Wall clock time and date at job start Tue Mar 31 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86790 * 120.00184 * 2 1 4 4 H 1.48507 * 109.47217 * 240.00222 * 3 2 1 5 5 H 1.48505 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47562 * 120.00112 * 3 2 1 7 7 C 1.38953 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99940 * 203.74055 * 7 2 1 9 9 N 1.37103 * 119.99964 * 23.46043 * 7 2 1 10 10 C 1.46494 * 120.00139 * 3.65152 * 9 7 2 11 11 C 1.50700 * 109.47521 * 274.92118 * 10 9 7 12 12 O 1.20831 * 119.99777 * 359.97438 * 11 10 9 13 13 O 1.34221 * 120.00352 * 180.02562 * 11 10 9 14 14 C 1.34777 * 119.99554 * 183.65248 * 9 7 2 15 15 O 1.21284 * 120.00396 * 355.46018 * 14 9 7 16 16 C 1.50705 * 119.99549 * 175.46632 * 14 9 7 17 17 H 1.09001 * 109.47206 * 45.00610 * 16 14 9 18 18 O 1.42897 * 109.46789 * 165.00191 * 16 14 9 19 19 C 1.52995 * 109.47024 * 285.00227 * 16 14 9 20 20 C 1.53001 * 109.47071 * 301.23101 * 19 16 14 21 21 C 1.53006 * 109.47214 * 180.02562 * 20 19 16 22 22 C 1.52994 * 109.47094 * 60.00020 * 21 20 19 23 23 C 1.53001 * 109.47074 * 300.00066 * 22 21 20 24 24 C 1.53002 * 109.47320 * 60.00362 * 23 22 21 25 25 H 0.96998 * 119.99928 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47303 * 34.91880 * 10 9 7 27 27 H 1.08994 * 109.46980 * 154.91659 * 10 9 7 28 28 H 0.96700 * 117.00348 * 180.02562 * 13 11 10 29 29 H 0.96696 * 114.00181 * 59.99685 * 18 16 14 30 30 H 1.08996 * 109.47341 * 61.23245 * 19 16 14 31 31 H 1.09005 * 109.47251 * 300.00504 * 20 19 16 32 32 H 1.08997 * 109.47262 * 60.00347 * 20 19 16 33 33 H 1.09001 * 109.46722 * 299.99642 * 21 20 19 34 34 H 1.08998 * 109.46928 * 180.02562 * 21 20 19 35 35 H 1.09006 * 109.47342 * 180.02562 * 22 21 20 36 36 H 1.09005 * 109.46938 * 60.00083 * 22 21 20 37 37 H 1.08996 * 109.47155 * 300.00072 * 23 22 21 38 38 H 1.09007 * 109.47163 * 179.97438 * 23 22 21 39 39 H 1.08993 * 109.47437 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.47397 * 59.99552 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0203 -1.2432 0.3760 9 7 1.4083 -2.3414 -0.4738 10 6 0.0642 -2.2740 -1.0524 11 6 -0.9616 -2.3656 0.0477 12 8 -0.6063 -2.4764 1.1973 13 8 -2.2699 -2.3252 -0.2494 14 6 2.0546 -3.5222 -0.4065 15 8 3.1978 -3.5658 -0.0039 16 6 1.3567 -4.7884 -0.8318 17 1 0.8346 -4.6169 -1.7731 18 8 2.3210 -5.8287 -1.0047 19 6 0.3488 -5.2008 0.2429 20 6 1.0776 -5.4118 1.5715 21 6 0.0698 -5.8248 2.6461 22 6 -0.6162 -7.1269 2.2283 23 6 -1.3450 -6.9160 0.8997 24 6 -0.3372 -6.5030 -0.1749 25 1 -0.4850 0.8400 0.0004 26 1 -0.0559 -1.3296 -1.5833 27 1 -0.0739 -3.1018 -1.7478 28 1 -2.8902 -2.3870 0.4899 29 1 2.8246 -6.0350 -0.2055 30 1 -0.3993 -4.4167 0.3593 31 1 1.8259 -6.1958 1.4550 32 1 1.5667 -4.4842 1.8689 33 1 -0.6786 -5.0409 2.7627 34 1 0.5889 -5.9746 3.5927 35 1 -1.3346 -7.4210 2.9937 36 1 0.1323 -7.9107 2.1117 37 1 -2.0934 -6.1322 1.0163 38 1 -1.8334 -7.8439 0.6018 39 1 -0.8563 -6.3532 -1.1215 40 1 0.4113 -7.2868 -0.2915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:25 Heat of formation + Delta-G solvation = -202.192378 kcal Electronic energy + Delta-G solvation = -25202.578762 eV Core-core repulsion = 21595.280598 eV Total energy + Delta-G solvation = -3607.298164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76157 -40.32901 -39.17669 -37.35282 -36.63829 -36.21036 -33.90835 -32.22959 -31.63456 -29.60475 -28.24964 -26.11055 -23.64259 -22.85734 -22.70091 -20.94114 -20.61781 -19.01395 -18.80385 -18.35299 -17.66479 -17.33965 -16.68293 -16.47773 -16.19971 -15.78313 -15.61367 -15.11830 -14.90741 -14.80442 -14.55569 -13.77313 -13.69917 -13.51726 -13.45548 -13.16940 -12.99446 -12.72447 -12.64403 -12.40616 -12.30305 -12.16074 -11.99052 -11.97388 -11.69437 -11.45214 -11.26667 -11.12280 -10.92903 -10.85608 -10.14466 -9.97720 -8.49351 -5.92869 1.32519 1.40124 1.50026 1.70998 1.88617 2.20907 2.51946 2.85996 3.08600 3.37156 3.65786 3.70688 3.75996 3.93428 4.11255 4.26909 4.34803 4.40995 4.47466 4.59045 4.65541 4.68007 4.79269 4.81648 4.95851 4.99192 5.14308 5.21835 5.28490 5.31007 5.38585 5.42344 5.45477 5.59937 5.89936 6.02837 6.32574 6.56190 7.05805 7.28219 7.51233 7.85826 8.55581 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020688 B = 0.006980 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.129077 B = 4010.545905 C = 4585.917843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.006 3.994 3 Si 0.988 3.012 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.436 5.436 10 C 0.135 3.865 11 C 0.506 3.494 12 O -0.537 6.537 13 O -0.521 6.521 14 C 0.419 3.581 15 O -0.620 6.620 16 C 0.106 3.894 17 H 0.126 0.874 18 O -0.543 6.543 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.103 4.103 25 H 0.278 0.722 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.411 0.589 29 H 0.381 0.619 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.019 0.981 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 -10.041 -1.654 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.196 4.196 3 Si 0.812 3.188 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.467 4.467 8 H 0.094 0.906 9 N -0.155 5.155 10 C 0.009 3.991 11 C 0.349 3.651 12 O -0.426 6.426 13 O -0.333 6.333 14 C 0.210 3.790 15 O -0.507 6.507 16 C 0.043 3.957 17 H 0.144 0.856 18 O -0.349 6.349 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.141 4.141 25 H 0.088 0.912 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.271 0.729 29 H 0.231 0.769 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.807 -9.910 -2.077 12.786 hybrid contribution 0.434 1.493 1.499 2.160 sum -7.373 -8.417 -0.578 11.205 Atomic orbital electron populations 1.69733 1.06525 1.28860 1.47495 1.25809 0.96159 1.01955 0.95651 0.85079 0.78070 0.76910 0.78741 1.19277 1.19344 1.20845 1.19550 0.98949 0.85872 1.42333 0.90552 1.43653 1.12802 1.06852 1.52221 1.21087 0.79901 1.05628 0.92440 1.23346 0.82029 0.69356 0.90403 1.90616 1.81396 1.47021 1.23601 1.84446 1.17746 1.86130 1.44963 1.21690 0.87974 0.85967 0.83403 1.90477 1.20319 1.86576 1.53302 1.21882 0.89000 0.84208 1.00563 0.85629 1.86422 1.53963 1.53692 1.40836 1.21840 0.97029 1.00126 0.93948 1.21377 0.98134 0.99496 0.95338 1.21429 0.97766 0.98217 0.97473 1.21522 0.99691 0.96126 0.97590 1.21530 0.97403 1.01824 0.94485 1.21507 0.98437 0.95162 0.98951 0.91201 0.86012 0.87065 0.72947 0.76898 0.90873 0.91449 0.96199 0.93794 0.92148 0.90784 0.91107 0.92806 0.89592 0.90728 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.37 8.58 21.66 0.19 -44.18 16 2 C 0.01 0.30 5.02 84.93 0.43 0.72 16 3 Si 0.99 42.09 29.61 68.60 2.03 44.12 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.34 -19.13 9.35 84.04 0.79 -18.34 16 8 H 0.08 4.70 7.27 -2.91 -0.02 4.68 16 9 N -0.44 -21.94 2.15 -639.62 -1.38 -23.31 16 10 C 0.13 5.67 4.94 85.63 0.42 6.09 16 11 C 0.51 21.04 4.16 71.24 0.30 21.33 16 12 O -0.54 -26.33 15.64 21.95 0.34 -25.99 16 13 O -0.52 -16.99 13.42 -51.33 -0.69 -17.68 16 14 C 0.42 20.47 5.62 87.66 0.49 20.97 16 15 O -0.62 -35.05 15.83 15.56 0.25 -34.81 16 16 C 0.11 3.92 2.44 29.85 0.07 3.99 16 17 H 0.13 4.06 6.43 -2.39 -0.02 4.05 16 18 O -0.54 -19.32 12.32 -130.38 -1.61 -20.93 16 19 C -0.11 -3.63 2.00 -10.79 -0.02 -3.65 16 20 C -0.11 -3.73 4.66 30.60 0.14 -3.59 16 21 C -0.11 -3.32 5.92 30.59 0.18 -3.14 16 22 C -0.11 -2.47 5.92 30.59 0.18 -2.29 16 23 C -0.12 -2.44 5.92 30.60 0.18 -2.26 16 24 C -0.10 -2.53 5.05 30.60 0.15 -2.37 16 25 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 26 H 0.12 5.37 6.26 -2.39 -0.01 5.36 16 27 H 0.11 3.72 5.90 -2.39 -0.01 3.71 16 28 H 0.41 10.06 9.10 -74.06 -0.67 9.39 16 29 H 0.38 12.94 7.02 -74.06 -0.52 12.42 16 30 H 0.07 2.66 3.77 -2.39 -0.01 2.65 16 31 H 0.07 2.14 6.80 -2.38 -0.02 2.12 16 32 H 0.02 0.89 7.13 -2.39 -0.02 0.87 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.77 7.65 -2.38 -0.02 1.75 16 Total: -1.00 -70.29 312.51 2.35 -67.95 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.11 Total: 37.37 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 3.32 Total: 17.47 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -1.19 Total: -67.50 kcal Atomic # 8 Polarization: -97.70 SS G_CDS: -1.71 Total: -99.41 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -70.29 2.35 -67.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.243 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds