Wall clock time and date at job start Tue Mar 31 2020 05:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48505 * 109.46929 * 239.99882 * 3 2 1 5 5 H 1.48503 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47256 * 120.00050 * 3 2 1 7 7 C 1.38947 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99834 * 179.84750 * 7 2 1 9 9 N 1.37098 * 119.99888 * 359.84404 * 7 2 1 10 10 C 1.46504 * 120.00079 * 347.63521 * 9 7 2 11 11 C 1.50704 * 109.46569 * 83.14032 * 10 9 7 12 12 O 1.20825 * 120.00028 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99442 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99928 * 167.64099 * 9 7 2 15 15 O 1.21293 * 119.99602 * 4.84406 * 14 9 7 16 16 C 1.50700 * 120.00073 * 184.84205 * 14 9 7 17 17 H 1.08993 * 109.47201 * 318.25480 * 16 14 9 18 18 O 1.42894 * 109.47141 * 198.25070 * 16 14 9 19 19 C 1.53002 * 109.46593 * 78.25415 * 16 14 9 20 20 C 1.53003 * 109.46657 * 179.75807 * 19 16 14 21 21 C 1.53000 * 109.47127 * 179.97438 * 20 19 16 22 22 C 1.53007 * 109.47218 * 59.99753 * 21 20 19 23 23 C 1.53002 * 109.46920 * 300.00284 * 22 21 20 24 24 C 1.52995 * 109.47693 * 59.75899 * 19 16 14 25 25 H 0.97000 * 119.99928 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.46933 * 203.13807 * 10 9 7 27 27 H 1.08999 * 109.47159 * 323.14076 * 10 9 7 28 28 H 0.96700 * 116.99629 * 179.97438 * 13 11 10 29 29 H 0.96697 * 114.00370 * 300.00018 * 18 16 14 30 30 H 1.09000 * 109.47229 * 299.74950 * 19 16 14 31 31 H 1.08996 * 109.47315 * 59.99813 * 20 19 16 32 32 H 1.08994 * 109.47261 * 299.99364 * 20 19 16 33 33 H 1.09002 * 109.47273 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47301 * 300.00176 * 21 20 19 35 35 H 1.09002 * 109.46639 * 60.00018 * 22 21 20 36 36 H 1.08990 * 109.47203 * 179.97438 * 22 21 20 37 37 H 1.09002 * 109.47247 * 299.99362 * 23 22 21 38 38 H 1.08996 * 109.46962 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.46822 * 299.99775 * 24 19 16 40 40 H 1.08998 * 109.47072 * 59.99056 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0030 9 7 1.3234 -2.3906 0.0022 10 6 -0.1155 -2.4051 0.2773 11 6 -0.8719 -2.0915 -0.9880 12 8 -0.2707 -1.8784 -2.0141 13 8 -2.2134 -2.0501 -0.9749 14 6 1.9733 -3.5445 -0.2481 15 8 3.1781 -3.5438 -0.3888 16 6 1.2031 -4.8356 -0.3533 17 1 0.4429 -4.8697 0.4270 18 8 2.0980 -5.9383 -0.1949 19 6 0.5303 -4.9177 -1.7250 20 6 -0.2467 -6.2312 -1.8340 21 6 -0.9200 -6.3132 -3.2054 22 6 0.1463 -6.2589 -4.3013 23 6 0.9233 -4.9453 -4.1922 24 6 1.5970 -4.8638 -2.8204 25 1 -0.4850 0.8400 -0.0004 26 1 -0.4062 -3.3911 0.6395 27 1 -0.3482 -1.6566 1.0347 28 1 -2.6544 -1.8445 -1.8107 29 1 2.8023 -5.9715 -0.8567 30 1 -0.1556 -4.0790 -1.8440 31 1 -1.0066 -6.2697 -1.0536 32 1 0.4391 -7.0700 -1.7150 33 1 -1.4732 -7.2491 -3.2832 34 1 -1.6059 -5.4743 -3.3241 35 1 0.8322 -7.0977 -4.1825 36 1 -0.3333 -6.3177 -5.2782 37 1 0.2374 -4.1065 -4.3109 38 1 1.6833 -4.9069 -4.9725 39 1 2.1505 -3.9280 -2.7427 40 1 2.2829 -5.7025 -2.7013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:20 Heat of formation + Delta-G solvation = -202.365844 kcal Electronic energy + Delta-G solvation = -25161.989629 eV Core-core repulsion = 21554.683943 eV Total energy + Delta-G solvation = -3607.305686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72014 -40.35299 -39.17904 -37.35714 -36.64543 -36.18788 -33.86108 -32.23304 -31.63952 -29.62136 -28.22855 -26.10979 -23.64847 -22.86861 -22.66953 -20.96378 -20.60175 -19.04456 -18.81978 -18.34224 -17.67268 -17.33419 -16.61337 -16.46579 -16.17459 -15.83427 -15.58545 -15.13197 -14.92433 -14.80904 -14.57686 -13.81542 -13.70906 -13.54806 -13.21957 -13.12757 -12.98486 -12.76070 -12.68907 -12.42382 -12.28957 -12.19077 -11.98749 -11.98615 -11.72175 -11.47410 -11.30442 -11.13240 -10.96371 -10.86807 -10.15184 -9.97363 -8.39373 -6.01984 1.31588 1.37126 1.46601 1.71001 1.94054 2.19305 2.52928 2.91598 3.10791 3.37248 3.65292 3.72893 3.75094 3.93184 4.11668 4.29108 4.34316 4.40655 4.47624 4.58377 4.64844 4.68115 4.79242 4.91838 4.98618 5.05345 5.13833 5.21552 5.27881 5.30363 5.37418 5.37953 5.44668 5.59438 5.91278 6.04937 6.32856 6.56152 7.04749 7.27445 7.53730 7.82906 8.58159 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.006990 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.073274 B = 4004.977451 C = 4487.191392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.994 3.006 4 H -0.286 1.286 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.322 4.322 8 H 0.078 0.922 9 N -0.440 5.440 10 C 0.139 3.861 11 C 0.510 3.490 12 O -0.550 6.550 13 O -0.521 6.521 14 C 0.423 3.577 15 O -0.618 6.618 16 C 0.106 3.894 17 H 0.126 0.874 18 O -0.543 6.543 19 C -0.108 4.108 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.108 4.108 25 H 0.275 0.725 26 H 0.104 0.896 27 H 0.132 0.868 28 H 0.410 0.590 29 H 0.382 0.618 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -9.643 -3.778 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.818 3.182 4 H -0.212 1.212 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.450 4.450 8 H 0.096 0.904 9 N -0.160 5.160 10 C 0.014 3.986 11 C 0.353 3.647 12 O -0.440 6.440 13 O -0.332 6.332 14 C 0.213 3.787 15 O -0.504 6.504 16 C 0.043 3.957 17 H 0.143 0.857 18 O -0.349 6.349 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.146 4.146 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.150 0.850 28 H 0.269 0.731 29 H 0.232 0.768 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.315 -9.648 -3.228 12.531 hybrid contribution 0.738 1.849 -1.051 2.252 sum -6.577 -7.799 -4.279 11.063 Atomic orbital electron populations 1.69537 1.06201 1.28311 1.50448 1.25848 0.96663 1.01947 0.95265 0.84973 0.77795 0.76848 0.78569 1.21183 1.19330 1.19015 1.19670 0.92398 0.83553 1.49368 0.90363 1.43592 1.06507 1.05933 1.60011 1.21094 0.79725 1.03390 0.94358 1.23328 0.80048 0.70998 0.90339 1.90596 1.69882 1.47863 1.35694 1.84450 1.21534 1.83846 1.43416 1.21756 0.88732 0.87045 0.81150 1.90480 1.16326 1.87145 1.56467 1.21887 0.91048 0.83158 0.99565 0.85685 1.86428 1.44236 1.45612 1.58674 1.21773 0.97798 1.00633 0.92524 1.21504 0.99074 0.95277 0.98175 1.21535 0.97594 1.02372 0.93793 1.21520 0.97822 0.96348 0.99238 1.21454 0.99220 0.98643 0.95675 1.21420 0.97417 1.00130 0.95635 0.91411 0.87851 0.85031 0.73141 0.76827 0.91224 0.90816 0.90617 0.89573 0.92924 0.91001 0.90769 0.93898 0.91888 0.96035 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.17 7.81 21.66 0.17 -45.00 16 2 C 0.00 0.07 5.27 84.92 0.45 0.52 16 3 Si 0.99 43.09 29.55 68.60 2.03 45.11 16 4 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.32 -18.12 9.31 84.04 0.78 -17.34 16 8 H 0.08 4.73 7.21 -2.91 -0.02 4.71 16 9 N -0.44 -22.26 2.18 -639.59 -1.40 -23.66 16 10 C 0.14 5.96 5.01 85.63 0.43 6.39 16 11 C 0.51 21.56 4.26 71.24 0.30 21.87 16 12 O -0.55 -27.36 15.51 21.97 0.34 -27.02 16 13 O -0.52 -17.43 13.42 -51.38 -0.69 -18.12 16 14 C 0.42 20.62 5.69 87.66 0.50 21.11 16 15 O -0.62 -34.60 15.73 15.30 0.24 -34.36 16 16 C 0.11 3.92 2.45 29.85 0.07 3.99 16 17 H 0.13 4.10 6.25 -2.39 -0.01 4.08 16 18 O -0.54 -19.21 12.38 -130.61 -1.62 -20.83 16 19 C -0.11 -3.57 2.01 -10.79 -0.02 -3.59 16 20 C -0.10 -2.53 5.06 30.60 0.15 -2.38 16 21 C -0.12 -2.46 5.92 30.60 0.18 -2.28 16 22 C -0.11 -2.44 5.92 30.60 0.18 -2.26 16 23 C -0.11 -3.29 5.92 30.61 0.18 -3.11 16 24 C -0.11 -3.77 4.66 30.61 0.14 -3.63 16 25 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 26 H 0.10 3.55 5.77 -2.39 -0.01 3.54 16 27 H 0.13 5.95 6.24 -2.39 -0.01 5.94 16 28 H 0.41 10.33 9.10 -74.06 -0.67 9.66 16 29 H 0.38 12.81 6.96 -74.06 -0.52 12.29 16 30 H 0.07 2.59 4.43 -2.39 -0.01 2.58 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.79 7.68 -2.39 -0.02 1.77 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.02 0.95 7.06 -2.39 -0.02 0.93 16 40 H 0.07 2.19 6.78 -2.39 -0.02 2.17 16 Total: -1.00 -69.52 312.18 2.33 -67.19 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: -0.10 Total: 37.39 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 3.35 Total: 19.30 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.23 Total: -68.66 kcal Atomic # 8 Polarization: -98.60 SS G_CDS: -1.73 Total: -100.33 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -69.52 2.33 -67.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.173 kcal (2) G-P(sol) polarization free energy of solvation -69.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds