Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86790 * 120.00184 * 2 1 4 4 H 1.48507 * 109.47217 * 240.00222 * 3 2 1 5 5 H 1.48505 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47562 * 120.00112 * 3 2 1 7 7 C 1.38953 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99940 * 203.74055 * 7 2 1 9 9 N 1.37103 * 119.99964 * 23.46043 * 7 2 1 10 10 C 1.46494 * 120.00139 * 3.65152 * 9 7 2 11 11 C 1.50700 * 109.47521 * 274.92118 * 10 9 7 12 12 O 1.20831 * 119.99777 * 359.97438 * 11 10 9 13 13 O 1.34221 * 120.00352 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99554 * 183.65248 * 9 7 2 15 15 O 1.21284 * 120.00396 * 355.46018 * 14 9 7 16 16 C 1.50705 * 119.99549 * 175.46632 * 14 9 7 17 17 H 1.09001 * 109.47206 * 45.00610 * 16 14 9 18 18 O 1.42897 * 109.46789 * 165.00191 * 16 14 9 19 19 C 1.52995 * 109.47024 * 285.00227 * 16 14 9 20 20 C 1.53001 * 109.47071 * 301.23101 * 19 16 14 21 21 C 1.53006 * 109.47214 * 180.02562 * 20 19 16 22 22 C 1.52994 * 109.47094 * 60.00020 * 21 20 19 23 23 C 1.53001 * 109.47074 * 300.00066 * 22 21 20 24 24 C 1.53002 * 109.47320 * 60.00362 * 23 22 21 25 25 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47303 * 34.91880 * 10 9 7 27 27 H 1.08994 * 109.46980 * 154.91659 * 10 9 7 28 28 H 0.96700 * 117.00348 * 180.02562 * 13 11 10 29 29 H 0.96696 * 114.00181 * 59.99685 * 18 16 14 30 30 H 1.08996 * 109.47341 * 61.23245 * 19 16 14 31 31 H 1.09005 * 109.47251 * 300.00504 * 20 19 16 32 32 H 1.08997 * 109.47262 * 60.00347 * 20 19 16 33 33 H 1.09001 * 109.46722 * 299.99642 * 21 20 19 34 34 H 1.08998 * 109.46928 * 180.02562 * 21 20 19 35 35 H 1.09006 * 109.47342 * 180.02562 * 22 21 20 36 36 H 1.09005 * 109.46938 * 60.00083 * 22 21 20 37 37 H 1.08996 * 109.47155 * 300.00072 * 23 22 21 38 38 H 1.09007 * 109.47163 * 179.97438 * 23 22 21 39 39 H 1.08993 * 109.47437 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.47397 * 59.99552 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0203 -1.2432 0.3760 9 7 1.4083 -2.3414 -0.4738 10 6 0.0642 -2.2740 -1.0524 11 6 -0.9616 -2.3656 0.0477 12 8 -0.6063 -2.4764 1.1973 13 8 -2.2699 -2.3252 -0.2494 14 6 2.0546 -3.5222 -0.4065 15 8 3.1978 -3.5658 -0.0039 16 6 1.3567 -4.7884 -0.8318 17 1 0.8346 -4.6169 -1.7731 18 8 2.3210 -5.8287 -1.0047 19 6 0.3488 -5.2008 0.2429 20 6 1.0776 -5.4118 1.5715 21 6 0.0698 -5.8248 2.6461 22 6 -0.6162 -7.1269 2.2283 23 6 -1.3450 -6.9160 0.8997 24 6 -0.3372 -6.5030 -0.1749 25 1 -0.4850 0.8400 0.0004 26 1 -0.0559 -1.3296 -1.5833 27 1 -0.0739 -3.1018 -1.7478 28 1 -2.8902 -2.3870 0.4899 29 1 2.8246 -6.0350 -0.2055 30 1 -0.3993 -4.4167 0.3593 31 1 1.8259 -6.1958 1.4550 32 1 1.5667 -4.4842 1.8689 33 1 -0.6786 -5.0409 2.7627 34 1 0.5889 -5.9746 3.5927 35 1 -1.3346 -7.4210 2.9937 36 1 0.1323 -7.9107 2.1117 37 1 -2.0934 -6.1322 1.0163 38 1 -1.8334 -7.8439 0.6018 39 1 -0.8563 -6.3532 -1.1215 40 1 0.4113 -7.2868 -0.2915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -180.733724 kcal Electronic energy + Delta-G solvation = -25201.648245 eV Core-core repulsion = 21595.280598 eV Total energy + Delta-G solvation = -3606.367647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12812 -38.74561 -37.65933 -35.80040 -35.04470 -34.41095 -32.03112 -30.85679 -30.46323 -27.84443 -26.66242 -24.34046 -22.42875 -21.49133 -21.12015 -19.42282 -19.23036 -17.15989 -17.13767 -16.67697 -16.11264 -15.67817 -15.10587 -14.85373 -14.59425 -14.27868 -14.00291 -13.93792 -13.54410 -13.22386 -12.92362 -12.33365 -12.13728 -11.94206 -11.82993 -11.75605 -11.57782 -11.16184 -11.00270 -10.95925 -10.74559 -10.56312 -10.52784 -10.43268 -10.31098 -9.93206 -9.83904 -9.62109 -9.60421 -9.05690 -8.35601 -8.06837 -6.54627 -3.90793 3.10807 3.20323 3.24924 3.41683 3.59617 3.97809 4.19055 4.61939 4.79079 4.90395 4.95256 5.01829 5.10733 5.34779 5.41827 5.57304 5.61885 5.70052 5.77561 5.79409 5.84238 5.89304 6.01632 6.13286 6.22979 6.36064 6.40470 6.44060 6.47210 6.53848 6.60550 6.76388 6.79566 7.46085 7.51729 7.80926 8.03399 8.29099 9.00408 9.03366 9.23632 9.73300 10.53120 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.006980 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.129077 B = 4010.545905 C = 4585.917843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.110 0.890 9 N -0.426 5.426 10 C 0.139 3.861 11 C 0.497 3.503 12 O -0.501 6.501 13 O -0.535 6.535 14 C 0.431 3.569 15 O -0.574 6.574 16 C 0.096 3.904 17 H 0.105 0.895 18 O -0.545 6.545 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.109 4.109 25 H 0.273 0.727 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.390 0.610 29 H 0.377 0.623 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 -8.833 -0.763 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.171 4.171 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.427 4.427 8 H 0.128 0.872 9 N -0.146 5.146 10 C 0.013 3.987 11 C 0.338 3.662 12 O -0.387 6.387 13 O -0.346 6.346 14 C 0.219 3.781 15 O -0.458 6.458 16 C 0.034 3.966 17 H 0.122 0.878 18 O -0.351 6.351 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.146 4.146 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.092 0.908 28 H 0.247 0.753 29 H 0.226 0.774 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.740 -8.700 -1.167 10.488 hybrid contribution -0.150 1.099 1.194 1.629 sum -5.890 -7.601 0.027 9.616 Atomic orbital electron populations 1.69661 1.06088 1.28079 1.48675 1.25159 0.95293 0.99940 0.96716 0.85916 0.79043 0.80121 0.79214 1.19800 1.20983 1.19845 1.19725 0.99464 0.83748 1.39718 0.87201 1.43562 1.11514 1.07151 1.52406 1.20995 0.81158 1.04584 0.91986 1.23528 0.81076 0.70296 0.91255 1.90612 1.80557 1.45279 1.22242 1.84527 1.19001 1.86920 1.44142 1.20711 0.88321 0.84655 0.84385 1.90526 1.18225 1.85689 1.51340 1.21853 0.88988 0.86664 0.99120 0.87783 1.86441 1.53871 1.54370 1.40405 1.21890 0.98010 0.98620 0.95071 1.21449 0.97383 1.01814 0.94039 1.21461 0.98702 0.97090 0.97951 1.21540 0.99212 0.97911 0.96844 1.21518 0.97977 1.00698 0.95283 1.21508 0.98076 0.97295 0.97730 0.91606 0.85001 0.90834 0.75336 0.77393 0.89420 0.92686 0.90756 0.91680 0.92497 0.92627 0.92286 0.92257 0.92398 0.92260 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.21 8.58 55.50 0.48 -21.74 16 2 C 0.03 0.78 5.02 -17.47 -0.09 0.69 16 3 Si 0.93 20.33 29.61 -169.99 -5.03 15.30 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.09 9.35 -14.93 -0.14 -8.23 16 8 H 0.11 3.15 7.27 -52.49 -0.38 2.77 16 9 N -0.43 -10.43 2.15 -116.10 -0.25 -10.68 16 10 C 0.14 2.96 4.94 -5.20 -0.03 2.93 16 11 C 0.50 10.51 4.16 36.01 0.15 10.66 16 12 O -0.50 -12.11 15.64 -18.75 -0.29 -12.41 16 13 O -0.53 -9.31 13.42 -39.23 -0.53 -9.83 16 14 C 0.43 10.19 5.62 -10.98 -0.06 10.13 16 15 O -0.57 -15.40 15.83 -13.90 -0.22 -15.62 16 16 C 0.10 1.82 2.44 -27.88 -0.07 1.75 16 17 H 0.10 1.80 6.43 -51.93 -0.33 1.47 16 18 O -0.55 -9.97 12.32 -54.68 -0.67 -10.65 16 19 C -0.12 -1.98 2.00 -90.62 -0.18 -2.16 16 20 C -0.11 -1.90 4.66 -26.73 -0.12 -2.03 16 21 C -0.11 -1.73 5.92 -26.73 -0.16 -1.89 16 22 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 23 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 24 C -0.11 -1.51 5.05 -26.73 -0.13 -1.64 16 25 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.13 2.94 6.26 -51.93 -0.32 2.61 16 27 H 0.07 1.30 5.90 -51.93 -0.31 0.99 16 28 H 0.39 5.24 9.10 45.56 0.41 5.66 16 29 H 0.38 6.43 7.02 45.56 0.32 6.75 16 30 H 0.09 1.63 3.77 -51.93 -0.20 1.43 16 31 H 0.05 0.87 6.80 -51.93 -0.35 0.52 16 32 H 0.07 1.61 7.13 -51.93 -0.37 1.24 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 LS Contribution 312.51 15.07 4.71 4.71 Total: -1.00 -31.16 312.51 -6.98 -38.15 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -4.02 Total: 15.80 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -1.15 Total: 6.96 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.23 Total: -32.42 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.71 Total: -48.50 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.16 -6.98 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.587 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds