Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 120.00201 * 2 1 4 4 H 1.48495 * 109.47187 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.46925 * 30.00175 * 3 2 1 6 6 H 1.48499 * 109.47377 * 149.99815 * 3 2 1 7 7 C 1.38956 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00269 * 258.66477 * 7 2 1 9 9 N 1.37095 * 119.99583 * 78.65678 * 7 2 1 10 10 C 1.46506 * 119.99866 * 138.20194 * 9 7 2 11 11 C 1.53000 * 109.47055 * 288.26875 * 10 9 7 12 12 C 1.50700 * 109.46874 * 186.55334 * 11 10 9 13 13 O 1.20827 * 119.99974 * 359.97438 * 12 11 10 14 14 O 1.34224 * 120.00130 * 179.97438 * 12 11 10 15 15 C 1.34777 * 120.00133 * 318.20462 * 9 7 2 16 16 O 1.21285 * 120.00274 * 17.96681 * 15 9 7 17 17 C 1.50709 * 119.99767 * 197.96391 * 15 9 7 18 18 C 1.53001 * 109.46645 * 151.60624 * 17 15 9 19 19 C 1.53003 * 109.46516 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.47432 * 300.00179 * 19 18 17 21 21 O 1.42898 * 109.47336 * 180.02562 * 20 19 18 22 22 C 1.52990 * 109.47377 * 60.00074 * 20 19 18 23 23 C 1.52994 * 109.47325 * 271.60816 * 17 15 9 24 24 H 0.97000 * 119.99565 * 4.91731 * 1 2 3 25 25 H 1.09001 * 109.46462 * 48.26721 * 10 9 7 26 26 H 1.08996 * 109.46822 * 168.26548 * 10 9 7 27 27 H 1.09001 * 109.46714 * 306.54855 * 11 10 9 28 28 H 1.08998 * 109.47278 * 66.55246 * 11 10 9 29 29 H 0.96694 * 117.00503 * 179.97438 * 14 12 11 30 30 H 1.09002 * 109.46828 * 31.61135 * 17 15 9 31 31 H 1.09002 * 109.47090 * 60.00672 * 18 17 15 32 32 H 1.08995 * 109.47687 * 300.00151 * 18 17 15 33 33 H 1.09005 * 109.46708 * 180.02562 * 19 18 17 34 34 H 1.09002 * 109.47374 * 60.00545 * 19 18 17 35 35 H 1.09002 * 109.47428 * 300.00044 * 20 19 18 36 36 H 0.96699 * 114.00228 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47335 * 59.99875 * 22 20 19 38 38 H 1.09003 * 109.47963 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.47139 * 300.00418 * 23 17 15 40 40 H 1.09002 * 109.47320 * 59.99794 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 2.4382 -1.5787 0.9177 9 7 2.1495 -1.9142 -1.1633 10 6 3.4327 -2.5421 -1.4877 11 6 4.4485 -1.4617 -1.8640 12 6 5.7171 -2.1129 -2.3517 13 8 5.8003 -3.3176 -2.3934 14 8 6.7545 -1.3547 -2.7397 15 6 1.1071 -2.0353 -2.0090 16 8 0.1668 -1.2737 -1.9256 17 6 1.1099 -3.1170 -3.0584 18 6 -0.3310 -3.5163 -3.3829 19 6 -0.3281 -4.6141 -4.4487 20 6 0.3545 -4.0936 -5.7152 21 8 0.3567 -5.1187 -6.7108 22 6 1.7953 -3.6943 -5.3906 23 6 1.7927 -2.5972 -4.3249 24 1 -0.4849 0.8370 -0.0720 25 1 3.7953 -3.0959 -0.6217 26 1 3.3011 -3.2252 -2.3268 27 1 4.0355 -0.8341 -2.6538 28 1 4.6676 -0.8486 -0.9898 29 1 7.5469 -1.8175 -3.0443 30 1 1.6519 -3.9853 -2.6836 31 1 -0.8730 -2.6480 -3.7577 32 1 -0.8175 -3.8867 -2.4806 33 1 -1.3547 -4.8982 -4.6803 34 1 0.2140 -5.4825 -4.0745 35 1 -0.1876 -3.2252 -6.0895 36 1 0.7752 -4.8582 -7.5426 37 1 2.3375 -4.5626 -5.0163 38 1 2.2816 -3.3231 -6.2927 39 1 1.2508 -1.7288 -4.6996 40 1 2.8192 -2.3126 -4.0937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = -187.350062 kcal Electronic energy + Delta-G solvation = -24046.828232 eV Core-core repulsion = 20440.173679 eV Total energy + Delta-G solvation = -3606.654553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35440 -40.77748 -39.10693 -37.16910 -36.50230 -36.08431 -34.55670 -31.83403 -31.79924 -30.67664 -27.08540 -25.49939 -23.77616 -23.60270 -21.97314 -21.35017 -20.37433 -19.14633 -18.51884 -18.12300 -17.82400 -17.13008 -16.76696 -16.58926 -16.33598 -15.81047 -15.50905 -15.32522 -14.74661 -14.57515 -14.30643 -14.11598 -14.00380 -13.58487 -13.34623 -13.20345 -13.07435 -12.90673 -12.50793 -12.49242 -12.40016 -12.21477 -12.07496 -12.01319 -11.93510 -11.60505 -11.54672 -11.09669 -10.74383 -10.66094 -9.41516 -9.37156 -8.77583 -5.50752 1.23700 1.32388 1.50755 1.54783 2.02417 2.36765 2.40322 2.63441 3.18769 3.41276 3.72014 3.79925 3.99638 4.06407 4.10443 4.20358 4.28924 4.38303 4.45057 4.53029 4.53204 4.56487 4.68661 4.82677 4.91890 4.97065 5.05300 5.07019 5.12833 5.20241 5.22076 5.38229 5.42399 5.47911 5.64158 6.31581 6.93732 7.02707 7.06690 7.38245 7.72921 8.29538 8.46050 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012572 B = 0.007301 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.568213 B = 3834.290909 C = 5530.661295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.681 5.681 2 C 0.157 3.843 3 Si 0.820 3.180 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.072 0.928 9 N -0.458 5.458 10 C 0.130 3.870 11 C -0.123 4.123 12 C 0.499 3.501 13 O -0.542 6.542 14 O -0.512 6.512 15 C 0.441 3.559 16 O -0.573 6.573 17 C -0.101 4.101 18 C -0.086 4.086 19 C -0.105 4.105 20 C 0.109 3.891 21 O -0.580 6.580 22 C -0.137 4.137 23 C -0.101 4.101 24 H 0.272 0.728 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.428 0.572 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.394 0.606 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.793 -5.162 -11.857 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.300 5.300 2 C -0.074 4.074 3 Si 0.639 3.361 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.177 1.177 7 C -0.644 4.644 8 H 0.089 0.911 9 N -0.180 5.180 10 C 0.006 3.994 11 C -0.162 4.162 12 C 0.342 3.658 13 O -0.432 6.432 14 O -0.326 6.326 15 C 0.231 3.769 16 O -0.455 6.455 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.142 4.142 20 C 0.050 3.950 21 O -0.389 6.389 22 C -0.175 4.175 23 C -0.139 4.139 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.289 0.711 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.244 0.756 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.417 -5.230 -11.115 13.859 hybrid contribution 1.039 1.230 -0.110 1.614 sum 7.456 -4.000 -11.225 14.057 Atomic orbital electron populations 1.71094 1.11617 1.30383 1.16870 1.25582 0.92215 1.00782 0.88844 0.87611 0.84884 0.85044 0.78553 1.20662 1.21633 1.17694 1.17795 1.51108 1.07207 0.88331 0.91060 1.43148 1.07054 1.49082 1.18688 1.21213 0.83760 0.93579 1.00815 1.21670 0.89948 1.00715 1.03887 1.23253 0.84949 0.85115 0.72475 1.90690 1.83077 1.16997 1.52486 1.84528 1.26656 1.44755 1.76621 1.21149 0.82599 0.87401 0.85714 1.90612 1.37457 1.45439 1.71947 1.21357 0.98381 0.97288 0.95210 1.21133 0.94848 0.98220 0.98194 1.21424 1.01402 0.97924 0.93457 1.21719 0.95116 0.89695 0.88453 1.86461 1.83375 1.41750 1.27293 1.22174 0.97442 0.98636 0.99258 1.21419 1.00239 0.98560 0.93710 0.91656 0.92335 0.89332 0.88030 0.87318 0.71059 0.89650 0.92625 0.93005 0.90899 0.91145 0.92523 0.75630 0.90923 0.89295 0.92518 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -38.94 11.35 21.66 0.25 -38.69 16 2 C 0.16 8.54 4.35 84.93 0.37 8.91 16 3 Si 0.82 38.48 29.69 68.60 2.04 40.52 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.25 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.53 -28.67 8.91 84.04 0.75 -27.92 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.46 -21.78 2.69 -635.52 -1.71 -23.49 16 10 C 0.13 4.90 4.45 86.38 0.38 5.29 16 11 C -0.12 -4.03 5.84 29.85 0.17 -3.86 16 12 C 0.50 13.82 8.33 71.24 0.59 14.41 16 13 O -0.54 -17.17 16.64 21.96 0.37 -16.81 16 14 O -0.51 -10.73 13.42 -51.36 -0.69 -11.42 16 15 C 0.44 21.17 6.52 87.66 0.57 21.74 16 16 O -0.57 -32.47 12.77 -3.04 -0.04 -32.51 16 17 C -0.10 -3.63 1.66 -11.54 -0.02 -3.65 16 18 C -0.09 -2.96 4.78 30.60 0.15 -2.81 16 19 C -0.10 -2.85 5.57 30.59 0.17 -2.68 16 20 C 0.11 2.56 3.47 30.59 0.11 2.67 16 21 O -0.58 -12.41 13.32 -148.98 -1.98 -14.39 16 22 C -0.14 -3.10 5.54 30.57 0.17 -2.93 16 23 C -0.10 -2.99 4.93 30.58 0.15 -2.84 16 24 H 0.27 14.48 8.32 -92.71 -0.77 13.71 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.09 3.01 4.59 -2.39 -0.01 3.00 16 27 H 0.10 3.29 8.13 -2.39 -0.02 3.27 16 28 H 0.11 3.74 8.10 -2.39 -0.02 3.72 16 29 H 0.43 4.58 9.10 -74.06 -0.67 3.90 16 30 H 0.09 2.92 6.88 -2.39 -0.02 2.91 16 31 H 0.05 2.08 7.86 -2.39 -0.02 2.07 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.39 4.74 9.08 -74.06 -0.67 4.06 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.94 6.83 -2.39 -0.02 1.92 16 Total: -1.00 -71.38 327.61 1.52 -69.86 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.28 Total: 20.60 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 3.56 Total: 6.33 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -1.46 Total: -62.18 kcal Atomic # 8 Polarization: -72.78 SS G_CDS: -2.35 Total: -75.13 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.04 Total: 40.52 kcal Total: -71.38 1.52 -69.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.488 kcal (2) G-P(sol) polarization free energy of solvation -71.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds