Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00201 * 2 1 4 4 H 1.48495 * 109.47187 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.46925 * 30.00175 * 3 2 1 6 6 H 1.48499 * 109.47377 * 149.99815 * 3 2 1 7 7 C 1.38956 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00269 * 258.66477 * 7 2 1 9 9 N 1.37095 * 119.99583 * 78.65678 * 7 2 1 10 10 C 1.46506 * 119.99866 * 138.20194 * 9 7 2 11 11 C 1.53000 * 109.47055 * 288.26875 * 10 9 7 12 12 C 1.50700 * 109.46874 * 186.55334 * 11 10 9 13 13 O 1.20827 * 119.99974 * 359.97438 * 12 11 10 14 14 O 1.34224 * 120.00130 * 179.97438 * 12 11 10 15 15 C 1.34777 * 120.00133 * 318.20462 * 9 7 2 16 16 O 1.21285 * 120.00274 * 17.96681 * 15 9 7 17 17 C 1.50709 * 119.99767 * 197.96391 * 15 9 7 18 18 C 1.53001 * 109.46645 * 151.60624 * 17 15 9 19 19 C 1.53003 * 109.46516 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.47432 * 300.00179 * 19 18 17 21 21 O 1.42898 * 109.47336 * 180.02562 * 20 19 18 22 22 C 1.52990 * 109.47377 * 60.00074 * 20 19 18 23 23 C 1.52994 * 109.47325 * 271.60816 * 17 15 9 24 24 H 0.97000 * 119.99565 * 4.91731 * 1 2 3 25 25 H 1.09001 * 109.46462 * 48.26721 * 10 9 7 26 26 H 1.08996 * 109.46822 * 168.26548 * 10 9 7 27 27 H 1.09001 * 109.46714 * 306.54855 * 11 10 9 28 28 H 1.08998 * 109.47278 * 66.55246 * 11 10 9 29 29 H 0.96694 * 117.00503 * 179.97438 * 14 12 11 30 30 H 1.09002 * 109.46828 * 31.61135 * 17 15 9 31 31 H 1.09002 * 109.47090 * 60.00672 * 18 17 15 32 32 H 1.08995 * 109.47687 * 300.00151 * 18 17 15 33 33 H 1.09005 * 109.46708 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47374 * 60.00545 * 19 18 17 35 35 H 1.09002 * 109.47428 * 300.00044 * 20 19 18 36 36 H 0.96699 * 114.00228 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47335 * 59.99875 * 22 20 19 38 38 H 1.09003 * 109.47963 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.47139 * 300.00418 * 23 17 15 40 40 H 1.09002 * 109.47320 * 59.99794 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 2.4382 -1.5787 0.9177 9 7 2.1495 -1.9142 -1.1633 10 6 3.4327 -2.5421 -1.4877 11 6 4.4485 -1.4617 -1.8640 12 6 5.7171 -2.1129 -2.3517 13 8 5.8003 -3.3176 -2.3934 14 8 6.7545 -1.3547 -2.7397 15 6 1.1071 -2.0353 -2.0090 16 8 0.1668 -1.2737 -1.9256 17 6 1.1099 -3.1170 -3.0584 18 6 -0.3310 -3.5163 -3.3829 19 6 -0.3281 -4.6141 -4.4487 20 6 0.3545 -4.0936 -5.7152 21 8 0.3567 -5.1187 -6.7108 22 6 1.7953 -3.6943 -5.3906 23 6 1.7927 -2.5972 -4.3249 24 1 -0.4849 0.8370 -0.0720 25 1 3.7953 -3.0959 -0.6217 26 1 3.3011 -3.2252 -2.3268 27 1 4.0355 -0.8341 -2.6538 28 1 4.6676 -0.8486 -0.9898 29 1 7.5469 -1.8175 -3.0443 30 1 1.6519 -3.9853 -2.6836 31 1 -0.8730 -2.6480 -3.7577 32 1 -0.8175 -3.8867 -2.4806 33 1 -1.3547 -4.8982 -4.6803 34 1 0.2140 -5.4825 -4.0745 35 1 -0.1876 -3.2252 -6.0895 36 1 0.7752 -4.8582 -7.5426 37 1 2.3375 -4.5626 -5.0163 38 1 2.2816 -3.3231 -6.2927 39 1 1.2508 -1.7288 -4.6996 40 1 2.8192 -2.3126 -4.0937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = -163.310147 kcal Electronic energy + Delta-G solvation = -24045.785783 eV Core-core repulsion = 20440.173679 eV Total energy + Delta-G solvation = -3605.612104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.08413 -39.37467 -37.74355 -36.02286 -35.20282 -34.44334 -32.61245 -30.58918 -30.27265 -29.35737 -25.29466 -24.01317 -22.49084 -22.26613 -20.67661 -19.98371 -18.79539 -17.93379 -17.14142 -16.78376 -16.43276 -15.84217 -15.34476 -15.14244 -14.40975 -14.37529 -14.16605 -13.82746 -13.42839 -13.16079 -12.88700 -12.63559 -12.38369 -12.12539 -12.01980 -11.95168 -11.51898 -11.36841 -11.25360 -10.96967 -10.94111 -10.71935 -10.57552 -10.49540 -10.34705 -10.20334 -10.06318 -9.94253 -9.60978 -8.75315 -7.54234 -7.41272 -6.74165 -3.50042 2.43158 3.20803 3.31123 3.46418 3.52031 4.11264 4.23585 4.34004 4.60065 4.85532 4.93023 4.98719 5.28921 5.35529 5.45516 5.49031 5.51684 5.65319 5.71371 5.74008 5.84308 5.87123 6.01978 6.09129 6.17257 6.23052 6.29351 6.35862 6.42198 6.44768 6.55653 6.66035 6.77478 6.80688 7.42401 7.65857 8.07815 8.31895 8.99272 9.29158 9.61962 10.29370 10.32005 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012572 B = 0.007301 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.568213 B = 3834.290909 C = 5530.661295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C 0.184 3.816 3 Si 0.755 3.245 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.501 4.501 8 H 0.089 0.911 9 N -0.448 5.448 10 C 0.127 3.873 11 C -0.127 4.127 12 C 0.482 3.518 13 O -0.522 6.522 14 O -0.521 6.521 15 C 0.456 3.544 16 O -0.524 6.524 17 C -0.110 4.110 18 C -0.092 4.092 19 C -0.110 4.110 20 C 0.104 3.896 21 O -0.572 6.572 22 C -0.147 4.147 23 C -0.106 4.106 24 H 0.268 0.732 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.402 0.598 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.373 0.627 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 -4.875 -9.885 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.263 5.263 2 C -0.048 4.048 3 Si 0.572 3.428 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.615 4.615 8 H 0.106 0.894 9 N -0.171 5.171 10 C 0.002 3.998 11 C -0.166 4.166 12 C 0.325 3.675 13 O -0.411 6.411 14 O -0.332 6.332 15 C 0.245 3.755 16 O -0.402 6.402 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.148 4.148 20 C 0.046 3.954 21 O -0.377 6.377 22 C -0.185 4.185 23 C -0.144 4.144 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.134 0.866 29 H 0.260 0.740 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.219 0.781 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.373 -4.950 -9.128 11.266 hybrid contribution 1.648 1.166 -0.744 2.151 sum 6.021 -3.784 -9.872 12.166 Atomic orbital electron populations 1.71082 1.10206 1.29567 1.15472 1.25064 0.92095 0.98279 0.89324 0.88575 0.86127 0.88996 0.79053 1.20131 1.21634 1.18832 1.17821 1.50479 1.05815 0.87430 0.89395 1.42962 1.05293 1.49320 1.19527 1.21201 0.85130 0.93001 1.00444 1.21918 0.89071 1.01601 1.03962 1.23949 0.84963 0.85776 0.72845 1.90684 1.82641 1.16285 1.51471 1.84613 1.26248 1.45118 1.77250 1.20287 0.83410 0.86981 0.84871 1.90649 1.35963 1.43491 1.70127 1.21448 0.97225 0.99089 0.95456 1.21238 0.95889 0.97916 0.97967 1.21520 1.00536 0.99164 0.93540 1.21884 0.95171 0.89579 0.88810 1.86508 1.82929 1.41988 1.26306 1.22242 0.97291 0.99751 0.99240 1.21469 1.00774 0.97886 0.94315 0.92002 0.91857 0.90907 0.88175 0.86570 0.74003 0.90448 0.90947 0.91087 0.91545 0.91484 0.92790 0.78077 0.91113 0.92139 0.91522 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.91 11.35 55.50 0.63 -17.28 16 2 C 0.18 4.92 4.35 -17.47 -0.08 4.84 16 3 Si 0.75 18.22 29.69 -169.99 -5.05 13.17 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.50 -13.22 8.91 -14.93 -0.13 -13.36 16 8 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 9 N -0.45 -10.49 2.69 -114.81 -0.31 -10.80 16 10 C 0.13 2.42 4.45 -4.04 -0.02 2.40 16 11 C -0.13 -2.15 5.84 -27.88 -0.16 -2.31 16 12 C 0.48 7.27 8.33 36.01 0.30 7.57 16 13 O -0.52 -8.90 16.64 -18.75 -0.31 -9.22 16 14 O -0.52 -6.34 13.42 -39.24 -0.53 -6.87 16 15 C 0.46 10.69 6.52 -10.98 -0.07 10.62 16 16 O -0.52 -14.31 12.77 5.55 0.07 -14.24 16 17 C -0.11 -2.00 1.66 -91.77 -0.15 -2.15 16 18 C -0.09 -1.57 4.78 -26.73 -0.13 -1.70 16 19 C -0.11 -1.57 5.57 -26.73 -0.15 -1.72 16 20 C 0.10 1.36 3.47 -26.74 -0.09 1.27 16 21 O -0.57 -7.08 13.32 -35.23 -0.47 -7.55 16 22 C -0.15 -1.90 5.54 -26.76 -0.15 -2.05 16 23 C -0.11 -1.66 4.93 -26.76 -0.13 -1.79 16 24 H 0.27 6.94 8.32 -40.82 -0.34 6.60 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.28 4.59 -51.93 -0.24 1.04 16 27 H 0.10 1.69 8.13 -51.93 -0.42 1.27 16 28 H 0.12 2.05 8.10 -51.93 -0.42 1.63 16 29 H 0.40 2.94 9.10 45.56 0.41 3.36 16 30 H 0.08 1.35 6.88 -51.93 -0.36 1.00 16 31 H 0.07 1.32 7.86 -51.93 -0.41 0.91 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.37 2.97 9.08 45.56 0.41 3.38 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.99 6.83 -51.93 -0.35 0.64 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -32.67 327.61 -6.30 -38.98 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.31 Total: 7.25 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.96 Total: 1.63 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 0.32 Total: -28.08 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.24 Total: -37.88 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.05 Total: 13.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.67 -6.30 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.335 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds