 C 0.434 3.566 15 O -0.574 6.574 16 C 0.096 3.904 17 H 0.106 0.894 18 O -0.546 6.546 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.111 4.111 25 H 0.273 0.727 26 H 0.067 0.933 27 H 0.144 0.856 28 H 0.389 0.611 29 H 0.377 0.623 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -8.292 -3.549 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.411 4.411 8 H 0.125 0.875 9 N -0.151 5.151 10 C 0.017 3.983 11 C 0.342 3.658 12 O -0.401 6.401 13 O -0.345 6.345 14 C 0.223 3.777 15 O -0.458 6.458 16 C 0.033 3.967 17 H 0.123 0.877 18 O -0.352 6.352 19 C -0.133 4.133 20 C -0.146 4.146 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.149 4.149 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.161 0.839 28 H 0.245 0.755 29 H 0.226 0.774 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.261 -8.291 -3.011 10.271 hybrid contribution 0.152 1.417 -1.110 1.806 sum -5.109 -6.874 -4.121 9.505 Atomic orbital electron populations 1.69436 1.05937 1.27727 1.51600 1.25208 0.95701 0.99947 0.96227 0.85732 0.78617 0.79765 0.79016 1.19909 1.20895 1.19835 1.19797 0.93128 0.81641 1.46564 0.87452 1.43470 1.05249 1.06299 1.60043 1.21024 0.81174 1.01658 0.94448 1.23478 0.79196 0.72016 0.91077 1.90595 1.68817 1.46239 1.34488 1.84529 1.23474 1.84493 1.42010 1.20787 0.88814 0.85637 0.82502 1.90528 1.14266 1.86230 1.54777 1.21874 0.91338 0.85803 0.97662 0.87654 1.86445 1.44056 1.46411 1.58256 1.21821 0.98230 0.99141 0.94152 1.21507 0.98992 0.97545 0.96555 1.21522 0.97760 1.01202 0.95026 1.21536 0.97820 0.98062 0.98077 1.21480 0.99277 0.97478 0.97038 1.21480 0.97212 1.02420 0.93769 0.91612 0.91547 0.83869 0.75548 0.77376 0.89456 0.92217 0.91348 0.92369 0.92226 0.92258 0.92608 0.91769 0.92435 0.90781 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.69 7.81 55.50 0.43 -22.26 16 2 C 0.03 0.72 5.27 -17.47 -0.09 0.63 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.28 -7.68 9.31 -14.93 -0.14 -7.82 16 8 H 0.11 3.04 7.21 -52.49 -0.38 2.67 16 9 N -0.43 -10.59 2.18 -116.09 -0.25 -10.84 16 10 C 0.14 3.08 5.01 -5.19 -0.03 3.06 16 11 C 0.50 10.77 4.26 36.01 0.15 10.92 16 12 O -0.51 -12.66 15.51 -18.75 -0.29 -12.95 16 13 O -0.53 -9.52 13.42 -39.25 -0.53 -10.04 16 14 C 0.43 10.28 5.69 -10.99 -0.06 10.22 16 15 O -0.57 -15.33 15.73 -13.67 -0.21 -15.54 16 16 C 0.10 1.81 2.45 -27.88 -0.07 1.74 16 17 H 0.11 1.84 6.25 -51.93 -0.32 1.52 16 18 O -0.55 -9.96 12.38 -54.44 -0.67 -10.63 16 19 C -0.11 -1.95 2.01 -90.62 -0.18 -2.13 16 20 C -0.11 -1.51 5.06 -26.73 -0.14 -1.64 16 21 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 22 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 23 C -0.12 -1.72 5.92 -26.71 -0.16 -1.88 16 24 C -0.11 -1.92 4.66 -26.71 -0.12 -2.04 16 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 26 H 0.07 1.20 5.77 -51.93 -0.30 0.90 16 27 H 0.14 3.26 6.24 -51.93 -0.32 2.94 16 28 H 0.39 5.37 9.10 45.56 0.41 5.78 16 29 H 0.38 6.40 6.96 45.56 0.32 6.71 16 30 H 0.09 1.65 4.43 -51.93 -0.23 1.42 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.58 7.06 -51.93 -0.37 1.21 16 40 H 0.06 0.89 6.78 -51.93 -0.35 0.54 16 LS Contribution 312.18 15.07 4.70 4.70 Total: -1.00 -31.03 312.18 -7.03 -38.06 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -4.04 Total: 15.89 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.15 Total: 7.82 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.18 Total: -33.10 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.71 Total: -49.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.03 -7.03 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.101 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds